Wall clock time and date at job start Tue Mar 31 2020 21:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47160 * 2 1 4 4 O 1.42899 * 109.47074 * 120.00072 * 2 1 3 5 5 C 1.42900 * 114.00036 * 150.00079 * 4 2 1 6 6 H 1.08994 * 109.50127 * 29.93595 * 5 4 2 7 7 C 1.53045 * 109.49517 * 150.00285 * 5 4 2 8 8 C 1.53050 * 109.53372 * 181.34997 * 7 5 4 9 9 C 1.53186 * 109.30998 * 298.62835 * 8 7 5 10 10 N 1.46930 * 108.77939 * 54.63823 * 9 8 7 11 11 C 1.34774 * 120.63411 * 126.36195 * 10 9 8 12 12 O 1.21580 * 120.00414 * 174.91110 * 11 10 9 13 13 N 1.34779 * 119.99793 * 354.91819 * 11 10 9 14 14 C 1.46497 * 120.00010 * 184.95880 * 13 11 10 15 15 H 1.09002 * 109.46966 * 34.99668 * 14 13 11 16 16 C 1.50693 * 109.47295 * 154.99833 * 14 13 11 17 17 H 1.07999 * 120.00228 * 114.69887 * 16 14 13 18 18 C 1.37882 * 120.00232 * 294.69184 * 16 14 13 19 19 N 1.31512 * 120.00015 * 184.80562 * 18 16 14 20 20 Si 1.86796 * 119.99588 * 4.81388 * 18 16 14 21 21 H 1.48498 * 109.47571 * 94.83752 * 20 18 16 22 22 H 1.48495 * 109.47261 * 214.83781 * 20 18 16 23 23 H 1.48504 * 109.47145 * 334.83782 * 20 18 16 24 24 C 1.53004 * 109.47100 * 274.99973 * 14 13 11 25 25 F 1.39902 * 109.47286 * 65.03327 * 24 14 13 26 26 F 1.39898 * 109.47102 * 185.03817 * 24 14 13 27 27 F 1.39898 * 109.46876 * 305.03392 * 24 14 13 28 28 C 1.46932 * 118.73552 * 306.64701 * 10 9 8 29 29 H 1.08999 * 109.46978 * 299.99852 * 1 2 3 30 30 H 1.08999 * 109.46928 * 60.00309 * 1 2 3 31 31 H 1.09003 * 109.47358 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47219 * 239.99669 * 2 1 3 33 33 H 1.08997 * 109.47325 * 59.99733 * 3 2 1 34 34 H 1.09006 * 109.46956 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46948 * 299.99679 * 3 2 1 36 36 H 1.08993 * 109.46434 * 61.32544 * 7 5 4 37 37 H 1.09000 * 109.45602 * 301.36376 * 7 5 4 38 38 H 1.08997 * 109.49283 * 178.67661 * 8 7 5 39 39 H 1.08997 * 109.52185 * 58.59778 * 8 7 5 40 40 H 1.08998 * 109.58976 * 294.85135 * 9 8 7 41 41 H 1.09000 * 109.58890 * 174.42303 * 9 8 7 42 42 H 0.97001 * 119.99775 * 4.95864 * 13 11 10 43 43 H 0.97003 * 119.99758 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.58271 * 173.14084 * 28 10 9 45 45 H 1.09000 * 109.58024 * 293.56140 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3245 0.9886 6 1 3.8530 -0.7840 0.2461 7 6 4.0217 -1.3474 2.3193 8 6 5.3851 -2.0143 2.1220 9 6 5.1796 -3.4596 1.6578 10 7 4.3310 -3.4550 0.4583 11 6 4.7326 -4.0741 -0.6694 12 8 3.9838 -4.1432 -1.6248 13 7 5.9644 -4.6168 -0.7381 14 6 6.4415 -5.1935 -1.9975 15 1 6.0517 -4.6129 -2.8336 16 6 7.9479 -5.1641 -2.0246 17 1 8.5061 -6.0886 -2.0278 18 6 8.6137 -3.9568 -2.0454 19 7 9.9231 -3.9300 -2.1644 20 14 7.6556 -2.3595 -1.9044 21 1 7.6298 -1.9212 -0.4858 22 1 8.3096 -1.3152 -2.7331 23 1 6.2657 -2.5720 -2.3822 24 6 5.9575 -6.6404 -2.1116 25 9 4.5616 -6.6595 -2.2021 26 9 6.5071 -7.2271 -3.2566 27 9 6.3614 -7.3578 -0.9805 28 6 3.0390 -2.7572 0.5098 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 3.4456 -1.9091 3.0545 37 1 4.1647 -0.3265 2.6732 38 1 5.9323 -2.0092 3.0647 39 1 5.9525 -1.4674 1.3690 40 1 4.6927 -4.0314 2.4476 41 1 6.1445 -3.9080 1.4209 42 1 6.5349 -4.6256 0.0463 43 1 10.3915 -3.0806 -2.1787 44 1 2.5920 -2.7424 -0.4842 45 1 2.3739 -3.2707 1.2042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932895930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:28 Heat of formation + Delta-G solvation = -234.139751 kcal Electronic energy + Delta-G solvation = -32126.392402 eV Core-core repulsion = 27342.898725 eV Total energy + Delta-G solvation = -4783.493676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.04048 -46.54516 -46.53212 -40.24893 -38.74852 -36.74716 -34.94308 -33.30952 -32.47472 -32.08667 -30.13585 -28.63941 -27.42149 -25.19228 -25.00490 -23.21118 -21.68098 -21.26741 -20.76465 -19.33290 -18.53758 -17.62163 -17.51299 -16.89030 -16.75512 -16.42754 -15.89519 -15.49834 -15.13482 -14.65021 -14.51626 -14.37451 -13.88553 -13.68504 -13.44711 -13.43660 -13.30015 -13.06337 -12.99973 -12.95039 -12.80021 -12.72904 -12.64647 -12.61060 -12.40964 -12.23103 -12.01685 -11.75972 -11.56112 -11.24472 -11.07210 -11.03132 -10.87744 -10.64806 -10.50668 -10.18038 -9.88408 -9.81425 -9.62629 -9.04593 -8.60611 -8.20407 -6.54013 -4.67698 2.84309 3.04067 3.16329 3.27588 3.48654 3.61082 3.93948 4.09613 4.23781 4.63649 4.71996 4.78348 4.83738 4.85887 4.96302 5.00519 5.04303 5.07343 5.12466 5.22906 5.37022 5.37598 5.39240 5.50258 5.56700 5.62849 5.65251 5.70815 5.76596 5.78383 5.86757 5.94928 6.02139 6.04703 6.16748 6.35487 6.63723 6.88898 7.11806 7.17021 7.33095 7.87819 8.48910 8.50322 8.99730 9.08010 10.54072 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.004252 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.370668 B = 6582.880443 C = 7308.363707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.174 4.174 4 O -0.373 6.373 5 C 0.075 3.925 6 H 0.063 0.937 7 C -0.111 4.111 8 C -0.136 4.136 9 C 0.108 3.892 10 N -0.633 5.633 11 C 0.697 3.303 12 O -0.584 6.584 13 N -0.732 5.732 14 C 0.222 3.778 15 H 0.090 0.910 16 C -0.536 4.536 17 H 0.096 0.904 18 C 0.096 3.904 19 N -0.862 5.862 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.289 1.289 23 H -0.254 1.254 24 C 0.440 3.560 25 F -0.191 7.191 26 F -0.185 7.185 27 F -0.192 7.192 28 C 0.113 3.887 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.395 0.605 43 H 0.274 0.726 44 H 0.092 0.908 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.824 7.603 8.838 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 C -0.232 4.232 4 O -0.291 6.291 5 C 0.016 3.984 6 H 0.081 0.919 7 C -0.149 4.149 8 C -0.174 4.174 9 C -0.016 4.016 10 N -0.373 5.373 11 C 0.399 3.601 12 O -0.462 6.462 13 N -0.390 5.390 14 C 0.118 3.882 15 H 0.107 0.893 16 C -0.574 4.574 17 H 0.114 0.886 18 C -0.113 4.113 19 N -0.495 5.495 20 Si 0.704 3.296 21 H -0.198 1.198 22 H -0.215 1.215 23 H -0.178 1.178 24 C 0.385 3.615 25 F -0.172 7.172 26 F -0.167 7.167 27 F -0.173 7.173 28 C -0.012 4.012 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.234 0.766 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.303 7.627 8.257 16.664 hybrid contribution 0.084 0.677 0.279 0.737 sum -12.218 8.304 8.536 17.062 Atomic orbital electron populations 1.21848 0.93548 1.02817 1.02297 1.22160 0.95040 0.92420 0.88509 1.22300 1.01601 0.96834 1.02415 1.87922 1.36520 1.69310 1.35376 1.22411 0.85059 0.92882 0.98049 0.91936 1.21547 0.95338 1.01650 0.96370 1.21957 0.96931 0.96106 1.02425 1.21670 0.95353 0.96909 0.87657 1.47274 1.20556 1.57587 1.11863 1.16290 0.82812 0.78534 0.82461 1.90875 1.54102 1.64731 1.36475 1.47063 1.14355 1.62061 1.15565 1.20182 0.97197 0.84543 0.86279 0.89251 1.20841 0.86058 0.96317 1.54172 0.88642 1.24919 0.94808 0.99212 0.92358 1.69878 1.07368 1.27564 1.44677 0.86818 0.81386 0.82539 0.78842 1.19768 1.21513 1.17811 1.21538 0.74447 0.92536 0.73016 1.93160 1.30942 1.97188 1.95929 1.93105 1.85700 1.86340 1.51509 1.93070 1.90531 1.81187 1.52560 1.21701 0.84839 0.91301 1.03319 0.91932 0.91337 0.91848 0.91869 0.91871 0.92545 0.91676 0.90828 0.91159 0.89877 0.91202 0.91073 0.89704 0.76609 0.91585 0.89004 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.56 37.16 0.36 -0.97 16 2 C 0.08 0.83 3.13 -26.74 -0.08 0.74 16 3 C -0.17 -1.65 9.52 37.15 0.35 -1.30 16 4 O -0.37 -4.58 9.64 -35.23 -0.34 -4.92 16 5 C 0.07 0.95 2.54 -26.83 -0.07 0.89 16 6 H 0.06 0.87 7.63 -51.93 -0.40 0.47 16 7 C -0.11 -1.21 5.54 -26.68 -0.15 -1.36 16 8 C -0.14 -1.54 6.08 -26.61 -0.16 -1.70 16 9 C 0.11 1.39 6.43 -3.71 -0.02 1.37 16 10 N -0.63 -10.33 2.98 -178.76 -0.53 -10.86 16 11 C 0.70 14.24 7.14 -86.92 -0.62 13.62 16 12 O -0.58 -13.73 14.14 5.30 0.07 -13.65 16 13 N -0.73 -15.14 2.80 -59.82 -0.17 -15.31 16 14 C 0.22 5.14 1.36 -69.09 -0.09 5.05 16 15 H 0.09 2.21 6.54 -51.93 -0.34 1.87 16 16 C -0.54 -13.64 8.65 -34.44 -0.30 -13.94 16 17 H 0.10 2.65 7.95 -52.49 -0.42 2.23 16 18 C 0.10 2.48 5.47 -17.82 -0.10 2.38 16 19 N -0.86 -23.48 13.96 55.43 0.77 -22.70 16 20 Si 0.88 19.90 26.04 -169.99 -4.43 15.47 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.25 -6.01 5.82 56.52 0.33 -5.68 16 24 C 0.44 9.89 2.79 37.16 0.10 10.00 16 25 F -0.19 -4.32 15.63 2.25 0.04 -4.28 16 26 F -0.18 -4.19 16.86 2.25 0.04 -4.15 16 27 F -0.19 -4.16 16.97 2.25 0.04 -4.13 16 28 C 0.11 1.64 6.01 -3.93 -0.02 1.62 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.74 7.69 -51.93 -0.40 0.34 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.57 7.97 -51.93 -0.41 0.16 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.13 5.56 -51.93 -0.29 0.84 16 42 H 0.40 7.49 6.04 -40.82 -0.25 7.24 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.09 1.51 6.93 -51.93 -0.36 1.15 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -29.57 367.45 -6.49 -36.07 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.72 Total: 6.55 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: -0.81 Total: 16.39 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.07 Total: -48.88 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.26 Total: -18.58 kcal Atomic # 9 Polarization: -12.67 SS G_CDS: 0.11 Total: -12.56 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.43 Total: 15.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.57 -6.49 -36.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932895930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.072 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds