Wall clock time and date at job start Tue Mar 31 2020 21:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.48336 * 2 1 4 4 C 1.53090 * 109.48196 * 239.97604 * 2 1 3 5 5 C 1.53182 * 109.16408 * 182.41165 * 4 2 1 6 6 H 1.09001 * 109.53983 * 297.02309 * 5 4 2 7 7 C 1.52992 * 109.54564 * 176.84797 * 5 4 2 8 8 C 1.53004 * 109.47321 * 175.00140 * 7 5 4 9 9 N 1.46499 * 109.47198 * 179.97438 * 8 7 5 10 10 C 1.34777 * 120.00065 * 179.97438 * 9 8 7 11 11 O 1.21593 * 119.99923 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00128 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27942 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.50701 * 109.47114 * 154.72036 * 13 12 10 16 16 H 1.07995 * 120.00006 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00190 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99966 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00189 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47195 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47151 * 120.00429 * 19 17 15 22 22 H 1.48503 * 109.46944 * 240.00418 * 19 17 15 23 23 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 24 24 F 1.39901 * 109.47352 * 60.00121 * 23 13 12 25 25 F 1.39894 * 109.47202 * 180.02562 * 23 13 12 26 26 F 1.39903 * 109.47248 * 300.00283 * 23 13 12 27 27 C 1.53181 * 109.03567 * 56.97517 * 5 4 2 28 28 C 1.53090 * 109.16512 * 303.02072 * 27 5 4 29 29 O 1.42903 * 109.41427 * 57.61023 * 28 27 5 30 30 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47211 * 300.02673 * 1 2 3 32 32 H 1.09011 * 109.46895 * 60.02643 * 1 2 3 33 33 H 1.08993 * 109.52633 * 62.50233 * 4 2 1 34 34 H 1.09004 * 109.57205 * 302.34119 * 4 2 1 35 35 H 1.09000 * 109.47686 * 54.99563 * 7 5 4 36 36 H 1.09007 * 109.47129 * 294.99353 * 7 5 4 37 37 H 1.09000 * 109.47211 * 59.99132 * 8 7 5 38 38 H 1.09006 * 109.46815 * 299.99368 * 8 7 5 39 39 H 0.97000 * 120.00386 * 359.97438 * 9 8 7 40 40 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 41 41 H 0.96995 * 120.00431 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.52098 * 62.92959 * 27 5 4 43 43 H 1.09007 * 109.52158 * 183.11539 * 27 5 4 44 44 H 1.08995 * 109.48089 * 297.62428 * 28 27 5 45 45 H 1.08999 * 109.48852 * 177.59703 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5711 -0.7708 -1.2121 6 1 3.9690 0.2435 -1.2423 7 6 4.0878 -1.5592 -2.4172 8 6 5.6164 -1.5016 -2.4471 9 7 6.1112 -2.2570 -3.6006 10 6 7.4363 -2.3446 -3.8308 11 8 8.2211 -1.7970 -3.0807 12 7 7.8914 -3.0392 -4.8923 13 6 9.3320 -3.1395 -5.1389 14 1 9.8617 -3.1802 -4.1871 15 6 9.6206 -4.3905 -5.9282 16 1 8.8118 -5.0450 -6.2176 17 6 10.9171 -4.6988 -6.2819 18 7 11.9020 -3.9014 -5.9300 19 14 11.2747 -6.2490 -7.2609 20 1 10.0042 -6.9694 -7.5287 21 1 11.9183 -5.8839 -8.5484 22 1 12.1861 -7.1263 -6.4831 23 6 9.8001 -1.9172 -5.9312 24 9 9.5322 -0.7559 -5.1985 25 9 11.1756 -2.0133 -6.1673 26 9 9.1202 -1.8650 -7.1528 27 6 4.0176 -1.4601 0.0809 28 6 3.4306 -0.7094 1.2791 29 8 2.0065 -0.6742 1.1664 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8897 32 1 -0.3633 0.5135 -0.8903 33 1 1.7149 -0.1842 -2.1398 34 1 1.6443 -1.7374 -1.2721 35 1 3.6898 -1.1241 -3.3339 36 1 3.7649 -2.5974 -2.3377 37 1 6.0144 -1.9367 -1.5303 38 1 5.9393 -0.4635 -2.5266 39 1 5.4851 -2.6942 -4.1988 40 1 7.2653 -3.4764 -5.4904 41 1 12.8141 -4.1184 -6.1784 42 1 3.6612 -2.4901 0.0864 43 1 5.1059 -1.4498 0.1422 44 1 3.8192 0.3088 1.2959 45 1 3.7099 -1.2202 2.2006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932909887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:26 Heat of formation + Delta-G solvation = -257.187936 kcal Electronic energy + Delta-G solvation = -30299.329916 eV Core-core repulsion = 25514.836795 eV Total energy + Delta-G solvation = -4784.493121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.39806 -48.03170 -47.71122 -41.00721 -40.46817 -37.31620 -36.35917 -34.96458 -34.36159 -33.64935 -31.04961 -29.66113 -28.38259 -26.57747 -25.04974 -24.12064 -23.34910 -22.02434 -21.83437 -21.01386 -19.89877 -18.86310 -18.75483 -18.54195 -17.85677 -17.26102 -17.05018 -16.79611 -16.57640 -16.37043 -15.84260 -15.55391 -15.35139 -15.05320 -14.97909 -14.82560 -14.52584 -14.44032 -14.34367 -14.28203 -14.01306 -13.86875 -13.54577 -13.23168 -13.16182 -13.03860 -12.86914 -12.74794 -12.70088 -12.64276 -12.35038 -12.19548 -12.00066 -11.76379 -11.54323 -11.33361 -11.27521 -11.11700 -10.69201 -10.36730 -10.28796 -9.74732 -8.20459 -6.51168 1.46726 1.47748 1.60354 1.76136 2.15299 2.37681 2.57686 2.89324 2.95308 3.31709 3.65035 3.76004 3.80514 3.88525 3.91040 4.04549 4.17269 4.21737 4.24834 4.34622 4.39807 4.53119 4.60109 4.66037 4.75843 4.83707 4.86112 4.89478 4.94879 5.03562 5.06870 5.15228 5.18946 5.27485 5.34725 5.44697 5.47871 5.52872 5.58241 5.66556 6.15810 6.35500 6.54526 7.17378 7.22774 7.67147 8.72608 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.024403 B = 0.002178 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.130593 B =12854.739306 C =13144.544800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.059 0.941 4 C -0.137 4.137 5 C -0.085 4.085 6 H 0.074 0.926 7 C -0.109 4.109 8 C 0.138 3.862 9 N -0.731 5.731 10 C 0.692 3.308 11 O -0.631 6.631 12 N -0.721 5.721 13 C 0.270 3.730 14 H 0.045 0.955 15 C -0.559 4.559 16 H 0.093 0.907 17 C 0.013 3.987 18 N -0.875 5.875 19 Si 0.985 3.015 20 H -0.254 1.254 21 H -0.281 1.281 22 H -0.278 1.278 23 C 0.413 3.587 24 F -0.220 7.220 25 F -0.151 7.151 26 F -0.203 7.203 27 C -0.154 4.154 28 C 0.059 3.941 29 O -0.402 6.402 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.411 0.589 40 H 0.410 0.590 41 H 0.268 0.732 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.326 4.063 7.109 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.020 3.980 3 H 0.077 0.923 4 C -0.175 4.175 5 C -0.104 4.104 6 H 0.092 0.908 7 C -0.147 4.147 8 C 0.014 3.986 9 N -0.389 5.389 10 C 0.392 3.608 11 O -0.512 6.512 12 N -0.375 5.375 13 C 0.162 3.838 14 H 0.063 0.937 15 C -0.596 4.596 16 H 0.111 0.889 17 C -0.192 4.192 18 N -0.509 5.509 19 Si 0.808 3.192 20 H -0.178 1.178 21 H -0.207 1.207 22 H -0.204 1.204 23 C 0.356 3.644 24 F -0.202 7.202 25 F -0.132 7.132 26 F -0.185 7.185 27 C -0.192 4.192 28 C -0.017 4.017 29 O -0.322 6.322 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.248 0.752 40 H 0.247 0.753 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.541 4.546 7.921 22.480 hybrid contribution 0.652 -0.411 -1.171 1.402 sum -19.889 4.135 6.750 21.407 Atomic orbital electron populations 1.21781 0.92212 1.02928 1.03114 1.22269 0.95801 0.95043 0.84890 0.92322 1.22228 0.94392 1.02186 0.98691 1.21118 0.95866 0.99597 0.93782 0.90779 1.21727 0.91550 1.02094 0.99351 1.21296 0.95066 0.95065 0.87170 1.44939 1.03945 1.58043 1.31937 1.16309 0.83546 0.79417 0.81506 1.90884 1.56737 1.53037 1.50550 1.44994 1.07839 1.55872 1.28801 1.19167 0.78621 0.90490 0.95513 0.93749 1.21251 0.94594 1.06155 1.37557 0.88893 1.26028 0.95740 1.00649 0.96826 1.70548 1.00650 1.35852 1.43898 0.85088 0.78843 0.77757 0.77477 1.17777 1.20725 1.20386 1.23358 0.76895 0.85502 0.78638 1.93061 1.94086 1.55117 1.77892 1.93372 1.30118 1.95205 1.94539 1.92980 1.80664 1.96906 1.47949 1.22308 1.01309 1.00464 0.95078 1.22632 0.80370 0.99968 0.98766 1.87901 1.21797 1.78388 1.44079 0.92155 0.92186 0.89390 0.89308 0.91000 0.89641 0.90112 0.92718 0.93315 0.75233 0.75329 0.92186 0.91135 0.90883 0.92851 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.56 71.98 0.69 -0.89 16 2 C 0.08 1.08 3.26 30.62 0.10 1.18 16 3 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.14 -1.66 4.71 30.69 0.14 -1.52 16 5 C -0.08 -1.20 2.27 -10.67 -0.02 -1.23 16 6 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 7 C -0.11 -1.61 4.80 30.59 0.15 -1.47 16 8 C 0.14 3.26 5.44 86.38 0.47 3.73 16 9 N -0.73 -20.08 5.56 -478.52 -2.66 -22.75 16 10 C 0.69 27.71 8.11 179.05 1.45 29.16 16 11 O -0.63 -31.39 14.93 -4.01 -0.06 -31.45 16 12 N -0.72 -29.32 4.99 -461.41 -2.30 -31.62 16 13 C 0.27 13.70 2.21 44.24 0.10 13.80 16 14 H 0.04 2.62 7.57 -2.39 -0.02 2.60 16 15 C -0.56 -28.17 8.47 25.60 0.22 -27.95 16 16 H 0.09 4.29 7.74 -2.91 -0.02 4.27 16 17 C 0.01 0.65 5.20 84.65 0.44 1.09 16 18 N -0.88 -48.78 9.50 21.45 0.20 -48.57 16 19 Si 0.98 40.41 29.54 68.60 2.03 42.44 16 20 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 23 C 0.41 21.68 2.81 71.98 0.20 21.89 16 24 F -0.22 -11.62 15.69 44.97 0.71 -10.92 16 25 F -0.15 -8.63 12.91 44.97 0.58 -8.05 16 26 F -0.20 -10.00 16.94 44.97 0.76 -9.24 16 27 C -0.15 -2.44 5.10 30.68 0.16 -2.28 16 28 C 0.06 0.93 6.84 72.01 0.49 1.43 16 29 O -0.40 -7.43 10.41 -148.98 -1.55 -8.98 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.05 1.43 6.66 -2.39 -0.02 1.41 16 38 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.41 8.21 8.49 -92.71 -0.79 7.43 16 40 H 0.41 13.70 8.55 -92.71 -0.79 12.90 16 41 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.26 6.75 -2.38 -0.02 1.24 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -68.93 370.48 1.73 -67.19 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.55 Total: 24.99 kcal Atomic # 6 Polarization: 32.36 SS G_CDS: 4.58 Total: 36.95 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -4.76 Total: -102.94 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.61 Total: -40.43 kcal Atomic # 9 Polarization: -30.25 SS G_CDS: 2.05 Total: -28.20 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -68.93 1.73 -67.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932909887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.996 kcal (2) G-P(sol) polarization free energy of solvation -68.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds