Wall clock time and date at job start Tue Mar 31 2020 21:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.48336 * 2 1 4 4 C 1.53090 * 109.48196 * 239.97604 * 2 1 3 5 5 C 1.53182 * 109.16408 * 182.41165 * 4 2 1 6 6 H 1.09001 * 109.53983 * 297.02309 * 5 4 2 7 7 C 1.52992 * 109.54564 * 176.84797 * 5 4 2 8 8 C 1.53004 * 109.47321 * 175.00140 * 7 5 4 9 9 N 1.46499 * 109.47198 * 179.97438 * 8 7 5 10 10 C 1.34777 * 120.00065 * 179.97438 * 9 8 7 11 11 O 1.21593 * 119.99923 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00128 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27942 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.50701 * 109.47114 * 154.72036 * 13 12 10 16 16 H 1.07995 * 120.00006 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00190 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99966 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00189 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47195 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47151 * 120.00429 * 19 17 15 22 22 H 1.48503 * 109.46944 * 240.00418 * 19 17 15 23 23 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 24 24 F 1.39901 * 109.47352 * 60.00121 * 23 13 12 25 25 F 1.39894 * 109.47202 * 180.02562 * 23 13 12 26 26 F 1.39903 * 109.47248 * 300.00283 * 23 13 12 27 27 C 1.53181 * 109.03567 * 56.97517 * 5 4 2 28 28 C 1.53090 * 109.16512 * 303.02072 * 27 5 4 29 29 O 1.42903 * 109.41427 * 57.61023 * 28 27 5 30 30 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47211 * 300.02673 * 1 2 3 32 32 H 1.09011 * 109.46895 * 60.02643 * 1 2 3 33 33 H 1.08993 * 109.52633 * 62.50233 * 4 2 1 34 34 H 1.09004 * 109.57205 * 302.34119 * 4 2 1 35 35 H 1.09000 * 109.47686 * 54.99563 * 7 5 4 36 36 H 1.09007 * 109.47129 * 294.99353 * 7 5 4 37 37 H 1.09000 * 109.47211 * 59.99132 * 8 7 5 38 38 H 1.09006 * 109.46815 * 299.99368 * 8 7 5 39 39 H 0.97000 * 120.00386 * 359.97438 * 9 8 7 40 40 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 41 41 H 0.96995 * 120.00431 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.52098 * 62.92959 * 27 5 4 43 43 H 1.09007 * 109.52158 * 183.11539 * 27 5 4 44 44 H 1.08995 * 109.48089 * 297.62428 * 28 27 5 45 45 H 1.08999 * 109.48852 * 177.59703 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5711 -0.7708 -1.2121 6 1 3.9690 0.2435 -1.2423 7 6 4.0878 -1.5592 -2.4172 8 6 5.6164 -1.5016 -2.4471 9 7 6.1112 -2.2570 -3.6006 10 6 7.4363 -2.3446 -3.8308 11 8 8.2211 -1.7970 -3.0807 12 7 7.8914 -3.0392 -4.8923 13 6 9.3320 -3.1395 -5.1389 14 1 9.8617 -3.1802 -4.1871 15 6 9.6206 -4.3905 -5.9282 16 1 8.8118 -5.0450 -6.2176 17 6 10.9171 -4.6988 -6.2819 18 7 11.9020 -3.9014 -5.9300 19 14 11.2747 -6.2490 -7.2609 20 1 10.0042 -6.9694 -7.5287 21 1 11.9183 -5.8839 -8.5484 22 1 12.1861 -7.1263 -6.4831 23 6 9.8001 -1.9172 -5.9312 24 9 9.5322 -0.7559 -5.1985 25 9 11.1756 -2.0133 -6.1673 26 9 9.1202 -1.8650 -7.1528 27 6 4.0176 -1.4601 0.0809 28 6 3.4306 -0.7094 1.2791 29 8 2.0065 -0.6742 1.1664 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3633 0.5135 -0.8903 33 1 1.7149 -0.1842 -2.1398 34 1 1.6443 -1.7374 -1.2721 35 1 3.6898 -1.1241 -3.3339 36 1 3.7649 -2.5974 -2.3377 37 1 6.0144 -1.9367 -1.5303 38 1 5.9393 -0.4635 -2.5266 39 1 5.4851 -2.6942 -4.1988 40 1 7.2653 -3.4764 -5.4904 41 1 12.8141 -4.1184 -6.1784 42 1 3.6612 -2.4901 0.0864 43 1 5.1059 -1.4498 0.1422 44 1 3.8192 0.3088 1.2959 45 1 3.7099 -1.2202 2.2006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932909887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:27 Heat of formation + Delta-G solvation = -235.856845 kcal Electronic energy + Delta-G solvation = -30298.404931 eV Core-core repulsion = 25514.836795 eV Total energy + Delta-G solvation = -4783.568135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.30381 -45.95615 -45.57417 -39.98794 -39.25430 -36.27371 -34.64545 -33.74052 -33.06856 -32.50735 -29.85501 -28.33411 -27.48520 -24.57399 -24.11574 -23.37295 -21.62684 -21.20568 -20.48922 -20.03547 -18.25695 -16.88055 -16.77606 -16.61966 -16.56358 -16.27135 -15.99227 -15.64320 -15.27427 -14.84803 -14.72182 -14.57562 -14.34526 -13.66910 -13.38081 -13.26415 -12.91835 -12.86575 -12.67224 -12.58737 -12.39386 -12.35042 -12.25321 -12.15575 -12.01423 -11.94076 -11.78415 -11.61371 -11.40671 -11.15869 -11.08200 -10.85648 -10.77255 -10.61625 -10.51828 -10.39070 -9.74672 -9.62868 -9.50411 -8.77970 -8.70210 -8.13941 -6.22780 -4.46412 3.16970 3.18600 3.26055 3.30194 3.48718 3.80998 4.19068 4.28829 4.39821 4.51609 4.60631 4.65213 4.82374 4.86285 4.94099 4.94943 5.01194 5.12733 5.17620 5.23621 5.31919 5.35571 5.48329 5.50812 5.59724 5.69535 5.70906 5.80191 5.85315 5.87682 5.91657 5.93821 6.06131 6.14186 6.25615 6.81572 6.86683 6.97022 7.23188 7.39114 7.63575 7.70673 8.50865 8.68285 9.16354 9.27468 10.68897 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.024403 B = 0.002178 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.130593 B =12854.739306 C =13144.544800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.057 0.943 4 C -0.144 4.144 5 C -0.086 4.086 6 H 0.075 0.925 7 C -0.124 4.124 8 C 0.140 3.860 9 N -0.755 5.755 10 C 0.698 3.302 11 O -0.585 6.585 12 N -0.727 5.727 13 C 0.262 3.738 14 H 0.085 0.915 15 C -0.551 4.551 16 H 0.077 0.923 17 C 0.064 3.936 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.416 3.584 24 F -0.217 7.217 25 F -0.138 7.138 26 F -0.211 7.211 27 C -0.156 4.156 28 C 0.061 3.939 29 O -0.383 6.383 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.392 0.608 40 H 0.394 0.606 41 H 0.267 0.733 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.162 4.959 8.095 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.075 0.925 4 C -0.181 4.181 5 C -0.105 4.105 6 H 0.094 0.906 7 C -0.162 4.162 8 C 0.015 3.985 9 N -0.412 5.412 10 C 0.397 3.603 11 O -0.462 6.462 12 N -0.380 5.380 13 C 0.156 3.844 14 H 0.102 0.898 15 C -0.588 4.588 16 H 0.095 0.905 17 C -0.145 4.145 18 N -0.473 5.473 19 Si 0.742 3.258 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.359 3.641 24 F -0.199 7.199 25 F -0.119 7.119 26 F -0.193 7.193 27 C -0.193 4.193 28 C -0.015 4.015 29 O -0.302 6.302 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.225 0.775 40 H 0.227 0.773 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.284 5.452 8.917 21.060 hybrid contribution 0.017 -0.761 -1.537 1.715 sum -18.267 4.691 7.380 20.252 Atomic orbital electron populations 1.21769 0.93213 1.02919 1.02346 1.22086 0.94931 0.95015 0.85236 0.92534 1.22278 0.95449 1.02074 0.98343 1.21128 0.95078 0.99883 0.94410 0.90640 1.21820 0.94875 1.01134 0.98377 1.21135 0.92439 0.96346 0.88545 1.45099 1.05828 1.58853 1.31399 1.16085 0.82108 0.79902 0.82175 1.90915 1.54964 1.51232 1.49117 1.45267 1.09239 1.55410 1.28072 1.19593 0.76602 0.90693 0.97541 0.89768 1.20915 0.93980 1.06015 1.37867 0.90474 1.25091 0.95899 0.97598 0.95903 1.70419 1.00254 1.33908 1.42689 0.86155 0.78580 0.81678 0.79368 1.19445 1.20585 1.20576 1.23181 0.77374 0.85236 0.78272 1.93071 1.94131 1.54895 1.77778 1.93399 1.28933 1.95114 1.94420 1.92981 1.80942 1.96916 1.48419 1.22342 1.01842 1.00536 0.94594 1.22575 0.80746 0.99677 0.98524 1.87921 1.21251 1.78017 1.43026 0.91820 0.91944 0.91120 0.90836 0.90891 0.91148 0.91152 0.91743 0.92003 0.77511 0.77287 0.92187 0.90847 0.90107 0.93196 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.56 37.15 0.36 -0.57 16 2 C 0.08 0.66 3.26 -26.69 -0.09 0.57 16 3 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.14 -1.04 4.71 -26.59 -0.13 -1.16 16 5 C -0.09 -0.69 2.27 -90.44 -0.21 -0.89 16 6 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 7 C -0.12 -1.06 4.80 -26.73 -0.13 -1.19 16 8 C 0.14 1.73 5.44 -4.04 -0.02 1.71 16 9 N -0.75 -10.93 5.56 -65.22 -0.36 -11.30 16 10 C 0.70 14.06 8.11 -86.92 -0.70 13.36 16 11 O -0.59 -14.25 14.93 5.28 0.08 -14.17 16 12 N -0.73 -15.02 4.99 -59.81 -0.30 -15.32 16 13 C 0.26 6.59 2.21 -69.08 -0.15 6.43 16 14 H 0.08 2.38 7.57 -51.93 -0.39 1.99 16 15 C -0.55 -14.07 8.47 -34.44 -0.29 -14.36 16 16 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 17 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 18 N -0.84 -23.12 9.50 55.43 0.53 -22.60 16 19 Si 0.92 20.10 29.54 -169.99 -5.02 15.08 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.42 10.83 2.81 37.16 0.10 10.93 16 24 F -0.22 -5.66 15.69 2.25 0.04 -5.62 16 25 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 26 F -0.21 -5.25 16.94 2.25 0.04 -5.22 16 27 C -0.16 -1.29 5.10 -26.59 -0.14 -1.43 16 28 C 0.06 0.50 6.84 37.20 0.25 0.76 16 29 O -0.38 -3.72 10.41 -35.23 -0.37 -4.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.85 6.66 -51.93 -0.35 0.51 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.39 4.45 8.49 -40.82 -0.35 4.10 16 40 H 0.39 6.93 8.55 -40.82 -0.35 6.58 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.70 6.75 -51.93 -0.35 0.35 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -31.77 370.48 -7.81 -39.58 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.82 Total: 6.16 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -1.23 Total: 15.73 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.13 Total: -49.21 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.29 Total: -18.26 kcal Atomic # 9 Polarization: -14.76 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.77 -7.81 -39.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932909887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.276 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds