Wall clock time and date at job start Tue Mar 31 2020 21:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47798 * 2 1 4 4 C 1.53094 * 109.47905 * 239.98380 * 2 1 3 5 5 C 1.53183 * 109.16171 * 297.62015 * 4 2 1 6 6 H 1.08994 * 109.53863 * 62.89089 * 5 4 2 7 7 C 1.52993 * 109.54083 * 183.15595 * 5 4 2 8 8 C 1.53008 * 109.46958 * 184.55936 * 7 5 4 9 9 N 1.46501 * 109.47191 * 180.02562 * 8 7 5 10 10 C 1.34776 * 119.99987 * 179.97438 * 9 8 7 11 11 O 1.21584 * 119.99706 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99688 * 179.97438 * 10 9 8 13 13 C 1.46508 * 119.99673 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47029 * 324.99919 * 13 12 10 15 15 C 1.50693 * 109.47038 * 204.99841 * 13 12 10 16 16 H 1.08001 * 120.00201 * 274.94424 * 15 13 12 17 17 C 1.37874 * 120.00173 * 94.94525 * 15 13 12 18 18 N 1.31511 * 120.00487 * 184.87865 * 17 15 13 19 19 Si 1.86807 * 119.99713 * 4.87508 * 17 15 13 20 20 H 1.48490 * 109.46904 * 84.81337 * 19 17 15 21 21 H 1.48499 * 109.46942 * 204.81379 * 19 17 15 22 22 H 1.48497 * 109.46905 * 324.80833 * 19 17 15 23 23 C 1.53005 * 109.46757 * 84.99863 * 13 12 10 24 24 F 1.39894 * 109.47247 * 54.93989 * 23 13 12 25 25 F 1.39903 * 109.46587 * 174.93902 * 23 13 12 26 26 F 1.39896 * 109.47248 * 294.93223 * 23 13 12 27 27 C 1.53172 * 109.03587 * 303.02117 * 5 4 2 28 28 C 1.53093 * 109.16406 * 56.98398 * 27 5 4 29 29 O 1.42898 * 109.48346 * 120.03782 * 2 1 3 30 30 H 1.08998 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47072 * 300.01951 * 1 2 3 32 32 H 1.08998 * 109.47562 * 60.01916 * 1 2 3 33 33 H 1.09004 * 109.51969 * 177.71977 * 4 2 1 34 34 H 1.08994 * 109.52577 * 57.52668 * 4 2 1 35 35 H 1.09001 * 109.47445 * 304.55666 * 7 5 4 36 36 H 1.08999 * 109.47647 * 64.55911 * 7 5 4 37 37 H 1.09000 * 109.46379 * 299.99814 * 8 7 5 38 38 H 1.08999 * 109.46962 * 59.99556 * 8 7 5 39 39 H 0.97007 * 119.99462 * 359.97438 * 9 8 7 40 40 H 0.96996 * 120.00476 * 359.97438 * 12 10 9 41 41 H 0.96997 * 120.00569 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.52012 * 176.88240 * 27 5 4 43 43 H 1.08993 * 109.52652 * 297.07651 * 27 5 4 44 44 H 1.08997 * 109.48508 * 62.36962 * 28 27 5 45 45 H 1.08998 * 109.48109 * 182.40774 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7220 -1.2497 5 6 1.5757 -2.1812 -1.2125 6 1 0.4868 -2.2177 -1.2412 7 6 2.1468 -2.9310 -2.4177 8 6 1.5909 -4.3563 -2.4417 9 7 2.1382 -5.0746 -3.5953 10 6 1.7864 -6.3561 -3.8201 11 8 1.0152 -6.9161 -3.0652 12 7 2.2895 -7.0166 -4.8817 13 6 1.9075 -8.4098 -5.1257 14 1 1.7775 -8.9231 -4.1730 15 6 2.9880 -9.0947 -5.9220 16 1 2.9962 -9.0177 -6.9993 17 6 3.9663 -9.8199 -5.2755 18 7 4.9625 -10.3373 -5.9606 19 14 3.8767 -10.0675 -3.4261 20 1 3.0076 -11.2330 -3.1243 21 1 5.2404 -10.3158 -2.8933 22 1 3.3111 -8.8504 -2.7906 23 6 0.5940 -8.4486 -5.9094 24 9 0.7261 -7.6923 -7.0788 25 9 0.2887 -9.7727 -6.2424 26 9 -0.4339 -7.9167 -5.1235 27 6 2.0766 -2.8322 0.0803 28 6 1.5646 -2.0287 1.2787 29 8 2.0066 -0.6743 1.1662 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5141 0.8898 32 1 -0.3634 0.5135 -0.8901 33 1 3.1298 -0.6871 -1.2711 34 1 1.6420 -0.2354 -2.1399 35 1 1.8628 -2.4148 -3.3347 36 1 3.2336 -2.9661 -2.3422 37 1 1.8750 -4.8724 -1.5246 38 1 0.5041 -4.3212 -2.5171 39 1 2.7537 -4.6277 -4.1973 40 1 2.9044 -6.5697 -5.4841 41 1 5.6506 -10.8477 -5.5058 42 1 1.7038 -3.8547 0.1414 43 1 3.1664 -2.8399 0.0859 44 1 0.4751 -2.0552 1.2955 45 1 1.9532 -2.4625 2.2000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932909889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:29 Heat of formation + Delta-G solvation = -256.262243 kcal Electronic energy + Delta-G solvation = -30548.429676 eV Core-core repulsion = 25763.976696 eV Total energy + Delta-G solvation = -4784.452980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.01265 -46.53460 -46.49535 -40.24643 -39.31647 -36.29731 -34.76655 -33.77506 -32.62268 -32.45508 -30.12205 -28.85019 -27.71641 -24.93253 -24.14925 -23.78461 -21.66595 -21.30040 -20.25432 -19.55454 -18.54593 -17.54411 -17.32744 -16.84247 -16.67903 -16.44711 -16.27113 -15.77648 -15.58445 -14.88900 -14.77230 -14.50826 -14.23817 -13.77011 -13.67489 -13.45259 -13.39864 -13.08950 -13.02305 -12.96693 -12.71271 -12.70935 -12.64829 -12.57579 -12.37515 -12.06778 -11.97039 -11.85384 -11.55545 -11.50880 -11.15739 -11.08509 -10.69354 -10.60357 -10.30482 -10.13515 -9.80467 -9.77030 -9.60996 -8.98613 -8.79665 -8.24728 -6.54084 -4.69134 3.05918 3.19444 3.22611 3.32252 3.56865 3.67942 4.02747 4.11030 4.31343 4.39526 4.43210 4.61755 4.68036 4.73205 4.93097 4.95728 5.01186 5.12934 5.14095 5.20425 5.21410 5.22869 5.29028 5.34133 5.48084 5.52414 5.56735 5.60323 5.64593 5.74480 5.80636 5.87213 5.93695 6.05324 6.15202 6.30370 6.81051 6.89670 6.94560 7.22720 7.47012 7.92250 8.51539 8.66711 9.02308 9.20093 10.54191 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016713 B = 0.002680 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.942581 B =10444.803798 C =11275.754991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.086 3.914 3 H 0.100 0.900 4 C -0.144 4.144 5 C -0.086 4.086 6 H 0.077 0.923 7 C -0.125 4.125 8 C 0.139 3.861 9 N -0.755 5.755 10 C 0.691 3.309 11 O -0.594 6.594 12 N -0.728 5.728 13 C 0.221 3.779 14 H 0.089 0.911 15 C -0.535 4.535 16 H 0.093 0.907 17 C 0.100 3.900 18 N -0.860 5.860 19 Si 0.868 3.132 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.253 1.253 23 C 0.436 3.564 24 F -0.194 7.194 25 F -0.183 7.183 26 F -0.195 7.195 27 C -0.155 4.155 28 C 0.056 3.944 29 O -0.379 6.379 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.393 0.607 40 H 0.396 0.604 41 H 0.275 0.725 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 18.607 9.170 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.028 3.972 3 H 0.118 0.882 4 C -0.181 4.181 5 C -0.105 4.105 6 H 0.095 0.905 7 C -0.163 4.163 8 C 0.014 3.986 9 N -0.412 5.412 10 C 0.391 3.609 11 O -0.472 6.472 12 N -0.383 5.383 13 C 0.117 3.883 14 H 0.106 0.894 15 C -0.573 4.573 16 H 0.111 0.889 17 C -0.110 4.110 18 N -0.492 5.492 19 Si 0.693 3.307 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.177 1.177 23 C 0.380 3.620 24 F -0.175 7.175 25 F -0.164 7.164 26 F -0.177 7.177 27 C -0.193 4.193 28 C -0.020 4.020 29 O -0.298 6.298 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.226 0.774 40 H 0.231 0.769 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.020 18.034 9.988 21.217 hybrid contribution 0.238 0.064 -0.094 0.263 sum -4.783 18.097 9.894 21.173 Atomic orbital electron populations 1.22471 0.96441 1.02976 1.02648 1.22160 0.93460 0.96298 0.85276 0.88239 1.22240 1.01951 0.95607 0.98352 1.21140 1.00710 0.94268 0.94341 0.90454 1.21831 1.01189 0.94858 0.98417 1.21135 0.98172 0.90592 0.88661 1.45207 1.52407 1.12400 1.31137 1.16436 0.80933 0.80917 0.82588 1.90874 1.39484 1.67708 1.49146 1.46715 1.49519 1.14338 1.27755 1.19859 0.89202 0.81925 0.97313 0.89374 1.20748 1.09249 1.31792 0.95517 0.88910 1.24999 0.93862 0.93219 0.98913 1.69857 1.10531 1.31735 1.37123 0.86922 0.78219 0.80688 0.84849 1.19030 1.20627 1.17652 1.21808 0.88650 0.72882 0.78685 1.93056 1.96182 1.76752 1.51550 1.93103 1.94106 1.36238 1.92986 1.93143 1.63506 1.86585 1.74422 1.22333 1.02176 1.00133 0.94653 1.22600 0.98837 0.82115 0.98457 1.87982 1.73745 1.24929 1.43186 0.91641 0.91963 0.91457 0.90917 0.90792 0.91135 0.91139 0.91885 0.92081 0.77377 0.76874 0.91449 0.90245 0.90873 0.92839 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 8.65 37.16 0.32 -0.93 16 2 C 0.09 0.65 3.91 -26.68 -0.10 0.54 16 3 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.14 -1.03 4.93 -26.59 -0.13 -1.16 16 5 C -0.09 -0.69 1.97 -90.44 -0.18 -0.86 16 6 H 0.08 0.62 6.62 -51.93 -0.34 0.28 16 7 C -0.13 -1.10 4.81 -26.73 -0.13 -1.23 16 8 C 0.14 1.74 5.43 -4.04 -0.02 1.72 16 9 N -0.75 -11.12 5.56 -65.22 -0.36 -11.48 16 10 C 0.69 13.79 8.22 -86.92 -0.71 13.08 16 11 O -0.59 -14.02 14.91 5.29 0.08 -13.94 16 12 N -0.73 -14.84 4.91 -59.81 -0.29 -15.13 16 13 C 0.22 5.18 1.71 -69.08 -0.12 5.06 16 14 H 0.09 2.21 4.73 -51.93 -0.25 1.97 16 15 C -0.54 -13.72 8.52 -34.44 -0.29 -14.01 16 16 H 0.09 2.56 8.00 -52.49 -0.42 2.14 16 17 C 0.10 2.62 5.47 -17.82 -0.10 2.53 16 18 N -0.86 -23.59 13.96 55.43 0.77 -22.82 16 19 Si 0.87 20.32 26.99 -169.99 -4.59 15.73 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.25 -6.07 6.82 56.52 0.39 -5.68 16 23 C 0.44 9.93 2.83 37.16 0.11 10.03 16 24 F -0.19 -4.22 16.93 2.25 0.04 -4.19 16 25 F -0.18 -4.23 16.89 2.25 0.04 -4.19 16 26 F -0.19 -4.45 15.83 2.25 0.04 -4.41 16 27 C -0.16 -1.33 5.09 -26.59 -0.14 -1.46 16 28 C 0.06 0.47 6.52 37.21 0.24 0.71 16 29 O -0.38 -3.68 10.60 -35.23 -0.37 -4.05 16 30 H 0.06 0.46 4.97 -51.93 -0.26 0.20 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.86 6.64 -51.93 -0.35 0.51 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.39 4.63 8.49 -40.82 -0.35 4.29 16 40 H 0.40 7.15 8.61 -40.82 -0.35 6.80 16 41 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.08 0.71 6.74 -51.93 -0.35 0.36 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.41 6.34 -51.93 -0.33 0.08 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -30.75 366.54 -6.75 -37.50 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.37 Total: 7.42 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -1.25 Total: 14.02 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.12 Total: -49.43 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.29 Total: -17.99 kcal Atomic # 9 Polarization: -12.90 SS G_CDS: 0.11 Total: -12.79 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.59 Total: 15.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.75 -6.75 -37.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932909889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.757 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds