Wall clock time and date at job start Tue Mar 31 2020 21:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47233 * 2 1 4 4 O 1.42901 * 109.47191 * 120.00116 * 2 1 3 5 5 C 1.42903 * 113.99915 * 89.99560 * 4 2 1 6 6 H 1.08997 * 109.49842 * 330.06878 * 5 4 2 7 7 C 1.53038 * 109.49542 * 209.99786 * 5 4 2 8 8 C 1.53043 * 109.53332 * 178.68561 * 7 5 4 9 9 C 1.53184 * 109.31440 * 61.36719 * 8 7 5 10 10 N 1.46930 * 108.77854 * 305.36360 * 9 8 7 11 11 C 1.34769 * 120.63214 * 233.58812 * 10 9 8 12 12 O 1.21588 * 120.00264 * 185.02079 * 11 10 9 13 13 N 1.34784 * 120.00314 * 5.02083 * 11 10 9 14 14 C 1.46493 * 120.00270 * 174.67881 * 13 11 10 15 15 H 1.08998 * 109.47156 * 34.99980 * 14 13 11 16 16 C 1.50700 * 109.47057 * 154.99993 * 14 13 11 17 17 H 1.07998 * 119.99937 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99543 * 179.97438 * 16 14 13 19 19 N 1.31509 * 120.00404 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99775 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47094 * 59.99580 * 20 18 16 22 22 H 1.48498 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47007 * 299.99829 * 20 18 16 24 24 C 1.53001 * 109.47072 * 275.00012 * 14 13 11 25 25 F 1.39901 * 109.47342 * 59.99591 * 24 14 13 26 26 F 1.39894 * 109.47471 * 180.02562 * 24 14 13 27 27 F 1.39905 * 109.46692 * 299.99922 * 24 14 13 28 28 C 1.46925 * 118.73453 * 53.85698 * 10 9 8 29 29 H 1.09004 * 109.46569 * 300.00379 * 1 2 3 30 30 H 1.09002 * 109.47206 * 59.99876 * 1 2 3 31 31 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46628 * 240.00091 * 2 1 3 33 33 H 1.08994 * 109.47087 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47126 * 300.00174 * 3 2 1 35 35 H 1.09000 * 109.47013 * 59.99964 * 3 2 1 36 36 H 1.08998 * 109.45698 * 58.66789 * 7 5 4 37 37 H 1.09000 * 109.46015 * 298.70616 * 7 5 4 38 38 H 1.09004 * 109.49775 * 301.41461 * 8 7 5 39 39 H 1.08998 * 109.52076 * 181.33731 * 8 7 5 40 40 H 1.08997 * 109.58930 * 185.57697 * 9 8 7 41 41 H 1.09004 * 109.70498 * 65.22050 * 9 8 7 42 42 H 0.97005 * 119.99463 * 354.94971 * 13 11 10 43 43 H 0.97005 * 119.99862 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.58938 * 65.93411 * 28 10 9 45 45 H 1.09005 * 109.58592 * 186.35713 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 -2.0783 0.9886 6 1 1.4948 -2.4514 0.2460 7 6 1.9698 -2.7984 2.3191 8 6 2.1448 -4.3060 2.1220 9 6 3.5761 -4.5935 1.6581 10 7 3.8546 -3.7918 0.4587 11 6 4.3058 -4.3766 -0.6686 12 8 4.6192 -3.6934 -1.6244 13 7 4.4096 -5.7187 -0.7366 14 6 4.7881 -6.3611 -1.9976 15 1 5.5009 -5.7295 -2.5276 16 6 5.4193 -7.6990 -1.7100 17 1 5.5281 -8.0367 -0.6900 18 6 5.8579 -8.4919 -2.7493 19 7 5.7249 -8.0809 -3.9914 20 14 6.6397 -10.1506 -2.3930 21 1 5.6683 -11.0107 -1.6707 22 1 7.0222 -10.8024 -3.6713 23 1 7.8495 -9.9576 -1.5537 24 6 3.5418 -6.5605 -2.8625 25 9 2.9557 -5.3185 -3.1293 26 9 3.9030 -7.1746 -4.0664 27 9 2.6269 -7.3713 -2.1821 28 6 3.6374 -2.3397 0.5135 29 1 -0.3632 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 0.9594 -2.5933 2.6729 37 1 2.6911 -2.4421 3.0545 38 1 1.4404 -4.6586 1.3686 39 1 1.9575 -4.8207 3.0644 40 1 3.6778 -5.6525 1.4214 41 1 4.2789 -4.3264 2.4473 42 1 4.2300 -6.2594 0.0485 43 1 6.0338 -8.6386 -4.7225 44 1 4.3435 -1.8908 1.2121 45 1 3.7795 -1.9113 -0.4787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932895929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:25 Heat of formation + Delta-G solvation = -214.814271 kcal Electronic energy + Delta-G solvation = -31910.282777 eV Core-core repulsion = 27127.627116 eV Total energy + Delta-G solvation = -4782.655661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.34228 -45.99893 -45.60621 -40.15994 -38.66091 -36.67081 -34.71572 -33.28576 -32.49001 -32.05145 -29.91568 -28.14290 -27.38427 -25.16514 -24.53864 -23.19529 -21.77151 -21.24230 -20.66910 -19.32330 -18.32851 -16.97117 -16.89278 -16.72097 -16.61593 -16.06808 -15.51220 -15.19695 -15.12049 -14.77798 -14.53353 -14.31306 -13.82984 -13.65438 -13.31268 -13.22131 -12.92565 -12.88577 -12.67901 -12.47894 -12.40130 -12.36955 -12.28150 -12.19961 -12.03413 -11.92761 -11.81037 -11.52851 -11.17009 -11.10811 -11.06678 -10.87362 -10.85571 -10.80039 -10.49049 -10.38248 -9.78435 -9.65843 -9.50617 -8.72564 -8.48710 -8.09530 -6.23270 -4.47372 2.91705 3.19650 3.24632 3.26388 3.56094 3.71537 4.17250 4.38310 4.58716 4.67530 4.74220 4.80028 4.87457 4.89600 4.93554 5.01238 5.08763 5.13760 5.37595 5.42315 5.47526 5.59333 5.65535 5.67442 5.71505 5.74674 5.78529 5.84460 5.88327 5.89385 5.97407 6.05043 6.06704 6.15956 6.22613 6.62578 6.87044 7.18702 7.21359 7.35252 7.59759 7.64960 8.48333 8.58632 9.12499 9.23577 10.68247 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.003321 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.989504 B = 8429.227067 C = 8978.215187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.076 3.924 3 C -0.148 4.148 4 O -0.374 6.374 5 C 0.076 3.924 6 H 0.065 0.935 7 C -0.112 4.112 8 C -0.133 4.133 9 C 0.109 3.891 10 N -0.632 5.632 11 C 0.704 3.296 12 O -0.583 6.583 13 N -0.726 5.726 14 C 0.261 3.739 15 H 0.087 0.913 16 C -0.552 4.552 17 H 0.076 0.924 18 C 0.065 3.935 19 N -0.839 5.839 20 Si 0.915 3.085 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.416 3.584 25 F -0.219 7.219 26 F -0.137 7.137 27 F -0.210 7.210 28 C 0.114 3.886 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.393 0.607 43 H 0.269 0.731 44 H 0.068 0.932 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 10.377 11.441 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.019 3.981 3 C -0.205 4.205 4 O -0.293 6.293 5 C 0.017 3.983 6 H 0.083 0.917 7 C -0.150 4.150 8 C -0.171 4.171 9 C -0.014 4.014 10 N -0.373 5.373 11 C 0.406 3.594 12 O -0.460 6.460 13 N -0.380 5.380 14 C 0.154 3.846 15 H 0.104 0.896 16 C -0.589 4.589 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.473 5.473 20 Si 0.742 3.258 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.359 3.641 25 F -0.201 7.201 26 F -0.118 7.118 27 F -0.192 7.192 28 C -0.010 4.010 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.230 0.770 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.556 10.916 10.621 17.002 hybrid contribution -0.150 -1.338 0.092 1.349 sum -7.707 9.579 10.713 16.307 Atomic orbital electron populations 1.22297 0.96106 1.02334 1.02359 1.22163 0.93526 0.93886 0.88542 1.21848 1.01977 0.94441 1.02261 1.87915 1.86220 1.19708 1.35428 1.22583 0.96356 0.81425 0.97930 0.91698 1.21548 1.02649 0.94325 0.96463 1.21923 0.97289 0.95693 1.02233 1.21639 0.96085 0.95989 0.87711 1.47161 1.71037 1.07261 1.11805 1.15953 0.78299 0.82839 0.82336 1.90895 1.55831 1.62790 1.36469 1.45434 1.73586 1.04149 1.14856 1.19614 0.88595 0.96048 0.80299 0.89589 1.20825 1.42560 1.01020 0.94501 0.90596 1.25073 0.95261 0.99304 0.94715 1.70392 1.40517 1.37654 0.98691 0.86273 0.79585 0.82131 0.77844 1.19844 1.20873 1.19781 1.23218 0.86409 0.72265 0.82183 1.93060 1.87023 1.45199 1.94802 1.93402 1.90001 1.81968 1.46409 1.92982 1.70698 1.74754 1.80780 1.21875 0.95634 0.80194 1.03330 0.91949 0.91697 0.92521 0.91742 0.91847 0.91344 0.91983 0.91220 0.90944 0.91131 0.90064 0.89868 0.91301 0.77026 0.92057 0.91354 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.52 37.16 0.35 -1.26 16 2 C 0.08 0.82 3.14 -26.73 -0.08 0.73 16 3 C -0.15 -1.33 9.56 37.16 0.36 -0.97 16 4 O -0.37 -4.50 9.64 -35.23 -0.34 -4.84 16 5 C 0.08 0.93 2.56 -26.39 -0.07 0.86 16 6 H 0.06 0.86 7.63 -51.93 -0.40 0.47 16 7 C -0.11 -1.13 5.53 -26.69 -0.15 -1.28 16 8 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 9 C 0.11 1.29 6.43 -3.71 -0.02 1.26 16 10 N -0.63 -9.93 2.97 -178.23 -0.53 -10.46 16 11 C 0.70 14.50 7.74 -86.92 -0.67 13.82 16 12 O -0.58 -14.24 14.61 5.29 0.08 -14.17 16 13 N -0.73 -15.12 4.90 -59.82 -0.29 -15.41 16 14 C 0.26 6.53 2.23 -69.09 -0.15 6.38 16 15 H 0.09 2.43 7.51 -51.93 -0.39 2.04 16 16 C -0.55 -14.05 8.47 -34.44 -0.29 -14.35 16 17 H 0.08 1.81 7.74 -52.49 -0.41 1.41 16 18 C 0.07 1.70 5.20 -17.82 -0.09 1.60 16 19 N -0.84 -23.00 9.50 55.43 0.53 -22.48 16 20 Si 0.92 19.98 29.54 -169.99 -5.02 14.96 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 C 0.42 10.72 2.81 37.16 0.10 10.82 16 25 F -0.22 -5.62 15.89 2.25 0.04 -5.58 16 26 F -0.14 -3.80 12.91 2.25 0.03 -3.77 16 27 F -0.21 -5.18 16.94 2.25 0.04 -5.14 16 28 C 0.11 1.62 6.07 -3.49 -0.02 1.60 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 7.97 -51.93 -0.41 0.14 16 32 H 0.06 0.76 7.74 -51.93 -0.40 0.35 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.98 5.57 -51.93 -0.29 0.69 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.39 7.08 6.00 -40.82 -0.24 6.83 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.52 6.97 -51.93 -0.36 1.16 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -30.61 368.53 -7.51 -38.13 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.69 Total: 5.44 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: -0.90 Total: 17.76 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.30 Total: -48.35 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.26 Total: -19.00 kcal Atomic # 9 Polarization: -14.60 SS G_CDS: 0.10 Total: -14.49 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.61 -7.51 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932895929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.689 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds