Wall clock time and date at job start Tue Mar 31 2020 21:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46740 * 2 1 4 4 O 1.42897 * 109.46960 * 120.00022 * 2 1 3 5 5 C 1.42904 * 113.99591 * 150.00180 * 4 2 1 6 6 H 1.08997 * 109.49681 * 330.06088 * 5 4 2 7 7 C 1.53038 * 109.49432 * 209.99787 * 5 4 2 8 8 C 1.53042 * 109.53989 * 178.68106 * 7 5 4 9 9 C 1.53191 * 109.30936 * 61.36381 * 8 7 5 10 10 N 1.46923 * 108.77876 * 305.36536 * 9 8 7 11 11 C 1.34775 * 120.63669 * 233.58417 * 10 9 8 12 12 O 1.21586 * 120.00468 * 185.02518 * 11 10 9 13 13 N 1.34773 * 119.99606 * 5.02854 * 11 10 9 14 14 C 1.46498 * 120.00012 * 174.78621 * 13 11 10 15 15 H 1.08994 * 109.47426 * 325.27847 * 14 13 11 16 16 C 1.50702 * 109.47552 * 205.27446 * 14 13 11 17 17 H 1.08004 * 119.99529 * 0.02562 * 16 14 13 18 18 C 1.37874 * 120.00075 * 180.02562 * 16 14 13 19 19 N 1.31511 * 120.00086 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 119.99683 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47395 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47188 * 119.99902 * 20 18 16 23 23 H 1.48506 * 109.47161 * 239.99809 * 20 18 16 24 24 C 1.53005 * 109.46936 * 85.27623 * 14 13 11 25 25 F 1.39894 * 109.47405 * 60.00412 * 24 14 13 26 26 F 1.39902 * 109.46968 * 180.02562 * 24 14 13 27 27 F 1.39898 * 109.47386 * 299.99821 * 24 14 13 28 28 C 1.46935 * 118.73478 * 53.86095 * 10 9 8 29 29 H 1.09005 * 109.47244 * 299.99816 * 1 2 3 30 30 H 1.09001 * 109.47357 * 59.99479 * 1 2 3 31 31 H 1.09000 * 109.47353 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46868 * 240.00140 * 2 1 3 33 33 H 1.08998 * 109.47326 * 60.00421 * 3 2 1 34 34 H 1.09008 * 109.46628 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47461 * 299.99777 * 3 2 1 36 36 H 1.09003 * 109.46006 * 58.66225 * 7 5 4 37 37 H 1.08995 * 109.46400 * 298.70244 * 7 5 4 38 38 H 1.09004 * 109.49563 * 301.41669 * 8 7 5 39 39 H 1.08991 * 109.52852 * 181.33324 * 8 7 5 40 40 H 1.09000 * 109.58636 * 185.57898 * 9 8 7 41 41 H 1.08998 * 109.70306 * 65.22905 * 9 8 7 42 42 H 0.97001 * 120.00153 * 355.05826 * 13 11 10 43 43 H 0.97006 * 119.99401 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.58363 * 65.93107 * 28 10 9 45 45 H 1.09000 * 109.58469 * 186.34809 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9885 6 1 3.3695 -1.6385 -0.0501 7 6 3.3418 -2.5495 1.9026 8 6 4.6771 -3.2660 1.6886 9 6 5.8244 -2.3188 2.0535 10 7 5.6757 -1.0769 1.2827 11 6 6.6926 -0.6081 0.5327 12 8 6.5901 0.4662 -0.0274 13 7 7.8231 -1.3303 0.4034 14 6 8.8824 -0.8770 -0.5014 15 1 8.4359 -0.3945 -1.3707 16 6 9.7012 -2.0604 -0.9490 17 1 9.4567 -3.0511 -0.5952 18 6 10.7625 -1.8783 -1.8102 19 7 11.0599 -0.6720 -2.2414 20 14 11.7769 -3.3452 -2.3655 21 1 11.2408 -4.5821 -1.7428 22 1 11.7067 -3.4644 -3.8440 23 1 13.1902 -3.1553 -1.9507 24 6 9.7843 0.1204 0.2284 25 9 10.3576 -0.4989 1.3442 26 9 10.7956 0.5537 -0.6358 27 9 9.0244 1.2190 0.6439 28 6 4.3992 -0.3523 1.3499 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 2.5230 -3.2295 1.6671 37 1 3.2624 -2.2323 2.9424 38 1 4.7678 -3.5617 0.6434 39 1 4.7210 -4.1517 2.3224 40 1 6.7774 -2.7882 1.8097 41 1 5.7902 -2.0937 3.1194 42 1 7.9338 -2.1522 0.9065 43 1 11.8063 -0.5440 -2.8475 44 1 4.2486 0.0297 2.3597 45 1 4.4116 0.4762 0.6418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932895928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:22 Heat of formation + Delta-G solvation = -231.240461 kcal Electronic energy + Delta-G solvation = -31825.980384 eV Core-core repulsion = 27042.612431 eV Total energy + Delta-G solvation = -4783.367954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.40058 -48.03309 -47.71517 -41.51706 -39.81945 -37.81059 -36.54740 -34.64918 -34.02204 -32.98484 -31.23694 -29.81160 -28.12200 -26.63311 -26.22640 -24.14954 -23.43906 -22.30724 -22.00351 -20.82381 -19.65048 -18.90080 -18.75998 -18.61258 -17.86078 -17.58300 -17.10708 -16.61643 -16.59268 -16.08189 -15.83024 -15.32446 -15.10387 -14.98792 -14.94717 -14.56859 -14.44517 -14.34164 -14.29567 -14.14289 -14.01547 -13.93557 -13.87788 -13.62587 -13.27306 -13.11505 -13.04382 -12.78299 -12.70918 -12.64543 -12.25204 -12.20223 -11.97904 -11.86339 -11.65957 -11.54336 -11.42151 -11.18901 -10.76859 -10.69647 -10.17670 -9.48021 -8.20813 -6.52016 1.46002 1.47615 1.55012 1.62791 2.06819 2.36255 2.55661 2.62391 2.94690 2.99672 3.75081 3.79416 3.80822 3.87277 3.94833 3.97310 4.01695 4.13773 4.15235 4.19718 4.28389 4.48300 4.56558 4.65803 4.71280 4.74109 4.83906 4.90353 4.90881 4.93651 4.98987 5.05886 5.15514 5.27436 5.33676 5.35392 5.42404 5.46692 5.57393 5.65252 5.97122 6.28115 6.53319 7.01787 7.18557 7.58130 8.72263 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.003310 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.673325 B = 8457.659177 C = 8869.616387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 C -0.180 4.180 4 O -0.379 6.379 5 C 0.084 3.916 6 H 0.055 0.945 7 C -0.108 4.108 8 C -0.123 4.123 9 C 0.099 3.901 10 N -0.624 5.624 11 C 0.696 3.304 12 O -0.627 6.627 13 N -0.718 5.718 14 C 0.271 3.729 15 H 0.044 0.956 16 C -0.559 4.559 17 H 0.093 0.907 18 C 0.014 3.986 19 N -0.875 5.875 20 Si 0.985 3.015 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.282 1.282 24 C 0.412 3.588 25 F -0.204 7.204 26 F -0.151 7.151 27 F -0.219 7.219 28 C 0.108 3.892 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.408 0.592 43 H 0.268 0.732 44 H 0.076 0.924 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.644 -6.510 7.546 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 C -0.237 4.237 4 O -0.297 6.297 5 C 0.025 3.975 6 H 0.073 0.927 7 C -0.146 4.146 8 C -0.161 4.161 9 C -0.023 4.023 10 N -0.363 5.363 11 C 0.398 3.602 12 O -0.508 6.508 13 N -0.375 5.375 14 C 0.163 3.837 15 H 0.061 0.939 16 C -0.596 4.596 17 H 0.111 0.889 18 C -0.191 4.191 19 N -0.509 5.509 20 Si 0.808 3.192 21 H -0.176 1.176 22 H -0.203 1.203 23 H -0.208 1.208 24 C 0.355 3.645 25 F -0.185 7.185 26 F -0.132 7.132 27 F -0.201 7.201 28 C -0.016 4.016 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.247 0.753 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.704 -5.611 7.203 19.037 hybrid contribution 1.295 0.058 -0.371 1.348 sum -15.409 -5.553 6.832 17.747 Atomic orbital electron populations 1.21834 0.91745 1.03071 1.03263 1.22364 0.96279 0.92335 0.87468 1.22459 1.00860 0.97185 1.03216 1.87901 1.35189 1.69964 1.36667 1.22573 0.82681 0.92673 0.99622 0.92728 1.21569 0.98273 0.94700 1.00010 1.21891 0.92583 0.98532 1.03115 1.22019 1.00343 0.83500 0.96456 1.47227 1.12301 1.27315 1.49423 1.16168 0.80987 0.83309 0.79761 1.90873 1.82385 1.23324 1.54200 1.45172 1.16222 1.27801 1.48269 1.19193 0.83944 0.93559 0.86961 0.93873 1.21237 1.15060 0.92996 1.30317 0.88870 1.26017 0.98075 0.99430 0.95556 1.70553 1.28537 1.22174 1.29642 0.85091 0.77584 0.78554 0.77961 1.17636 1.20345 1.20765 1.23369 0.82084 0.81492 0.77532 1.92975 1.86526 1.83100 1.55945 1.93372 1.61724 1.90598 1.67542 1.93069 1.76666 1.58839 1.91512 1.22188 0.81551 0.95279 1.02534 0.91745 0.89821 0.91646 0.92476 0.91521 0.93999 0.90483 0.89642 0.90120 0.91960 0.86746 0.89731 0.89282 0.75276 0.92181 0.90623 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.56 71.98 0.69 -1.42 16 2 C 0.07 1.47 3.34 30.59 0.10 1.57 16 3 C -0.18 -3.85 9.33 71.98 0.67 -3.18 16 4 O -0.38 -8.55 9.66 -148.98 -1.44 -9.99 16 5 C 0.08 1.91 2.77 30.81 0.09 1.99 16 6 H 0.05 1.36 7.37 -2.39 -0.02 1.34 16 7 C -0.11 -1.81 5.53 30.62 0.17 -1.64 16 8 C -0.12 -1.96 6.08 30.67 0.19 -1.77 16 9 C 0.10 2.09 6.43 86.36 0.56 2.65 16 10 N -0.62 -19.28 2.97 -836.07 -2.48 -21.76 16 11 C 0.70 29.15 7.91 179.06 1.42 30.57 16 12 O -0.63 -31.96 14.15 -3.99 -0.06 -32.02 16 13 N -0.72 -30.05 4.90 -461.42 -2.26 -32.31 16 14 C 0.27 13.88 2.20 44.25 0.10 13.97 16 15 H 0.04 2.56 7.65 -2.39 -0.02 2.54 16 16 C -0.56 -28.18 8.46 25.60 0.22 -27.96 16 17 H 0.09 4.29 7.74 -2.91 -0.02 4.26 16 18 C 0.01 0.74 5.20 84.65 0.44 1.18 16 19 N -0.88 -48.70 9.50 21.45 0.20 -48.50 16 20 Si 0.98 40.15 29.54 68.60 2.03 42.18 16 21 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 24 C 0.41 21.92 2.81 71.98 0.20 22.12 16 25 F -0.20 -10.17 16.94 44.97 0.76 -9.40 16 26 F -0.15 -8.69 12.91 44.97 0.58 -8.11 16 27 F -0.22 -11.84 15.50 44.97 0.70 -11.14 16 28 C 0.11 3.07 5.75 86.50 0.50 3.57 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.18 7.37 -2.39 -0.02 1.17 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.04 1.11 5.60 -2.38 -0.01 1.10 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.78 5.57 -2.39 -0.01 1.77 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.41 14.29 6.00 -92.71 -0.56 13.73 16 43 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.42 4.65 -2.39 -0.01 2.41 16 Total: -1.00 -67.93 362.57 3.83 -64.10 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.47 Total: 25.30 kcal Atomic # 6 Polarization: 36.32 SS G_CDS: 5.33 Total: 41.65 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -4.54 Total: -102.56 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -1.50 Total: -42.01 kcal Atomic # 9 Polarization: -30.69 SS G_CDS: 2.04 Total: -28.66 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -67.93 3.83 -64.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932895928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.144 kcal (2) G-P(sol) polarization free energy of solvation -67.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds