Wall clock time and date at job start Tue Mar 31 2020 21:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47233 * 2 1 4 4 O 1.42901 * 109.47191 * 120.00116 * 2 1 3 5 5 C 1.42903 * 113.99915 * 89.99560 * 4 2 1 6 6 H 1.08997 * 109.49842 * 330.06878 * 5 4 2 7 7 C 1.53038 * 109.49542 * 209.99786 * 5 4 2 8 8 C 1.53043 * 109.53332 * 178.68561 * 7 5 4 9 9 C 1.53184 * 109.31440 * 61.36719 * 8 7 5 10 10 N 1.46930 * 108.77854 * 305.36360 * 9 8 7 11 11 C 1.34769 * 120.63214 * 233.58812 * 10 9 8 12 12 O 1.21588 * 120.00264 * 185.02079 * 11 10 9 13 13 N 1.34784 * 120.00314 * 5.02083 * 11 10 9 14 14 C 1.46493 * 120.00270 * 174.67881 * 13 11 10 15 15 H 1.08998 * 109.47156 * 34.99980 * 14 13 11 16 16 C 1.50700 * 109.47057 * 154.99993 * 14 13 11 17 17 H 1.07998 * 119.99937 * 359.97438 * 16 14 13 18 18 C 1.37878 * 119.99543 * 179.97438 * 16 14 13 19 19 N 1.31509 * 120.00404 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99775 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47094 * 59.99580 * 20 18 16 22 22 H 1.48498 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47007 * 299.99829 * 20 18 16 24 24 C 1.53001 * 109.47072 * 275.00012 * 14 13 11 25 25 F 1.39901 * 109.47342 * 59.99591 * 24 14 13 26 26 F 1.39894 * 109.47471 * 180.02562 * 24 14 13 27 27 F 1.39905 * 109.46692 * 299.99922 * 24 14 13 28 28 C 1.46925 * 118.73453 * 53.85698 * 10 9 8 29 29 H 1.09004 * 109.46569 * 300.00379 * 1 2 3 30 30 H 1.09002 * 109.47206 * 59.99876 * 1 2 3 31 31 H 1.08998 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46628 * 240.00091 * 2 1 3 33 33 H 1.08994 * 109.47087 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47126 * 300.00174 * 3 2 1 35 35 H 1.09000 * 109.47013 * 59.99964 * 3 2 1 36 36 H 1.08998 * 109.45698 * 58.66789 * 7 5 4 37 37 H 1.09000 * 109.46015 * 298.70616 * 7 5 4 38 38 H 1.09004 * 109.49775 * 301.41461 * 8 7 5 39 39 H 1.08998 * 109.52076 * 181.33731 * 8 7 5 40 40 H 1.08997 * 109.58930 * 185.57697 * 9 8 7 41 41 H 1.09004 * 109.70498 * 65.22050 * 9 8 7 42 42 H 0.97005 * 119.99463 * 354.94971 * 13 11 10 43 43 H 0.97005 * 119.99862 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.58938 * 65.93411 * 28 10 9 45 45 H 1.09005 * 109.58592 * 186.35713 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 -2.0783 0.9886 6 1 1.4948 -2.4514 0.2460 7 6 1.9698 -2.7984 2.3191 8 6 2.1448 -4.3060 2.1220 9 6 3.5761 -4.5935 1.6581 10 7 3.8546 -3.7918 0.4587 11 6 4.3058 -4.3766 -0.6686 12 8 4.6192 -3.6934 -1.6244 13 7 4.4096 -5.7187 -0.7366 14 6 4.7881 -6.3611 -1.9976 15 1 5.5009 -5.7295 -2.5276 16 6 5.4193 -7.6990 -1.7100 17 1 5.5281 -8.0367 -0.6900 18 6 5.8579 -8.4919 -2.7493 19 7 5.7249 -8.0809 -3.9914 20 14 6.6397 -10.1506 -2.3930 21 1 5.6683 -11.0107 -1.6707 22 1 7.0222 -10.8024 -3.6713 23 1 7.8495 -9.9576 -1.5537 24 6 3.5418 -6.5605 -2.8625 25 9 2.9557 -5.3185 -3.1293 26 9 3.9030 -7.1746 -4.0664 27 9 2.6269 -7.3713 -2.1821 28 6 3.6374 -2.3397 0.5135 29 1 -0.3632 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 0.9594 -2.5933 2.6729 37 1 2.6911 -2.4421 3.0545 38 1 1.4404 -4.6586 1.3686 39 1 1.9575 -4.8207 3.0644 40 1 3.6778 -5.6525 1.4214 41 1 4.2789 -4.3264 2.4473 42 1 4.2300 -6.2594 0.0485 43 1 6.0338 -8.6386 -4.7225 44 1 4.3435 -1.8908 1.2121 45 1 3.7795 -1.9113 -0.4787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932895929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:25 Heat of formation + Delta-G solvation = -233.494987 kcal Electronic energy + Delta-G solvation = -31911.092833 eV Core-core repulsion = 27127.627116 eV Total energy + Delta-G solvation = -4783.465717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.43223 -48.06949 -47.73871 -41.51966 -39.81599 -37.83653 -36.55487 -34.66701 -33.99825 -33.07011 -31.13737 -29.80750 -28.13391 -26.64613 -26.30770 -24.20104 -23.49461 -22.13128 -22.00676 -20.84124 -19.71932 -18.91795 -18.79046 -18.62975 -17.89755 -17.67864 -16.99878 -16.55759 -16.54294 -16.10752 -15.87666 -15.36988 -15.15483 -14.99473 -14.87605 -14.61658 -14.48897 -14.42674 -14.32014 -14.20866 -14.12966 -14.02234 -13.84598 -13.51184 -13.09713 -13.08679 -13.02217 -12.83593 -12.76601 -12.60075 -12.38992 -12.24155 -11.99275 -11.96466 -11.71233 -11.58696 -11.45404 -11.20751 -10.73808 -10.67238 -10.18203 -9.49317 -8.20592 -6.52082 1.45832 1.50042 1.53120 1.60067 2.06499 2.36607 2.51175 2.61796 2.94257 2.98869 3.71272 3.77513 3.78209 3.86778 3.93643 3.98271 4.01015 4.12276 4.15765 4.18945 4.25538 4.48675 4.56006 4.63431 4.73210 4.75016 4.85988 4.86913 4.88156 4.91847 4.95810 5.04017 5.14334 5.25046 5.29816 5.34756 5.41208 5.44541 5.56932 5.64961 5.96216 6.25314 6.52654 7.00732 7.18363 7.56830 8.72020 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.003321 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.989504 B = 8429.227067 C = 8978.215187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.068 3.932 3 C -0.145 4.145 4 O -0.378 6.378 5 C 0.083 3.917 6 H 0.048 0.952 7 C -0.106 4.106 8 C -0.125 4.125 9 C 0.100 3.900 10 N -0.623 5.623 11 C 0.698 3.302 12 O -0.630 6.630 13 N -0.718 5.718 14 C 0.269 3.731 15 H 0.045 0.955 16 C -0.562 4.562 17 H 0.093 0.907 18 C 0.015 3.985 19 N -0.875 5.875 20 Si 0.985 3.015 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.262 1.262 24 C 0.413 3.587 25 F -0.221 7.221 26 F -0.150 7.150 27 F -0.202 7.202 28 C 0.113 3.887 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.408 0.592 43 H 0.269 0.731 44 H 0.083 0.917 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.446 9.828 14.312 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 C -0.202 4.202 4 O -0.296 6.296 5 C 0.024 3.976 6 H 0.067 0.933 7 C -0.144 4.144 8 C -0.163 4.163 9 C -0.022 4.022 10 N -0.362 5.362 11 C 0.399 3.601 12 O -0.511 6.511 13 N -0.374 5.374 14 C 0.161 3.839 15 H 0.063 0.937 16 C -0.598 4.598 17 H 0.111 0.889 18 C -0.190 4.190 19 N -0.509 5.509 20 Si 0.808 3.192 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.187 1.187 24 C 0.357 3.643 25 F -0.203 7.203 26 F -0.131 7.131 27 F -0.184 7.184 28 C -0.011 4.011 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.248 0.752 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.195 10.381 13.574 18.952 hybrid contribution 0.010 -1.067 -0.793 1.330 sum -8.185 9.314 12.781 17.807 Atomic orbital electron populations 1.22255 0.94789 1.02144 1.03410 1.22327 0.94649 0.94526 0.87427 1.21846 1.01510 0.93396 1.03423 1.87907 1.86342 1.19501 1.35883 1.22499 0.94157 0.81935 0.99020 0.93348 1.21553 1.03843 0.93987 0.94999 1.21909 0.95228 0.95841 1.03363 1.22027 0.98266 0.95448 0.86462 1.47211 1.69394 1.08106 1.11515 1.16156 0.78287 0.82485 0.83138 1.90858 1.57845 1.63666 1.38737 1.45154 1.73720 1.04512 1.14061 1.19192 0.87540 0.95731 0.81430 0.93710 1.21177 1.42355 1.00933 0.95368 0.88925 1.26014 0.95552 1.03066 0.94396 1.70532 1.41614 1.39051 0.99692 0.85193 0.78959 0.77420 0.77646 1.18856 1.21066 1.18683 1.23359 0.86874 0.72153 0.81948 1.93051 1.87079 1.45381 1.94838 1.93376 1.90193 1.82227 1.47311 1.92982 1.70406 1.74508 1.80503 1.21976 0.97750 0.79217 1.02151 0.91037 0.90486 0.93321 0.93729 0.92594 0.89892 0.91095 0.89870 0.89685 0.92569 0.86590 0.89790 0.88654 0.75239 0.92141 0.89855 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.52 71.98 0.69 -2.28 16 2 C 0.07 1.44 3.14 30.60 0.10 1.54 16 3 C -0.14 -2.47 9.56 71.98 0.69 -1.78 16 4 O -0.38 -8.74 9.64 -148.98 -1.44 -10.18 16 5 C 0.08 1.96 2.56 30.82 0.08 2.04 16 6 H 0.05 1.30 7.63 -2.39 -0.02 1.28 16 7 C -0.11 -1.83 5.53 30.62 0.17 -1.66 16 8 C -0.13 -2.08 6.08 30.67 0.19 -1.90 16 9 C 0.10 2.10 6.43 86.36 0.56 2.66 16 10 N -0.62 -19.31 2.97 -836.07 -2.48 -21.79 16 11 C 0.70 29.34 7.74 179.05 1.39 30.72 16 12 O -0.63 -32.33 14.61 -3.99 -0.06 -32.39 16 13 N -0.72 -30.13 4.90 -461.42 -2.26 -32.39 16 14 C 0.27 13.80 2.23 44.25 0.10 13.89 16 15 H 0.05 2.68 7.51 -2.39 -0.02 2.66 16 16 C -0.56 -28.46 8.47 25.60 0.22 -28.25 16 17 H 0.09 4.28 7.74 -2.91 -0.02 4.25 16 18 C 0.02 0.78 5.20 84.66 0.44 1.22 16 19 N -0.87 -48.79 9.50 21.45 0.20 -48.59 16 20 Si 0.98 40.29 29.54 68.60 2.03 42.31 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 C 0.41 21.78 2.81 71.98 0.20 21.98 16 25 F -0.22 -11.74 15.89 44.97 0.71 -11.03 16 26 F -0.15 -8.56 12.91 44.97 0.58 -7.98 16 27 F -0.20 -9.95 16.94 44.97 0.76 -9.18 16 28 C 0.11 3.22 6.07 86.51 0.53 3.75 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 0.92 7.97 -2.39 -0.02 0.90 16 32 H 0.04 1.11 7.74 -2.39 -0.02 1.09 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.77 5.57 -2.39 -0.01 1.75 16 41 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.41 14.31 6.00 -92.70 -0.56 13.75 16 43 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 44 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.06 2.15 6.97 -2.38 -0.02 2.13 16 Total: -1.00 -68.00 368.53 3.84 -64.17 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.45 Total: 25.12 kcal Atomic # 6 Polarization: 36.59 SS G_CDS: 5.33 Total: 41.92 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.54 Total: -102.77 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.49 Total: -42.57 kcal Atomic # 9 Polarization: -30.25 SS G_CDS: 2.06 Total: -28.19 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Total: -68.00 3.84 -64.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932895929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.328 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds