Wall clock time and date at job start Tue Mar 31 2020 21:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47006 * 2 1 4 4 O 1.42906 * 109.47151 * 119.99454 * 2 1 3 5 5 C 1.42901 * 113.99805 * 90.00041 * 4 2 1 6 6 H 1.09007 * 109.52401 * 30.08141 * 5 4 2 7 7 C 1.53035 * 109.49736 * 150.16365 * 5 4 2 8 8 C 1.53042 * 109.54116 * 181.31678 * 7 5 4 9 9 C 1.53191 * 109.31108 * 298.63616 * 8 7 5 10 10 N 1.47203 * 108.85481 * 54.64896 * 9 8 7 11 11 C 1.34780 * 120.81371 * 126.34097 * 10 9 8 12 12 O 1.21589 * 119.99926 * 175.10923 * 11 10 9 13 13 N 1.34779 * 120.00006 * 355.11283 * 11 10 9 14 14 C 1.46502 * 119.99811 * 185.12362 * 13 11 10 15 15 H 1.09007 * 109.47043 * 324.99429 * 14 13 11 16 16 C 1.50699 * 109.46968 * 204.99781 * 14 13 11 17 17 H 1.08000 * 120.00166 * 359.97438 * 16 14 13 18 18 C 1.37878 * 120.00168 * 179.97438 * 16 14 13 19 19 N 1.31512 * 119.99869 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 120.00130 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46781 * 60.00131 * 20 18 16 22 22 H 1.48500 * 109.46951 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46893 * 300.00131 * 20 18 16 24 24 C 1.53002 * 109.47325 * 84.99406 * 14 13 11 25 25 F 1.39903 * 109.46771 * 60.00298 * 24 14 13 26 26 F 1.39899 * 109.46971 * 179.97438 * 24 14 13 27 27 F 1.39897 * 109.47036 * 300.00251 * 24 14 13 28 28 C 1.46925 * 118.55651 * 306.47605 * 10 9 8 29 29 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47034 * 300.00043 * 1 2 3 31 31 H 1.08993 * 109.47101 * 60.00599 * 1 2 3 32 32 H 1.08996 * 109.47226 * 239.99224 * 2 1 3 33 33 H 1.09003 * 109.47093 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47006 * 299.99151 * 3 2 1 35 35 H 1.08996 * 109.47762 * 59.99552 * 3 2 1 36 36 H 1.08998 * 109.46153 * 301.33964 * 7 5 4 37 37 H 1.09004 * 109.46211 * 61.29509 * 7 5 4 38 38 H 1.09007 * 109.49484 * 58.58246 * 8 7 5 39 39 H 1.08992 * 109.49910 * 178.65067 * 8 7 5 40 40 H 1.09000 * 109.58682 * 174.41854 * 9 8 7 41 41 H 1.08993 * 109.58806 * 294.84472 * 9 8 7 42 42 H 0.96990 * 119.99975 * 5.11655 * 13 11 10 43 43 H 0.97001 * 120.00328 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.58733 * 293.68018 * 28 10 9 45 45 H 1.09006 * 109.58645 * 173.40109 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.2001 -2.0781 0.9888 6 1 2.4643 -2.2807 -0.0492 7 6 3.3271 -2.5586 1.9059 8 6 3.5576 -4.0564 1.6921 9 6 2.2808 -4.8220 2.0532 10 7 1.1585 -4.2677 1.2785 11 6 0.3783 -5.0674 0.5247 12 8 -0.5973 -4.6095 -0.0382 13 7 0.6796 -6.3746 0.3948 14 6 -0.1009 -7.2196 -0.5125 15 1 -1.1418 -6.8958 -0.5052 16 6 -0.0180 -8.6543 -0.0588 17 1 0.5588 -8.9111 0.8174 18 6 -0.6785 -9.6391 -0.7623 19 7 -1.3813 -9.3263 -1.8290 20 14 -0.5750 -11.4176 -0.2004 21 1 -1.1191 -11.5340 1.1765 22 1 -1.3673 -12.2738 -1.1192 23 1 0.8429 -11.8584 -0.2114 24 6 0.4605 -7.0998 -1.9307 25 9 1.7964 -7.5153 -1.9400 26 9 -0.2846 -7.9071 -2.7969 27 9 0.3835 -5.7679 -2.3518 28 6 0.9079 -2.8214 1.3419 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 4.2419 -2.0136 1.6732 37 1 3.0516 -2.3782 2.9450 38 1 3.8090 -4.2403 0.6475 39 1 4.3763 -4.3929 2.3281 40 1 2.4061 -5.8770 1.8094 41 1 2.0781 -4.7127 3.1185 42 1 1.4132 -6.7559 0.9019 43 1 -1.8457 -10.0191 -2.3242 44 1 0.5932 -2.5488 2.3493 45 1 0.1266 -2.5543 0.6303 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932895931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:30 Heat of formation + Delta-G solvation = -231.724404 kcal Electronic energy + Delta-G solvation = -32003.471958 eV Core-core repulsion = 27220.083019 eV Total energy + Delta-G solvation = -4783.388939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.43070 -48.06795 -47.73748 -41.51859 -39.84104 -37.81552 -36.55069 -34.65579 -34.03004 -33.00164 -31.25282 -29.82261 -28.13300 -26.63898 -26.25316 -24.15562 -23.45609 -22.32084 -22.01128 -20.83200 -19.66134 -18.91560 -18.78296 -18.62613 -17.92881 -17.55706 -17.05545 -16.61758 -16.60055 -16.14705 -15.85006 -15.35732 -15.14886 -15.01207 -14.92835 -14.58192 -14.47615 -14.38221 -14.30876 -14.18893 -14.02281 -13.91351 -13.86316 -13.65462 -13.28363 -13.12275 -13.03178 -12.78429 -12.75442 -12.60177 -12.26099 -12.22389 -11.99680 -11.88496 -11.67978 -11.58453 -11.42878 -11.20353 -10.78863 -10.67511 -10.18188 -9.49226 -8.20827 -6.52164 1.45797 1.49860 1.53248 1.59978 2.07065 2.36537 2.51263 2.61568 2.94146 2.98487 3.72625 3.78383 3.79026 3.87114 3.93782 3.95812 4.00675 4.12459 4.14499 4.17830 4.26983 4.47439 4.55691 4.64449 4.70594 4.73293 4.85465 4.89112 4.89966 4.92053 4.97878 5.04332 5.14478 5.26260 5.32669 5.33691 5.41551 5.45156 5.57026 5.64964 5.96777 6.26046 6.52580 7.01048 7.18290 7.57275 8.71982 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.003371 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.308241 B = 8303.600441 C = 8897.213432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.072 3.928 3 C -0.141 4.141 4 O -0.377 6.377 5 C 0.082 3.918 6 H 0.049 0.951 7 C -0.107 4.107 8 C -0.125 4.125 9 C 0.099 3.901 10 N -0.624 5.624 11 C 0.698 3.302 12 O -0.629 6.629 13 N -0.718 5.718 14 C 0.270 3.730 15 H 0.045 0.955 16 C -0.562 4.562 17 H 0.093 0.907 18 C 0.015 3.985 19 N -0.875 5.875 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.264 1.264 24 C 0.413 3.587 25 F -0.202 7.202 26 F -0.150 7.150 27 F -0.221 7.221 28 C 0.108 3.892 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.408 0.592 43 H 0.269 0.731 44 H 0.080 0.920 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.165 13.300 8.272 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.015 3.985 3 C -0.199 4.199 4 O -0.296 6.296 5 C 0.023 3.977 6 H 0.067 0.933 7 C -0.145 4.145 8 C -0.163 4.163 9 C -0.022 4.022 10 N -0.363 5.363 11 C 0.400 3.600 12 O -0.510 6.510 13 N -0.375 5.375 14 C 0.162 3.838 15 H 0.063 0.937 16 C -0.599 4.599 17 H 0.111 0.889 18 C -0.190 4.190 19 N -0.509 5.509 20 Si 0.808 3.192 21 H -0.187 1.187 22 H -0.211 1.211 23 H -0.188 1.188 24 C 0.357 3.643 25 F -0.184 7.184 26 F -0.131 7.131 27 F -0.203 7.203 28 C -0.016 4.016 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.247 0.753 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.394 13.676 7.849 18.886 hybrid contribution -0.195 -1.110 -0.707 1.331 sum 10.200 12.565 7.141 17.690 Atomic orbital electron populations 1.22454 0.96080 1.01857 1.03284 1.22366 0.93820 0.94933 0.87391 1.21829 1.01818 0.92889 1.03325 1.87898 1.86083 1.18995 1.36582 1.22484 0.94750 0.80990 0.99452 0.93274 1.21565 0.97253 0.95561 1.00095 1.21909 0.97424 0.94138 1.02873 1.22076 0.85265 0.98273 0.96612 1.47295 1.32674 1.07053 1.49316 1.16144 0.82617 0.81751 0.79511 1.90858 1.30646 1.75335 1.54189 1.45146 1.37741 1.07246 1.47327 1.19186 0.91497 0.92290 0.80869 0.93722 1.21180 1.34820 0.88948 1.14917 0.88940 1.26013 0.94085 1.04806 0.94111 1.70527 1.28818 1.35254 1.16302 0.85195 0.78762 0.76892 0.78387 1.18703 1.21055 1.18838 1.23350 0.75652 0.71615 0.93710 1.92981 1.37612 1.90443 1.97359 1.93375 1.75210 1.71593 1.72953 1.93051 1.96210 1.38542 1.92514 1.22091 0.98530 0.78224 1.02724 0.94026 0.91303 0.90528 0.92798 0.91691 0.89849 0.91568 0.89746 0.89760 0.92507 0.86562 0.89777 0.88711 0.75265 0.92134 0.90232 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 9.32 71.98 0.67 -3.26 16 2 C 0.07 1.52 3.34 30.59 0.10 1.62 16 3 C -0.14 -2.17 9.56 71.98 0.69 -1.49 16 4 O -0.38 -8.71 9.66 -148.98 -1.44 -10.15 16 5 C 0.08 1.94 2.76 30.67 0.08 2.03 16 6 H 0.05 1.31 7.37 -2.38 -0.02 1.29 16 7 C -0.11 -1.85 5.53 30.62 0.17 -1.68 16 8 C -0.13 -2.08 6.08 30.67 0.19 -1.90 16 9 C 0.10 2.11 6.44 86.31 0.56 2.66 16 10 N -0.62 -19.41 2.98 -836.19 -2.50 -21.91 16 11 C 0.70 29.36 7.75 179.05 1.39 30.75 16 12 O -0.63 -32.21 14.60 -4.00 -0.06 -32.27 16 13 N -0.72 -30.15 4.90 -461.39 -2.26 -32.42 16 14 C 0.27 13.82 2.22 44.25 0.10 13.92 16 15 H 0.05 2.67 7.51 -2.38 -0.02 2.65 16 16 C -0.56 -28.50 8.46 25.60 0.22 -28.28 16 17 H 0.09 4.27 7.74 -2.91 -0.02 4.25 16 18 C 0.02 0.79 5.20 84.66 0.44 1.23 16 19 N -0.88 -48.82 9.51 21.45 0.20 -48.61 16 20 Si 0.98 40.31 29.54 68.60 2.03 42.34 16 21 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.29 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 C 0.41 21.77 2.81 71.98 0.20 21.98 16 25 F -0.20 -9.94 16.94 44.97 0.76 -9.18 16 26 F -0.15 -8.57 12.91 44.97 0.58 -7.99 16 27 F -0.22 -11.71 15.88 44.97 0.71 -11.00 16 28 C 0.11 3.09 5.71 86.36 0.49 3.58 16 29 H 0.04 1.13 5.58 -2.39 -0.01 1.12 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.19 7.37 -2.39 -0.02 1.17 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.77 5.59 -2.39 -0.01 1.76 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.41 14.32 6.01 -92.72 -0.56 13.77 16 43 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.07 2.41 4.63 -2.38 -0.01 2.40 16 Total: -1.00 -67.92 363.12 3.79 -64.13 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.47 Total: 25.90 kcal Atomic # 6 Polarization: 35.86 SS G_CDS: 5.30 Total: 41.16 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -4.55 Total: -102.94 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.50 Total: -42.42 kcal Atomic # 9 Polarization: -30.23 SS G_CDS: 2.06 Total: -28.17 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -67.92 3.79 -64.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932895931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.593 kcal (2) G-P(sol) polarization free energy of solvation -67.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds