Wall clock time and date at job start Tue Mar 31 2020 21:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47503 * 2 1 4 4 O 1.42901 * 109.47108 * 120.00804 * 2 1 3 5 5 C 1.42895 * 114.00631 * 126.43310 * 4 2 1 6 6 C 1.52998 * 112.84999 * 65.07279 * 5 4 2 7 7 N 1.46499 * 109.47225 * 60.52868 * 6 5 4 8 8 C 1.34775 * 119.99851 * 183.84582 * 7 6 5 9 9 O 1.21588 * 120.00208 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99672 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99827 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47427 * 35.00061 * 11 10 8 13 13 C 1.50699 * 109.46874 * 154.99897 * 11 10 8 14 14 H 1.07996 * 120.00592 * 359.97438 * 13 11 10 15 15 C 1.37875 * 120.00121 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99958 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00388 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47066 * 59.99890 * 17 15 13 19 19 H 1.48497 * 109.47118 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46870 * 299.99969 * 17 15 13 21 21 C 1.53001 * 109.47278 * 274.99592 * 11 10 8 22 22 F 1.39905 * 109.46558 * 60.00013 * 21 11 10 23 23 F 1.39899 * 109.47134 * 179.97438 * 21 11 10 24 24 F 1.39898 * 109.47176 * 300.00565 * 21 11 10 25 25 C 1.53777 * 113.61615 * 196.27157 * 5 4 2 26 26 C 1.53956 * 87.02187 * 89.22785 * 25 5 4 27 27 C 1.53784 * 113.61287 * 293.88010 * 5 4 2 28 28 H 1.08999 * 109.47039 * 299.99939 * 1 2 3 29 29 H 1.09006 * 109.46808 * 59.99425 * 1 2 3 30 30 H 1.09001 * 109.47489 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46672 * 239.99759 * 2 1 3 32 32 H 1.09001 * 109.47350 * 302.47097 * 3 2 1 33 33 H 1.09004 * 109.46980 * 62.47435 * 3 2 1 34 34 H 1.09009 * 109.47238 * 182.47074 * 3 2 1 35 35 H 1.09002 * 109.47149 * 180.53582 * 6 5 4 36 36 H 1.09006 * 109.46933 * 300.52775 * 6 5 4 37 37 H 0.96997 * 119.99785 * 3.84718 * 7 6 5 38 38 H 0.96997 * 119.99963 * 359.97438 * 10 8 7 39 39 H 0.96999 * 120.00604 * 180.02562 * 16 15 13 40 40 H 1.08996 * 113.61313 * 203.74518 * 25 5 4 41 41 H 1.08999 * 113.61373 * 334.64976 * 25 5 4 42 42 H 1.09000 * 113.53554 * 270.81376 * 26 25 5 43 43 H 1.08991 * 113.66917 * 139.93341 * 26 25 5 44 44 H 1.08998 * 113.61532 * 25.34427 * 27 5 4 45 45 H 1.08996 * 113.61735 * 156.25306 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.9310 -1.7281 0.8923 6 6 4.2397 -1.2260 0.2792 7 7 4.8933 -0.3036 1.2109 8 6 6.0285 0.3268 0.8500 9 8 6.5100 0.1304 -0.2490 10 7 6.6300 1.1750 1.7075 11 6 7.8637 1.8608 1.3150 12 1 7.8277 2.0926 0.2506 13 6 8.0009 3.1380 2.1030 14 1 7.2446 3.4119 2.8236 15 6 9.0914 3.9576 1.9031 16 7 10.0117 3.6250 1.0244 17 14 9.2619 5.5405 2.8802 18 1 9.3119 5.2241 4.3303 19 1 10.5123 6.2356 2.4823 20 1 8.0972 6.4198 2.6053 21 6 9.0634 0.9548 1.5994 22 9 8.9360 -0.2310 0.8680 23 9 10.2415 1.6094 1.2241 24 9 9.1096 0.6572 2.9656 25 6 3.1339 -2.6923 2.0729 26 6 1.9574 -3.5073 1.5054 27 6 2.3085 -2.9111 0.1320 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.6410 1.9689 -0.8670 33 1 1.7134 1.9433 0.9114 34 1 3.1292 1.4427 -0.0443 35 1 4.8979 -2.0727 0.0842 36 1 4.0275 -0.7079 -0.6561 37 1 4.5089 -0.1466 2.0876 38 1 6.2457 1.3320 2.5842 39 1 10.7792 4.2013 0.8840 40 1 4.0859 -3.2225 2.0450 41 1 2.9267 -2.2431 3.0442 42 1 0.9856 -3.1900 1.8836 43 1 2.1039 -4.5857 1.5636 44 1 1.4359 -2.6381 -0.4614 45 1 3.0343 -3.5011 -0.4275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932888942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:05 Heat of formation + Delta-G solvation = -216.587360 kcal Electronic energy + Delta-G solvation = -31657.154157 eV Core-core repulsion = 26874.421610 eV Total energy + Delta-G solvation = -4782.732548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.39454 -48.02716 -47.70908 -41.47403 -40.47751 -37.32372 -36.59073 -35.34746 -34.39710 -33.05925 -30.62823 -28.51174 -28.01877 -26.72059 -26.54947 -24.08958 -23.22739 -22.20604 -21.77959 -20.45341 -19.97281 -18.88554 -18.79041 -18.55037 -18.06064 -17.37180 -17.00759 -16.60791 -16.28391 -16.22150 -15.91981 -15.37029 -15.13569 -15.07460 -14.91310 -14.61403 -14.51984 -14.44035 -14.29206 -14.25194 -14.00748 -13.84673 -13.63553 -13.37391 -13.24142 -13.10972 -13.00893 -12.75179 -12.68132 -12.60197 -12.33607 -12.21259 -11.82872 -11.68967 -11.61301 -11.58503 -11.29004 -11.02798 -10.66905 -10.40797 -10.30501 -9.75796 -8.20001 -6.50859 1.46821 1.49746 1.57513 1.72505 2.15298 2.37588 2.57131 2.58277 2.95603 3.27412 3.58267 3.65737 3.66949 3.81259 3.89753 3.90885 4.01499 4.17919 4.21377 4.29610 4.35071 4.49625 4.61780 4.74888 4.80484 4.82775 4.88971 4.91543 4.91841 4.98073 5.06219 5.10740 5.23665 5.30518 5.37432 5.44037 5.44621 5.50800 5.55574 5.66410 6.12897 6.35497 6.53997 7.16620 7.21565 7.66617 8.72725 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.003317 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.608323 B = 8438.207192 C = 9414.615997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.164 4.164 4 O -0.357 6.357 5 C 0.078 3.922 6 C 0.130 3.870 7 N -0.722 5.722 8 C 0.696 3.304 9 O -0.631 6.631 10 N -0.720 5.720 11 C 0.272 3.728 12 H 0.045 0.955 13 C -0.561 4.561 14 H 0.091 0.909 15 C 0.016 3.984 16 N -0.875 5.875 17 Si 0.983 3.017 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.263 1.263 21 C 0.413 3.587 22 F -0.219 7.219 23 F -0.151 7.151 24 F -0.203 7.203 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.154 4.154 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.408 0.592 38 H 0.409 0.591 39 H 0.269 0.731 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.724 -9.991 1.719 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.221 4.221 4 O -0.277 6.277 5 C 0.037 3.963 6 C 0.005 3.995 7 N -0.378 5.378 8 C 0.396 3.604 9 O -0.512 6.512 10 N -0.374 5.374 11 C 0.164 3.836 12 H 0.063 0.937 13 C -0.598 4.598 14 H 0.109 0.891 15 C -0.190 4.190 16 N -0.509 5.509 17 Si 0.807 3.193 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.187 1.187 21 C 0.356 3.644 22 F -0.201 7.201 23 F -0.132 7.132 24 F -0.185 7.185 25 C -0.162 4.162 26 C -0.160 4.160 27 C -0.192 4.192 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.244 0.756 38 H 0.245 0.755 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.155 -10.087 0.801 20.784 hybrid contribution 0.750 0.777 0.639 1.255 sum -17.404 -9.309 1.440 19.790 Atomic orbital electron populations 1.22005 0.92932 1.02932 1.02929 1.22127 0.95231 0.92221 0.88266 1.22149 1.00510 0.96730 1.02734 1.87938 1.60380 1.47834 1.31529 1.22940 0.87118 0.87146 0.99049 1.21735 0.93291 0.92326 0.92169 1.44714 1.25001 1.47797 1.20268 1.16237 0.81056 0.79166 0.83943 1.90878 1.67762 1.69248 1.23285 1.44989 1.26875 1.46610 1.18958 1.19154 0.77153 0.88784 0.98555 0.93721 1.21176 1.09992 1.03636 1.25000 0.89110 1.25992 0.94407 1.02121 0.96450 1.70528 1.10595 1.36701 1.33048 0.85214 0.77766 0.77676 0.78680 1.19043 1.20948 1.18747 1.23341 0.89261 0.78925 0.72837 1.93061 1.96366 1.52404 1.78251 1.93371 1.50482 1.78566 1.90812 1.92980 1.97167 1.93988 1.34382 1.23069 1.00262 0.95549 0.97270 1.22730 0.98282 1.00187 0.94777 1.23520 1.01550 0.96139 0.97959 0.92145 0.90361 0.91547 0.91741 0.90686 0.92037 0.94568 0.91454 0.93033 0.75595 0.75547 0.92157 0.88428 0.90294 0.89590 0.89763 0.90026 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.56 71.98 0.69 -1.45 16 2 C 0.08 1.48 2.36 30.59 0.07 1.55 16 3 C -0.16 -3.58 9.56 71.98 0.69 -2.89 16 4 O -0.36 -7.32 9.79 -148.98 -1.46 -8.78 16 5 C 0.08 1.48 0.50 -10.27 -0.01 1.47 16 6 C 0.13 3.37 4.86 86.38 0.42 3.79 16 7 N -0.72 -21.63 5.47 -478.53 -2.62 -24.24 16 8 C 0.70 28.61 8.10 179.05 1.45 30.06 16 9 O -0.63 -31.65 14.91 -3.99 -0.06 -31.71 16 10 N -0.72 -30.22 4.99 -461.40 -2.30 -32.52 16 11 C 0.27 13.98 2.21 44.25 0.10 14.07 16 12 H 0.05 2.66 7.58 -2.39 -0.02 2.64 16 13 C -0.56 -28.75 8.46 25.60 0.22 -28.54 16 14 H 0.09 4.28 7.74 -2.91 -0.02 4.26 16 15 C 0.02 0.81 5.20 84.65 0.44 1.25 16 16 N -0.87 -49.05 9.51 21.45 0.20 -48.84 16 17 Si 0.98 40.85 29.54 68.60 2.03 42.87 16 18 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 19 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 C 0.41 21.91 2.81 71.98 0.20 22.12 16 22 F -0.22 -11.65 15.67 44.97 0.70 -10.94 16 23 F -0.15 -8.68 12.92 44.97 0.58 -8.10 16 24 F -0.20 -10.16 16.94 44.97 0.76 -9.40 16 25 C -0.12 -2.00 7.44 31.18 0.23 -1.77 16 26 C -0.12 -1.57 8.02 31.18 0.25 -1.32 16 27 C -0.15 -2.22 6.98 31.12 0.22 -2.00 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.20 6.38 -2.39 -0.02 1.19 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.49 7.24 -2.38 -0.02 1.48 16 37 H 0.41 10.32 8.49 -92.71 -0.79 9.53 16 38 H 0.41 14.50 8.55 -92.71 -0.79 13.71 16 39 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.10 1.56 8.10 -2.39 -0.02 1.55 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 1.08 7.40 -2.39 -0.02 1.07 16 45 H 0.10 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -66.74 376.43 2.25 -64.48 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -0.55 Total: 30.82 kcal Atomic # 6 Polarization: 31.38 SS G_CDS: 4.97 Total: 36.35 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -4.72 Total: -105.61 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.52 Total: -40.49 kcal Atomic # 9 Polarization: -30.48 SS G_CDS: 2.05 Total: -28.43 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.87 kcal Total: -66.74 2.25 -64.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.104 kcal (2) G-P(sol) polarization free energy of solvation -66.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds