Wall clock time and date at job start Tue Mar 31 2020 21:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47464 * 2 1 4 4 O 1.42899 * 109.46993 * 120.00440 * 2 1 3 5 5 C 1.42902 * 114.00234 * 106.93539 * 4 2 1 6 6 C 1.52992 * 112.85032 * 296.44272 * 5 4 2 7 7 N 1.46498 * 109.47253 * 299.42566 * 6 5 4 8 8 C 1.34784 * 120.00353 * 176.14824 * 7 6 5 9 9 O 1.21579 * 119.99642 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99798 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99433 * 180.27363 * 10 8 7 12 12 H 1.08996 * 109.47164 * 324.72096 * 11 10 8 13 13 C 1.50706 * 109.47058 * 204.72180 * 11 10 8 14 14 H 1.07998 * 119.99652 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00192 * 180.02562 * 13 11 10 16 16 N 1.31518 * 119.99966 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00090 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47306 * 89.99488 * 17 15 13 19 19 H 1.48498 * 109.46823 * 210.00095 * 17 15 13 20 20 H 1.48501 * 109.46767 * 329.99594 * 17 15 13 21 21 C 1.52999 * 109.47169 * 84.72749 * 11 10 8 22 22 F 1.39898 * 109.47602 * 59.99445 * 21 11 10 23 23 F 1.39899 * 109.47100 * 179.97438 * 21 11 10 24 24 F 1.39906 * 109.46903 * 299.99453 * 21 11 10 25 25 C 1.53786 * 113.61367 * 67.64085 * 5 4 2 26 26 C 1.53952 * 87.02204 * 89.22547 * 25 5 4 27 27 C 1.53783 * 87.11119 * 25.36320 * 26 25 5 28 28 H 1.08999 * 109.46830 * 62.27698 * 1 2 3 29 29 H 1.08997 * 109.46984 * 182.28063 * 1 2 3 30 30 H 1.08996 * 109.46771 * 302.28268 * 1 2 3 31 31 H 1.09003 * 109.46952 * 239.99992 * 2 1 3 32 32 H 1.09005 * 109.47196 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47342 * 300.00431 * 3 2 1 34 34 H 1.09003 * 109.47043 * 60.00047 * 3 2 1 35 35 H 1.08995 * 109.47424 * 179.42591 * 6 5 4 36 36 H 1.09004 * 109.47192 * 59.42452 * 6 5 4 37 37 H 0.97004 * 120.00316 * 356.14204 * 7 6 5 38 38 H 0.97003 * 120.00676 * 0.02562 * 10 8 7 39 39 H 0.96994 * 119.99993 * 180.02562 * 16 15 13 40 40 H 1.09000 * 113.61088 * 203.75224 * 25 5 4 41 41 H 1.09001 * 113.60839 * 334.64859 * 25 5 4 42 42 H 1.08997 * 113.53972 * 270.81557 * 26 25 5 43 43 H 1.09004 * 113.66443 * 139.92803 * 26 25 5 44 44 H 1.08996 * 113.61807 * 220.08765 * 27 26 25 45 45 H 1.09009 * 113.69484 * 89.19097 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.5586 -1.9659 0.9071 6 6 1.5286 -2.9516 0.3519 7 7 0.4472 -3.1274 1.3245 8 6 -0.6171 -3.8952 1.0175 9 8 -0.6799 -4.4416 -0.0668 10 7 -1.6121 -4.0565 1.9121 11 6 -2.7661 -4.8960 1.5806 12 1 -2.9978 -4.7929 0.5205 13 6 -3.9547 -4.4618 2.3991 14 1 -3.8600 -3.6423 3.0961 15 6 -5.1630 -5.1109 2.2581 16 7 -5.2784 -6.1085 1.4089 17 14 -6.6364 -4.5723 3.2721 18 1 -7.3923 -3.5301 2.5322 19 1 -7.5188 -5.7403 3.5220 20 1 -6.1693 -4.0185 4.5684 21 6 -2.4394 -6.3579 1.8916 22 9 -2.1420 -6.4902 3.2522 23 9 -3.5416 -7.1595 1.5756 24 9 -1.3360 -6.7610 1.1317 25 6 3.8687 -1.9256 0.1027 26 6 4.6011 -1.8275 1.4533 27 6 3.3831 -2.5297 2.0764 28 1 -0.3633 0.4781 -0.9097 29 1 -0.3633 -1.0268 0.0409 30 1 -0.3633 0.5489 0.8688 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 2.0088 -3.9120 0.1650 36 1 1.1191 -2.5626 -0.5804 37 1 0.4972 -2.6913 2.1895 38 1 -1.5625 -3.6197 2.7767 39 1 -6.1284 -6.5649 1.3095 40 1 4.0760 -2.8475 -0.4406 41 1 3.9730 -1.0351 -0.5173 42 1 4.7393 -0.8034 1.8001 43 1 5.5161 -2.4181 1.4987 44 1 3.0960 -2.1265 3.0475 45 1 3.4561 -3.6173 2.0746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932888943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:07 Heat of formation + Delta-G solvation = -215.796496 kcal Electronic energy + Delta-G solvation = -31698.454135 eV Core-core repulsion = 26915.755882 eV Total energy + Delta-G solvation = -4782.698253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.39432 -48.02701 -47.70829 -41.48431 -40.46968 -37.33320 -36.59310 -35.34884 -34.39785 -33.04868 -30.63321 -28.53805 -27.97824 -26.73192 -26.55062 -24.08753 -23.22282 -22.21171 -21.78279 -20.43782 -19.97188 -18.88656 -18.79072 -18.55084 -18.06706 -17.36165 -17.02016 -16.62113 -16.28457 -16.23515 -15.88603 -15.41694 -15.14180 -15.08841 -14.91319 -14.61073 -14.48118 -14.43676 -14.28189 -14.22179 -14.00755 -13.85135 -13.69063 -13.36455 -13.23764 -13.09932 -13.02275 -12.74149 -12.67340 -12.60344 -12.32277 -12.20812 -11.81728 -11.70049 -11.61443 -11.57219 -11.28654 -11.02104 -10.67407 -10.41453 -10.30422 -9.75741 -8.20231 -6.50913 1.46590 1.48165 1.58901 1.72631 2.15454 2.37379 2.57251 2.58255 2.95506 3.27552 3.58110 3.66337 3.66880 3.81172 3.89749 3.91071 4.01762 4.17910 4.21427 4.29694 4.34956 4.49692 4.61366 4.74310 4.80780 4.83115 4.89224 4.90972 4.92241 4.98469 5.06361 5.10731 5.23942 5.31097 5.37315 5.44153 5.44748 5.50834 5.55519 5.66474 6.12850 6.35287 6.54220 7.16610 7.21523 7.66734 8.72626 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.003339 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.865388 B = 8383.913423 C = 9356.722255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 C -0.148 4.148 4 O -0.357 6.357 5 C 0.078 3.922 6 C 0.129 3.871 7 N -0.721 5.721 8 C 0.696 3.304 9 O -0.630 6.630 10 N -0.720 5.720 11 C 0.271 3.729 12 H 0.045 0.955 13 C -0.560 4.560 14 H 0.091 0.909 15 C 0.015 3.985 16 N -0.875 5.875 17 Si 0.983 3.017 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.259 1.259 21 C 0.413 3.587 22 F -0.203 7.203 23 F -0.151 7.151 24 F -0.219 7.219 25 C -0.153 4.153 26 C -0.122 4.122 27 C -0.124 4.124 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.408 0.592 38 H 0.409 0.591 39 H 0.268 0.732 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.970 12.719 0.849 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 C -0.205 4.205 4 O -0.277 6.277 5 C 0.037 3.963 6 C 0.004 3.996 7 N -0.378 5.378 8 C 0.396 3.604 9 O -0.511 6.511 10 N -0.374 5.374 11 C 0.163 3.837 12 H 0.063 0.937 13 C -0.597 4.597 14 H 0.109 0.891 15 C -0.190 4.190 16 N -0.509 5.509 17 Si 0.807 3.193 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.183 1.183 21 C 0.356 3.644 22 F -0.185 7.185 23 F -0.132 7.132 24 F -0.201 7.201 25 C -0.192 4.192 26 C -0.160 4.160 27 C -0.161 4.161 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.244 0.756 38 H 0.244 0.756 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.791 12.143 -0.044 20.722 hybrid contribution -1.020 -0.348 0.667 1.267 sum 15.771 11.795 0.623 19.704 Atomic orbital electron populations 1.22241 0.96184 1.01643 1.02574 1.22123 0.93233 0.94108 0.88291 1.21949 1.01820 0.93825 1.02930 1.87938 1.79161 1.28270 1.32302 1.22942 0.90589 0.83413 0.99319 1.21742 0.87067 0.99209 0.91538 1.44726 1.19884 1.52634 1.20530 1.16229 0.80526 0.79794 0.83830 1.90877 1.80806 1.54695 1.24764 1.44992 1.20535 1.52824 1.19084 1.19161 0.84604 0.81039 0.98875 0.93712 1.21205 0.92977 1.19984 1.25518 0.89111 1.25992 1.02295 0.93998 0.96712 1.70539 1.25741 1.19992 1.34599 0.85159 0.77516 0.77763 0.78889 1.19564 1.20964 1.18276 1.23348 0.73241 0.94839 0.72952 1.92980 1.93529 1.97065 1.34946 1.93373 1.50866 1.76695 1.92287 1.93062 1.57178 1.93022 1.76815 1.23544 0.93992 1.03786 0.97830 1.22729 0.97111 1.01411 0.94718 1.23038 0.94994 1.00786 0.97318 0.91008 0.94253 0.92141 0.91622 0.91475 0.90281 0.92206 0.91494 0.92936 0.75602 0.75554 0.92177 0.88331 0.90046 0.89589 0.89768 0.90315 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 9.46 71.98 0.68 -3.11 16 2 C 0.08 1.51 2.36 30.59 0.07 1.58 16 3 C -0.15 -2.13 9.56 71.98 0.69 -1.44 16 4 O -0.36 -7.32 9.79 -148.98 -1.46 -8.78 16 5 C 0.08 1.48 0.51 -10.27 -0.01 1.47 16 6 C 0.13 3.35 4.29 86.38 0.37 3.72 16 7 N -0.72 -21.54 4.90 -478.56 -2.35 -23.88 16 8 C 0.70 28.53 8.09 179.05 1.45 29.98 16 9 O -0.63 -31.55 14.91 -3.96 -0.06 -31.61 16 10 N -0.72 -30.16 4.99 -461.41 -2.30 -32.47 16 11 C 0.27 13.94 2.21 44.25 0.10 14.04 16 12 H 0.05 2.66 7.58 -2.39 -0.02 2.65 16 13 C -0.56 -28.67 8.47 25.60 0.22 -28.45 16 14 H 0.09 4.29 7.74 -2.91 -0.02 4.27 16 15 C 0.02 0.80 5.20 84.65 0.44 1.24 16 16 N -0.87 -49.01 9.50 21.45 0.20 -48.81 16 17 Si 0.98 40.86 29.54 68.60 2.03 42.88 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 C 0.41 21.88 2.81 71.98 0.20 22.09 16 22 F -0.20 -10.14 16.94 44.97 0.76 -9.38 16 23 F -0.15 -8.67 12.91 44.97 0.58 -8.09 16 24 F -0.22 -11.63 15.66 44.97 0.70 -10.93 16 25 C -0.15 -2.22 6.99 31.18 0.22 -2.00 16 26 C -0.12 -1.57 8.02 31.18 0.25 -1.32 16 27 C -0.12 -2.00 7.43 31.12 0.23 -1.77 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.11 6.50 -2.39 -0.02 1.09 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.21 6.46 -2.39 -0.02 1.19 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.52 6.78 -2.38 -0.02 1.50 16 37 H 0.41 10.29 8.49 -92.71 -0.79 9.50 16 38 H 0.41 14.49 8.55 -92.71 -0.79 13.69 16 39 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.10 1.33 8.10 -2.39 -0.02 1.31 16 41 H 0.08 1.09 7.38 -2.39 -0.02 1.07 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.10 1.57 8.10 -2.38 -0.02 1.55 16 Total: -1.00 -66.62 373.12 2.47 -64.15 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.55 Total: 30.90 kcal Atomic # 6 Polarization: 31.09 SS G_CDS: 4.91 Total: 36.01 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -4.44 Total: -105.15 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -1.52 Total: -40.39 kcal Atomic # 9 Polarization: -30.44 SS G_CDS: 2.05 Total: -28.40 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Total: -66.62 2.47 -64.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.647 kcal (2) G-P(sol) polarization free energy of solvation -66.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds