Wall clock time and date at job start Tue Mar 31 2020 21:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47464 * 2 1 4 4 O 1.42899 * 109.46993 * 120.00440 * 2 1 3 5 5 C 1.42902 * 114.00234 * 106.93539 * 4 2 1 6 6 C 1.52992 * 112.85032 * 296.44272 * 5 4 2 7 7 N 1.46498 * 109.47253 * 299.42566 * 6 5 4 8 8 C 1.34784 * 120.00353 * 176.14824 * 7 6 5 9 9 O 1.21579 * 119.99642 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99798 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99433 * 180.27363 * 10 8 7 12 12 H 1.08996 * 109.47164 * 324.72096 * 11 10 8 13 13 C 1.50706 * 109.47058 * 204.72180 * 11 10 8 14 14 H 1.07998 * 119.99652 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00192 * 180.02562 * 13 11 10 16 16 N 1.31518 * 119.99966 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00090 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47306 * 89.99488 * 17 15 13 19 19 H 1.48498 * 109.46823 * 210.00095 * 17 15 13 20 20 H 1.48501 * 109.46767 * 329.99594 * 17 15 13 21 21 C 1.52999 * 109.47169 * 84.72749 * 11 10 8 22 22 F 1.39898 * 109.47602 * 59.99445 * 21 11 10 23 23 F 1.39899 * 109.47100 * 179.97438 * 21 11 10 24 24 F 1.39906 * 109.46903 * 299.99453 * 21 11 10 25 25 C 1.53786 * 113.61367 * 67.64085 * 5 4 2 26 26 C 1.53952 * 87.02204 * 89.22547 * 25 5 4 27 27 C 1.53783 * 87.11119 * 25.36320 * 26 25 5 28 28 H 1.08999 * 109.46830 * 62.27698 * 1 2 3 29 29 H 1.08997 * 109.46984 * 182.28063 * 1 2 3 30 30 H 1.08996 * 109.46771 * 302.28268 * 1 2 3 31 31 H 1.09003 * 109.46952 * 239.99992 * 2 1 3 32 32 H 1.09005 * 109.47196 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47342 * 300.00431 * 3 2 1 34 34 H 1.09003 * 109.47043 * 60.00047 * 3 2 1 35 35 H 1.08995 * 109.47424 * 179.42591 * 6 5 4 36 36 H 1.09004 * 109.47192 * 59.42452 * 6 5 4 37 37 H 0.97004 * 120.00316 * 356.14204 * 7 6 5 38 38 H 0.97003 * 120.00676 * 0.02562 * 10 8 7 39 39 H 0.96994 * 119.99993 * 180.02562 * 16 15 13 40 40 H 1.09000 * 113.61088 * 203.75224 * 25 5 4 41 41 H 1.09001 * 113.60839 * 334.64859 * 25 5 4 42 42 H 1.08997 * 113.53972 * 270.81557 * 26 25 5 43 43 H 1.09004 * 113.66443 * 139.92803 * 26 25 5 44 44 H 1.08996 * 113.61807 * 220.08765 * 27 26 25 45 45 H 1.09009 * 113.69484 * 89.19097 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.5586 -1.9659 0.9071 6 6 1.5286 -2.9516 0.3519 7 7 0.4472 -3.1274 1.3245 8 6 -0.6171 -3.8952 1.0175 9 8 -0.6799 -4.4416 -0.0668 10 7 -1.6121 -4.0565 1.9121 11 6 -2.7661 -4.8960 1.5806 12 1 -2.9978 -4.7929 0.5205 13 6 -3.9547 -4.4618 2.3991 14 1 -3.8600 -3.6423 3.0961 15 6 -5.1630 -5.1109 2.2581 16 7 -5.2784 -6.1085 1.4089 17 14 -6.6364 -4.5723 3.2721 18 1 -7.3923 -3.5301 2.5322 19 1 -7.5188 -5.7403 3.5220 20 1 -6.1693 -4.0185 4.5684 21 6 -2.4394 -6.3579 1.8916 22 9 -2.1420 -6.4902 3.2522 23 9 -3.5416 -7.1595 1.5756 24 9 -1.3360 -6.7610 1.1317 25 6 3.8687 -1.9256 0.1027 26 6 4.6011 -1.8275 1.4533 27 6 3.3831 -2.5297 2.0764 28 1 -0.3633 0.4781 -0.9097 29 1 -0.3633 -1.0268 0.0409 30 1 -0.3633 0.5489 0.8688 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 2.0088 -3.9120 0.1650 36 1 1.1191 -2.5626 -0.5804 37 1 0.4972 -2.6913 2.1895 38 1 -1.5625 -3.6197 2.7767 39 1 -6.1284 -6.5649 1.3095 40 1 4.0760 -2.8475 -0.4406 41 1 3.9730 -1.0351 -0.5173 42 1 4.7393 -0.8034 1.8001 43 1 5.5161 -2.4181 1.4987 44 1 3.0960 -2.1265 3.0475 45 1 3.4561 -3.6173 2.0746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932888943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:08 Heat of formation + Delta-G solvation = -195.885555 kcal Electronic energy + Delta-G solvation = -31697.590732 eV Core-core repulsion = 26915.755882 eV Total energy + Delta-G solvation = -4781.834850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.28191 -45.93378 -45.55359 -40.50355 -38.98467 -36.55558 -34.80177 -33.85281 -32.49116 -32.24210 -28.96207 -27.34665 -27.03048 -26.01290 -24.51123 -22.99276 -21.63529 -21.26146 -20.11818 -19.59704 -18.35136 -17.07285 -16.77299 -16.62960 -16.54384 -16.10658 -15.56354 -15.36178 -14.99913 -14.76069 -14.57620 -14.51504 -13.83053 -13.55155 -13.47550 -13.09881 -12.85737 -12.77097 -12.53547 -12.46768 -12.37898 -12.33487 -12.31211 -12.22670 -11.91869 -11.83723 -11.76190 -11.60656 -11.15493 -11.14867 -10.93650 -10.84082 -10.81656 -10.75842 -10.37088 -10.25096 -9.67191 -9.60578 -9.43701 -8.74435 -8.67098 -8.10164 -6.20574 -4.43998 3.11462 3.20322 3.26900 3.30041 3.45029 3.84613 4.20683 4.30864 4.34420 4.54182 4.58322 4.63645 4.81773 4.93923 4.96342 4.97164 5.08250 5.09510 5.44026 5.47485 5.48165 5.51921 5.60135 5.66097 5.67902 5.75291 5.78850 5.83202 5.90658 5.94139 5.97835 6.07238 6.10619 6.27603 6.28943 6.82723 6.90013 7.17748 7.26873 7.42449 7.66049 7.75155 8.53301 8.72705 9.19157 9.30980 10.71074 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.003339 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.865388 B = 8383.913423 C = 9356.722255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.082 3.918 3 C -0.154 4.154 4 O -0.350 6.350 5 C 0.079 3.921 6 C 0.131 3.869 7 N -0.744 5.744 8 C 0.698 3.302 9 O -0.587 6.587 10 N -0.726 5.726 11 C 0.263 3.737 12 H 0.084 0.916 13 C -0.550 4.550 14 H 0.077 0.923 15 C 0.065 3.935 16 N -0.840 5.840 17 Si 0.915 3.085 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.415 3.585 22 F -0.210 7.210 23 F -0.138 7.138 24 F -0.217 7.217 25 C -0.159 4.159 26 C -0.133 4.133 27 C -0.123 4.123 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.394 0.606 39 H 0.268 0.732 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.821 10.998 -0.371 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.024 3.976 3 C -0.211 4.211 4 O -0.269 6.269 5 C 0.039 3.961 6 C 0.005 3.995 7 N -0.401 5.401 8 C 0.398 3.602 9 O -0.465 6.465 10 N -0.379 5.379 11 C 0.156 3.844 12 H 0.102 0.898 13 C -0.588 4.588 14 H 0.095 0.905 15 C -0.144 4.144 16 N -0.473 5.473 17 Si 0.741 3.259 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.359 3.641 22 F -0.192 7.192 23 F -0.119 7.119 24 F -0.199 7.199 25 C -0.197 4.197 26 C -0.170 4.170 27 C -0.160 4.160 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.229 0.771 38 H 0.227 0.773 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.587 10.372 -1.303 18.767 hybrid contribution -0.710 0.188 1.090 1.315 sum 14.877 10.559 -0.213 18.245 Atomic orbital electron populations 1.22262 0.94873 1.03615 1.02125 1.22044 0.94273 0.92840 0.88396 1.21989 1.01265 0.95389 1.02476 1.87939 1.79030 1.28222 1.31726 1.22869 0.91050 0.84326 0.97888 1.21551 0.87281 0.98408 0.92232 1.44896 1.21105 1.54439 1.19703 1.16072 0.79863 0.79605 0.84643 1.90909 1.79829 1.52777 1.22981 1.45252 1.21269 1.53146 1.18220 1.19578 0.82955 0.80814 1.01003 0.89813 1.20879 0.92780 1.19665 1.25428 0.90526 1.25075 0.99421 0.94132 0.95768 1.70409 1.25022 1.18776 1.33115 0.86219 0.81275 0.78256 0.80113 1.20235 1.20826 1.19547 1.23195 0.73641 0.94540 0.72720 1.92980 1.93613 1.97074 1.35575 1.93399 1.50117 1.76258 1.92128 1.93071 1.57163 1.92956 1.76680 1.23530 0.95719 1.03084 0.97377 1.22776 0.97180 1.01234 0.95832 1.22992 0.94628 1.00600 0.97821 0.91953 0.91270 0.91985 0.91874 0.92428 0.91515 0.91862 0.91121 0.91618 0.77068 0.77264 0.92171 0.88930 0.90772 0.89834 0.91231 0.90296 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.46 37.16 0.35 -1.61 16 2 C 0.08 0.83 2.36 -26.73 -0.06 0.76 16 3 C -0.15 -1.27 9.56 37.16 0.36 -0.92 16 4 O -0.35 -3.85 9.79 -35.23 -0.34 -4.20 16 5 C 0.08 0.81 0.51 -89.81 -0.05 0.76 16 6 C 0.13 1.71 4.29 -4.05 -0.02 1.69 16 7 N -0.74 -11.18 4.90 -65.23 -0.32 -11.50 16 8 C 0.70 14.10 8.09 -86.92 -0.70 13.40 16 9 O -0.59 -14.25 14.91 5.30 0.08 -14.17 16 10 N -0.73 -15.11 4.99 -59.81 -0.30 -15.41 16 11 C 0.26 6.63 2.21 -69.08 -0.15 6.48 16 12 H 0.08 2.38 7.58 -51.93 -0.39 1.98 16 13 C -0.55 -14.14 8.47 -34.44 -0.29 -14.43 16 14 H 0.08 1.86 7.74 -52.49 -0.41 1.46 16 15 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 16 N -0.84 -23.20 9.50 55.43 0.53 -22.68 16 17 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 C 0.42 10.85 2.81 37.16 0.10 10.96 16 22 F -0.21 -5.28 16.94 2.25 0.04 -5.24 16 23 F -0.14 -3.87 12.91 2.25 0.03 -3.84 16 24 F -0.22 -5.65 15.66 2.25 0.04 -5.62 16 25 C -0.16 -1.33 6.99 -25.83 -0.18 -1.51 16 26 C -0.13 -1.04 8.02 -25.83 -0.21 -1.24 16 27 C -0.12 -1.11 7.43 -25.92 -0.19 -1.31 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.97 6.50 -51.93 -0.34 0.63 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.62 6.46 -51.93 -0.34 0.28 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.93 6.78 -51.93 -0.35 0.58 16 37 H 0.40 5.17 8.49 -40.82 -0.35 4.83 16 38 H 0.39 7.13 8.55 -40.82 -0.35 6.78 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.07 0.59 7.38 -51.93 -0.38 0.21 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.86 8.10 -51.92 -0.42 0.44 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -30.72 373.12 -7.47 -38.19 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.68 Total: 9.02 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: -1.14 Total: 14.64 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.09 Total: -49.59 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.27 Total: -18.37 kcal Atomic # 9 Polarization: -14.81 SS G_CDS: 0.10 Total: -14.70 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.72 -7.47 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.692 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds