Wall clock time and date at job start Tue Mar 31 2020 21:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 O 1.42906 * 109.47151 * 119.99454 * 2 1 3 5 5 C 1.42901 * 113.99805 * 90.00041 * 4 2 1 6 6 H 1.09007 * 109.52401 * 30.08141 * 5 4 2 7 7 C 1.53035 * 109.49736 * 150.16365 * 5 4 2 8 8 C 1.53042 * 109.54116 * 181.31678 * 7 5 4 9 9 C 1.53191 * 109.31108 * 298.63616 * 8 7 5 10 10 N 1.47203 * 108.85481 * 54.64896 * 9 8 7 11 11 C 1.34780 * 120.81371 * 126.34097 * 10 9 8 12 12 O 1.21589 * 119.99926 * 175.10923 * 11 10 9 13 13 N 1.34779 * 120.00006 * 355.11283 * 11 10 9 14 14 C 1.46502 * 119.99811 * 185.12362 * 13 11 10 15 15 H 1.09007 * 109.47043 * 324.99429 * 14 13 11 16 16 C 1.50699 * 109.46968 * 204.99781 * 14 13 11 17 17 H 1.08000 * 120.00166 * 359.97438 * 16 14 13 18 18 C 1.37878 * 120.00168 * 179.97438 * 16 14 13 19 19 N 1.31512 * 119.99869 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 120.00130 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46781 * 60.00131 * 20 18 16 22 22 H 1.48500 * 109.46951 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46893 * 300.00131 * 20 18 16 24 24 C 1.53002 * 109.47325 * 84.99406 * 14 13 11 25 25 F 1.39903 * 109.46771 * 60.00298 * 24 14 13 26 26 F 1.39899 * 109.46971 * 179.97438 * 24 14 13 27 27 F 1.39897 * 109.47036 * 300.00251 * 24 14 13 28 28 C 1.46925 * 118.55651 * 306.47605 * 10 9 8 29 29 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47034 * 300.00043 * 1 2 3 31 31 H 1.08993 * 109.47101 * 60.00599 * 1 2 3 32 32 H 1.08996 * 109.47226 * 239.99224 * 2 1 3 33 33 H 1.09003 * 109.47093 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47006 * 299.99151 * 3 2 1 35 35 H 1.08996 * 109.47762 * 59.99552 * 3 2 1 36 36 H 1.08998 * 109.46153 * 301.33964 * 7 5 4 37 37 H 1.09004 * 109.46211 * 61.29509 * 7 5 4 38 38 H 1.09007 * 109.49484 * 58.58246 * 8 7 5 39 39 H 1.08992 * 109.49910 * 178.65067 * 8 7 5 40 40 H 1.09000 * 109.58682 * 174.41854 * 9 8 7 41 41 H 1.08993 * 109.58806 * 294.84472 * 9 8 7 42 42 H 0.96990 * 119.99975 * 5.11655 * 13 11 10 43 43 H 0.97001 * 120.00328 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.58733 * 293.68018 * 28 10 9 45 45 H 1.09006 * 109.58645 * 173.40109 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.2001 -2.0781 0.9888 6 1 2.4643 -2.2807 -0.0492 7 6 3.3271 -2.5586 1.9059 8 6 3.5576 -4.0564 1.6921 9 6 2.2808 -4.8220 2.0532 10 7 1.1585 -4.2677 1.2785 11 6 0.3783 -5.0674 0.5247 12 8 -0.5973 -4.6095 -0.0382 13 7 0.6796 -6.3746 0.3948 14 6 -0.1009 -7.2196 -0.5125 15 1 -1.1418 -6.8958 -0.5052 16 6 -0.0180 -8.6543 -0.0588 17 1 0.5588 -8.9111 0.8174 18 6 -0.6785 -9.6391 -0.7623 19 7 -1.3813 -9.3263 -1.8290 20 14 -0.5750 -11.4176 -0.2004 21 1 -1.1191 -11.5340 1.1765 22 1 -1.3673 -12.2738 -1.1192 23 1 0.8429 -11.8584 -0.2114 24 6 0.4605 -7.0998 -1.9307 25 9 1.7964 -7.5153 -1.9400 26 9 -0.2846 -7.9071 -2.7969 27 9 0.3835 -5.7679 -2.3518 28 6 0.9079 -2.8214 1.3419 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 4.2419 -2.0136 1.6732 37 1 3.0516 -2.3782 2.9450 38 1 3.8090 -4.2403 0.6475 39 1 4.3763 -4.3929 2.3281 40 1 2.4061 -5.8770 1.8094 41 1 2.0781 -4.7127 3.1185 42 1 1.4132 -6.7559 0.9019 43 1 -1.8457 -10.0191 -2.3242 44 1 0.5932 -2.5488 2.3493 45 1 0.1266 -2.5543 0.6303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932895931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:31 Heat of formation + Delta-G solvation = -212.863167 kcal Electronic energy + Delta-G solvation = -32002.654073 eV Core-core repulsion = 27220.083019 eV Total energy + Delta-G solvation = -4782.571055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.34183 -45.99866 -45.60582 -40.17058 -38.66989 -36.65456 -34.71339 -33.27695 -32.50483 -31.99282 -30.03553 -28.13117 -27.34173 -25.11320 -24.53715 -23.12763 -21.74106 -21.44062 -20.66706 -19.31011 -18.26836 -16.95856 -16.91438 -16.68401 -16.60516 -16.06016 -15.60022 -15.31955 -14.98587 -14.76073 -14.69659 -14.12048 -14.02091 -13.45304 -13.31636 -13.04878 -12.93957 -12.92252 -12.68540 -12.52888 -12.41342 -12.38594 -12.35740 -12.25216 -12.00391 -11.90702 -11.80538 -11.36332 -11.17052 -11.13035 -10.99187 -10.87321 -10.80955 -10.75980 -10.47236 -10.37887 -9.82781 -9.66001 -9.50535 -8.72633 -8.48750 -8.09367 -6.23455 -4.47403 2.91657 3.19622 3.24559 3.26343 3.55309 3.71775 4.17173 4.37927 4.58975 4.70582 4.75373 4.78931 4.85863 4.92769 4.93558 5.01649 5.06805 5.16385 5.36940 5.44105 5.47929 5.64058 5.64526 5.68454 5.73325 5.76569 5.77474 5.84627 5.88247 5.89328 6.01291 6.01318 6.15148 6.20064 6.27716 6.62803 6.87135 7.18939 7.22048 7.35372 7.59793 7.64969 8.48330 8.58766 9.12579 9.23623 10.68268 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.003371 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.308241 B = 8303.600441 C = 8897.213432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 C -0.148 4.148 4 O -0.374 6.374 5 C 0.076 3.924 6 H 0.065 0.935 7 C -0.113 4.113 8 C -0.133 4.133 9 C 0.109 3.891 10 N -0.633 5.633 11 C 0.705 3.295 12 O -0.583 6.583 13 N -0.726 5.726 14 C 0.261 3.739 15 H 0.086 0.914 16 C -0.552 4.552 17 H 0.076 0.924 18 C 0.065 3.935 19 N -0.840 5.840 20 Si 0.915 3.085 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.416 3.584 25 F -0.210 7.210 26 F -0.137 7.137 27 F -0.219 7.219 28 C 0.110 3.890 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.393 0.607 43 H 0.269 0.731 44 H 0.067 0.933 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 13.298 6.309 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.022 3.978 3 C -0.205 4.205 4 O -0.292 6.292 5 C 0.018 3.982 6 H 0.083 0.917 7 C -0.151 4.151 8 C -0.171 4.171 9 C -0.014 4.014 10 N -0.373 5.373 11 C 0.406 3.594 12 O -0.460 6.460 13 N -0.380 5.380 14 C 0.155 3.845 15 H 0.104 0.896 16 C -0.589 4.589 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.473 5.473 20 Si 0.742 3.258 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.359 3.641 25 F -0.192 7.192 26 F -0.118 7.118 27 F -0.201 7.201 28 C -0.014 4.014 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.230 0.770 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.112 13.642 5.832 16.910 hybrid contribution 0.506 -1.211 -0.098 1.317 sum 8.618 12.431 5.734 16.177 Atomic orbital electron populations 1.22476 0.95706 1.03339 1.02393 1.22200 0.94025 0.93627 0.87984 1.21854 1.01542 0.94664 1.02430 1.87900 1.86129 1.19318 1.35892 1.22551 0.95198 0.80906 0.99593 0.91729 1.21560 0.97836 0.95461 1.00212 1.21921 0.97700 0.94575 1.02946 1.21688 0.85851 0.98048 0.95844 1.47243 1.32695 1.06943 1.50458 1.15944 0.82558 0.81681 0.79197 1.90893 1.28387 1.74580 1.52123 1.45425 1.37661 1.07257 1.47677 1.19613 0.92992 0.91527 0.80400 0.89598 1.20826 1.34717 0.88937 1.14443 0.90601 1.25073 0.94693 1.00371 0.94209 1.70388 1.27889 1.33977 1.15013 0.86273 0.78469 0.82444 0.78654 1.19787 1.20869 1.19835 1.23211 0.75432 0.71915 0.93507 1.92982 1.38316 1.90531 1.97380 1.93402 1.74764 1.71181 1.72456 1.93059 1.96170 1.38389 1.92446 1.21981 0.97767 0.78861 1.02826 0.91422 0.91855 0.91744 0.92122 0.92190 0.91337 0.91858 0.91188 0.90941 0.91118 0.90034 0.89868 0.91278 0.77036 0.92052 0.91466 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.32 37.16 0.35 -1.62 16 2 C 0.08 0.85 3.34 -26.73 -0.09 0.76 16 3 C -0.15 -1.26 9.56 37.16 0.36 -0.90 16 4 O -0.37 -4.52 9.66 -35.23 -0.34 -4.86 16 5 C 0.08 0.94 2.76 -26.61 -0.07 0.86 16 6 H 0.06 0.86 7.37 -51.93 -0.38 0.47 16 7 C -0.11 -1.14 5.53 -26.69 -0.15 -1.29 16 8 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 9 C 0.11 1.29 6.44 -3.56 -0.02 1.26 16 10 N -0.63 -9.97 2.98 -178.27 -0.53 -10.50 16 11 C 0.70 14.50 7.75 -86.91 -0.67 13.83 16 12 O -0.58 -14.20 14.60 5.29 0.08 -14.12 16 13 N -0.73 -15.12 4.90 -59.81 -0.29 -15.41 16 14 C 0.26 6.54 2.22 -69.08 -0.15 6.38 16 15 H 0.09 2.43 7.51 -51.92 -0.39 2.04 16 16 C -0.55 -14.06 8.46 -34.44 -0.29 -14.35 16 17 H 0.08 1.81 7.74 -52.49 -0.41 1.41 16 18 C 0.07 1.70 5.20 -17.82 -0.09 1.61 16 19 N -0.84 -23.01 9.51 55.43 0.53 -22.48 16 20 Si 0.92 19.99 29.54 -169.99 -5.02 14.97 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C 0.42 10.72 2.81 37.16 0.10 10.82 16 25 F -0.21 -5.18 16.94 2.25 0.04 -5.14 16 26 F -0.14 -3.80 12.91 2.25 0.03 -3.77 16 27 F -0.22 -5.61 15.88 2.25 0.04 -5.57 16 28 C 0.11 1.57 5.71 -3.71 -0.02 1.55 16 29 H 0.07 0.86 5.58 -51.93 -0.29 0.57 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.66 7.37 -51.93 -0.38 0.28 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.97 5.59 -51.93 -0.29 0.68 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.39 7.08 6.01 -40.82 -0.25 6.84 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 1.59 4.63 -51.93 -0.24 1.35 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -30.57 363.12 -7.34 -37.91 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.41 Total: 6.07 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: -0.92 Total: 17.45 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.30 Total: -48.40 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.26 Total: -18.98 kcal Atomic # 9 Polarization: -14.59 SS G_CDS: 0.10 Total: -14.49 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.57 -7.34 -37.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932895931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.951 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds