Wall clock time and date at job start Tue Mar 31 2020 21:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47798 * 2 1 4 4 C 1.53094 * 109.47905 * 239.98380 * 2 1 3 5 5 C 1.53183 * 109.16171 * 297.62015 * 4 2 1 6 6 H 1.08994 * 109.53863 * 62.89089 * 5 4 2 7 7 C 1.52993 * 109.54083 * 183.15595 * 5 4 2 8 8 C 1.53008 * 109.46958 * 184.55936 * 7 5 4 9 9 N 1.46501 * 109.47191 * 180.02562 * 8 7 5 10 10 C 1.34776 * 119.99987 * 179.97438 * 9 8 7 11 11 O 1.21584 * 119.99706 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99688 * 179.97438 * 10 9 8 13 13 C 1.46508 * 119.99673 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47029 * 324.99919 * 13 12 10 15 15 C 1.50693 * 109.47038 * 204.99841 * 13 12 10 16 16 H 1.08001 * 120.00201 * 274.94424 * 15 13 12 17 17 C 1.37874 * 120.00173 * 94.94525 * 15 13 12 18 18 N 1.31511 * 120.00487 * 184.87865 * 17 15 13 19 19 Si 1.86807 * 119.99713 * 4.87508 * 17 15 13 20 20 H 1.48490 * 109.46904 * 84.81337 * 19 17 15 21 21 H 1.48499 * 109.46942 * 204.81379 * 19 17 15 22 22 H 1.48497 * 109.46905 * 324.80833 * 19 17 15 23 23 C 1.53005 * 109.46757 * 84.99863 * 13 12 10 24 24 F 1.39894 * 109.47247 * 54.93989 * 23 13 12 25 25 F 1.39903 * 109.46587 * 174.93902 * 23 13 12 26 26 F 1.39896 * 109.47248 * 294.93223 * 23 13 12 27 27 C 1.53172 * 109.03587 * 303.02117 * 5 4 2 28 28 C 1.53093 * 109.16406 * 56.98398 * 27 5 4 29 29 O 1.42898 * 109.48346 * 120.03782 * 2 1 3 30 30 H 1.08998 * 109.46932 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47072 * 300.01951 * 1 2 3 32 32 H 1.08998 * 109.47562 * 60.01916 * 1 2 3 33 33 H 1.09004 * 109.51969 * 177.71977 * 4 2 1 34 34 H 1.08994 * 109.52577 * 57.52668 * 4 2 1 35 35 H 1.09001 * 109.47445 * 304.55666 * 7 5 4 36 36 H 1.08999 * 109.47647 * 64.55911 * 7 5 4 37 37 H 1.09000 * 109.46379 * 299.99814 * 8 7 5 38 38 H 1.08999 * 109.46962 * 59.99556 * 8 7 5 39 39 H 0.97007 * 119.99462 * 359.97438 * 9 8 7 40 40 H 0.96996 * 120.00476 * 359.97438 * 12 10 9 41 41 H 0.96997 * 120.00569 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.52012 * 176.88240 * 27 5 4 43 43 H 1.08993 * 109.52652 * 297.07651 * 27 5 4 44 44 H 1.08997 * 109.48508 * 62.36962 * 28 27 5 45 45 H 1.08998 * 109.48109 * 182.40774 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7220 -1.2497 5 6 1.5757 -2.1812 -1.2125 6 1 0.4868 -2.2177 -1.2412 7 6 2.1468 -2.9310 -2.4177 8 6 1.5909 -4.3563 -2.4417 9 7 2.1382 -5.0746 -3.5953 10 6 1.7864 -6.3561 -3.8201 11 8 1.0152 -6.9161 -3.0652 12 7 2.2895 -7.0166 -4.8817 13 6 1.9075 -8.4098 -5.1257 14 1 1.7775 -8.9231 -4.1730 15 6 2.9880 -9.0947 -5.9220 16 1 2.9962 -9.0177 -6.9993 17 6 3.9663 -9.8199 -5.2755 18 7 4.9625 -10.3373 -5.9606 19 14 3.8767 -10.0675 -3.4261 20 1 3.0076 -11.2330 -3.1243 21 1 5.2404 -10.3158 -2.8933 22 1 3.3111 -8.8504 -2.7906 23 6 0.5940 -8.4486 -5.9094 24 9 0.7261 -7.6923 -7.0788 25 9 0.2887 -9.7727 -6.2424 26 9 -0.4339 -7.9167 -5.1235 27 6 2.0766 -2.8322 0.0803 28 6 1.5646 -2.0287 1.2787 29 8 2.0066 -0.6743 1.1662 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5141 0.8898 32 1 -0.3634 0.5135 -0.8901 33 1 3.1298 -0.6871 -1.2711 34 1 1.6420 -0.2354 -2.1399 35 1 1.8628 -2.4148 -3.3347 36 1 3.2336 -2.9661 -2.3422 37 1 1.8750 -4.8724 -1.5246 38 1 0.5041 -4.3212 -2.5171 39 1 2.7537 -4.6277 -4.1973 40 1 2.9044 -6.5697 -5.4841 41 1 5.6506 -10.8477 -5.5058 42 1 1.7038 -3.8547 0.1414 43 1 3.1664 -2.8399 0.0859 44 1 0.4751 -2.0552 1.2955 45 1 1.9532 -2.4625 2.2000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932909889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:29 Heat of formation + Delta-G solvation = -277.256985 kcal Electronic energy + Delta-G solvation = -30549.340076 eV Core-core repulsion = 25763.976696 eV Total energy + Delta-G solvation = -4785.363380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.85408 -48.35966 -48.34715 -41.08304 -40.68166 -37.36490 -36.41531 -34.96098 -34.44102 -33.15911 -31.40271 -30.04772 -28.54812 -26.87939 -25.06318 -24.42763 -23.21471 -22.27900 -21.84907 -20.35958 -20.13482 -19.35291 -18.99468 -18.57922 -18.36743 -17.53834 -17.14056 -16.90104 -16.62985 -16.15497 -15.86432 -15.64226 -15.38060 -15.26235 -15.21315 -14.91333 -14.87352 -14.80441 -14.55209 -14.50931 -14.48299 -14.38257 -13.82910 -13.65651 -13.37135 -13.08393 -13.02461 -12.79926 -12.63048 -12.59038 -12.33439 -12.10653 -11.99220 -11.83488 -11.77893 -11.37101 -11.29116 -10.99497 -10.90300 -10.37145 -10.31604 -9.76580 -8.56070 -6.74348 1.24969 1.32183 1.43281 1.68916 1.96084 2.16762 2.30575 2.83428 2.97521 3.16799 3.36959 3.40930 3.66502 3.73806 3.78505 3.89141 4.01814 4.14070 4.24665 4.32836 4.39649 4.45123 4.51747 4.55517 4.58782 4.67543 4.81134 4.91662 4.94035 4.95320 5.00624 5.09220 5.13034 5.22024 5.26971 5.32171 5.50538 5.51618 5.58570 5.83570 6.16177 6.33903 6.43322 6.99400 7.19499 7.64483 8.56192 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016713 B = 0.002680 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.942581 B =10444.803798 C =11275.754991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.079 3.921 3 H 0.109 0.891 4 C -0.138 4.138 5 C -0.083 4.083 6 H 0.079 0.921 7 C -0.112 4.112 8 C 0.138 3.862 9 N -0.735 5.735 10 C 0.687 3.313 11 O -0.631 6.631 12 N -0.726 5.726 13 C 0.229 3.771 14 H 0.075 0.925 15 C -0.535 4.535 16 H 0.067 0.933 17 C 0.065 3.935 18 N -0.896 5.896 19 Si 0.921 3.079 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.262 1.262 23 C 0.438 3.562 24 F -0.187 7.187 25 F -0.186 7.186 26 F -0.193 7.193 27 C -0.154 4.154 28 C 0.055 3.945 29 O -0.399 6.399 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.410 0.590 40 H 0.409 0.591 41 H 0.281 0.719 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 20.399 9.702 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.022 3.978 3 H 0.127 0.873 4 C -0.176 4.176 5 C -0.102 4.102 6 H 0.097 0.903 7 C -0.150 4.150 8 C 0.014 3.986 9 N -0.392 5.392 10 C 0.387 3.613 11 O -0.512 6.512 12 N -0.382 5.382 13 C 0.123 3.877 14 H 0.093 0.907 15 C -0.573 4.573 16 H 0.086 0.914 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.744 3.256 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.186 1.186 23 C 0.381 3.619 24 F -0.169 7.169 25 F -0.167 7.167 26 F -0.175 7.175 27 C -0.192 4.192 28 C -0.021 4.021 29 O -0.319 6.319 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.247 0.753 40 H 0.246 0.754 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.104 19.882 10.506 23.059 hybrid contribution 0.216 -0.407 -0.276 0.537 sum -4.888 19.475 10.231 22.535 Atomic orbital electron populations 1.22445 0.95800 1.02789 1.03209 1.22335 0.94040 0.96642 0.84760 0.87295 1.22200 1.01791 0.94788 0.98829 1.21122 1.00766 0.94787 0.93521 0.90299 1.21748 1.01353 0.92346 0.99507 1.21295 0.97868 0.92328 0.87131 1.45069 1.51802 1.10606 1.31734 1.16527 0.80644 0.82237 0.81845 1.90851 1.41161 1.68968 1.50216 1.46204 1.50050 1.13405 1.28499 1.19552 0.88768 0.83095 0.96265 0.90743 1.20670 1.09802 1.32380 0.94470 0.91444 1.25522 0.93614 0.93050 1.01978 1.69917 1.11497 1.33056 1.38609 0.86118 0.78512 0.80037 0.80899 1.18896 1.19467 1.18625 1.21692 0.88456 0.72878 0.78831 1.93066 1.96149 1.76537 1.51124 1.93096 1.94114 1.36522 1.93018 1.93147 1.63357 1.86540 1.74442 1.22303 1.01759 0.99838 0.95285 1.22639 0.99162 0.81773 0.98550 1.87956 1.74233 1.25406 1.44277 0.92157 0.92144 0.90193 0.91203 0.89243 0.89591 0.90519 0.92987 0.92860 0.75350 0.75435 0.90957 0.91001 0.91451 0.92332 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 8.65 71.98 0.62 -1.47 16 2 C 0.08 1.04 3.91 30.63 0.12 1.16 16 3 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.14 -1.64 4.93 30.69 0.15 -1.48 16 5 C -0.08 -1.15 1.97 -10.68 -0.02 -1.18 16 6 H 0.08 1.11 6.62 -2.39 -0.02 1.09 16 7 C -0.11 -1.67 4.81 30.59 0.15 -1.52 16 8 C 0.14 3.20 5.43 86.38 0.47 3.67 16 9 N -0.74 -20.15 5.56 -478.53 -2.66 -22.81 16 10 C 0.69 26.51 8.22 179.06 1.47 27.99 16 11 O -0.63 -29.27 14.91 -3.98 -0.06 -29.33 16 12 N -0.73 -28.75 4.91 -461.41 -2.27 -31.01 16 13 C 0.23 10.61 1.71 44.24 0.08 10.68 16 14 H 0.07 3.70 4.73 -2.39 -0.01 3.69 16 15 C -0.54 -27.44 8.52 25.60 0.22 -27.22 16 16 H 0.07 3.77 8.00 -2.91 -0.02 3.74 16 17 C 0.07 3.40 5.47 84.65 0.46 3.86 16 18 N -0.90 -49.26 13.96 21.45 0.30 -48.96 16 19 Si 0.92 41.70 26.99 68.60 1.85 43.55 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.26 -12.19 6.82 99.48 0.68 -11.51 16 23 C 0.44 19.63 2.83 71.98 0.20 19.84 16 24 F -0.19 -7.98 16.93 44.97 0.76 -7.22 16 25 F -0.19 -8.52 16.89 44.97 0.76 -7.76 16 26 F -0.19 -8.64 15.83 44.97 0.71 -7.93 16 27 C -0.15 -2.45 5.09 30.68 0.16 -2.30 16 28 C 0.06 0.86 6.52 72.01 0.47 1.33 16 29 O -0.40 -7.23 10.60 -148.98 -1.58 -8.81 16 30 H 0.06 0.74 4.97 -2.39 -0.01 0.73 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 1.36 6.64 -2.39 -0.02 1.34 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.41 8.53 8.49 -92.70 -0.79 7.74 16 40 H 0.41 14.16 8.61 -92.71 -0.80 13.36 16 41 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.07 1.24 6.74 -2.38 -0.02 1.23 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 0.84 6.34 -2.39 -0.02 0.83 16 45 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -64.87 366.54 1.80 -63.07 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.57 Total: 23.85 kcal Atomic # 6 Polarization: 28.81 SS G_CDS: 4.55 Total: 33.36 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -4.63 Total: -102.78 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.64 Total: -38.14 kcal Atomic # 9 Polarization: -25.14 SS G_CDS: 2.23 Total: -22.91 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.85 Total: 43.55 kcal Total: -64.87 1.80 -63.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932909889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.186 kcal (2) G-P(sol) polarization free energy of solvation -64.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds