Wall clock time and date at job start Tue Mar 31 2020 21:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.48275 * 2 1 4 4 C 1.53095 * 109.48101 * 239.98411 * 2 1 3 5 5 C 1.53181 * 109.15940 * 297.62402 * 4 2 1 6 6 H 1.08999 * 109.54619 * 62.88414 * 5 4 2 7 7 C 1.53003 * 109.54346 * 183.15128 * 5 4 2 8 8 C 1.52995 * 109.47255 * 184.55111 * 7 5 4 9 9 N 1.46495 * 109.47461 * 179.97438 * 8 7 5 10 10 C 1.34778 * 120.00504 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99706 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00224 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00046 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46894 * 34.99231 * 13 12 10 15 15 C 1.50699 * 109.47269 * 154.99846 * 13 12 10 16 16 H 1.08002 * 119.99917 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00051 * 179.97438 * 15 13 12 18 18 N 1.31512 * 119.99750 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99882 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47443 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46868 * 120.00594 * 19 17 15 22 22 H 1.48499 * 109.47092 * 240.00055 * 19 17 15 23 23 C 1.52999 * 109.46720 * 274.99689 * 13 12 10 24 24 F 1.39894 * 109.47347 * 60.00287 * 23 13 12 25 25 F 1.39904 * 109.47129 * 179.97438 * 23 13 12 26 26 F 1.39899 * 109.47322 * 299.99652 * 23 13 12 27 27 C 1.53176 * 109.03560 * 303.01673 * 5 4 2 28 28 C 1.53095 * 109.16286 * 56.98068 * 27 5 4 29 29 O 1.42895 * 109.48604 * 120.03706 * 2 1 3 30 30 H 1.09006 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47369 * 300.01639 * 1 2 3 32 32 H 1.08993 * 109.47693 * 60.01824 * 1 2 3 33 33 H 1.08994 * 109.52897 * 177.71921 * 4 2 1 34 34 H 1.09002 * 109.52549 * 57.52082 * 4 2 1 35 35 H 1.08999 * 109.47007 * 304.55351 * 7 5 4 36 36 H 1.09003 * 109.46951 * 64.55746 * 7 5 4 37 37 H 1.08999 * 109.47310 * 300.00055 * 8 7 5 38 38 H 1.08999 * 109.46840 * 59.99975 * 8 7 5 39 39 H 0.97003 * 119.99503 * 0.02562 * 9 8 7 40 40 H 0.97001 * 120.00076 * 359.97438 * 12 10 9 41 41 H 0.96997 * 120.00025 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.52789 * 176.89009 * 27 5 4 43 43 H 1.09007 * 109.52321 * 297.07724 * 27 5 4 44 44 H 1.08995 * 109.48092 * 62.37615 * 28 27 5 45 45 H 1.09004 * 109.48253 * 182.40879 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7220 -1.2497 5 6 1.5757 -2.1811 -1.2125 6 1 0.4867 -2.2177 -1.2411 7 6 2.1466 -2.9310 -2.4178 8 6 1.5909 -4.3563 -2.4416 9 7 2.1371 -5.0742 -3.5959 10 6 1.7852 -6.3557 -3.8208 11 8 1.0140 -6.9157 -3.0659 12 7 2.2881 -7.0162 -4.8825 13 6 1.9052 -8.4090 -5.1272 14 1 0.8665 -8.5574 -4.8319 15 6 2.0605 -8.7225 -6.5930 16 1 2.4092 -7.9605 -7.2742 17 6 1.7575 -9.9823 -7.0644 18 7 1.3325 -10.9101 -6.2349 19 14 1.9494 -10.3708 -8.8814 20 1 2.4392 -9.1649 -9.5964 21 1 2.9259 -11.4768 -9.0507 22 1 0.6364 -10.7797 -9.4415 23 6 2.8056 -9.3367 -4.3090 24 9 2.6613 -9.0456 -2.9483 25 9 2.4396 -10.6667 -4.5422 26 9 4.1387 -9.1461 -4.6879 27 6 2.0765 -2.8322 0.0803 28 6 1.5646 -2.0286 1.2787 29 8 2.0066 -0.6743 1.1662 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5141 0.8898 32 1 -0.3634 0.5135 -0.8901 33 1 3.1297 -0.6872 -1.2712 34 1 1.6419 -0.2354 -2.1400 35 1 1.8625 -2.4149 -3.3348 36 1 3.2335 -2.9662 -2.3423 37 1 1.8750 -4.8725 -1.5246 38 1 0.5041 -4.3212 -2.5171 39 1 2.7526 -4.6274 -4.1980 40 1 2.9030 -6.5693 -5.4850 41 1 1.1189 -11.7962 -6.5665 42 1 1.7038 -3.8547 0.1415 43 1 3.1665 -2.8399 0.0858 44 1 0.4751 -2.0552 1.2955 45 1 1.9532 -2.4625 2.2001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932909891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:32 Heat of formation + Delta-G solvation = -232.299746 kcal Electronic energy + Delta-G solvation = -30521.464482 eV Core-core repulsion = 25738.050594 eV Total energy + Delta-G solvation = -4783.413888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.30212 -45.95497 -45.57120 -40.23426 -39.27757 -36.26038 -34.64519 -33.75966 -32.61964 -32.42095 -29.94475 -28.49988 -27.52232 -24.57608 -24.09439 -23.77066 -21.73253 -21.33949 -20.17037 -19.53993 -18.28830 -16.89911 -16.79719 -16.67230 -16.56344 -16.27207 -16.03596 -15.64959 -15.15396 -14.91764 -14.73135 -14.70428 -14.11563 -13.80744 -13.56937 -13.28609 -12.99982 -12.85693 -12.67533 -12.53771 -12.37864 -12.34507 -12.25223 -12.05409 -11.97505 -11.93721 -11.78652 -11.57164 -11.51283 -11.17012 -11.09145 -10.86189 -10.77357 -10.59939 -10.39093 -10.29034 -9.74024 -9.62840 -9.50376 -8.77828 -8.70268 -8.13728 -6.22862 -4.46489 3.16997 3.18712 3.26000 3.30141 3.58280 3.81201 4.19224 4.33339 4.41462 4.46203 4.60998 4.65955 4.74229 4.86591 4.94586 4.96992 5.02324 5.14163 5.15349 5.22097 5.23849 5.35259 5.49114 5.57625 5.61207 5.65675 5.75326 5.81919 5.85518 5.89783 5.91812 5.95483 6.07021 6.16293 6.25615 6.81869 6.86897 6.95904 7.23319 7.39151 7.63529 7.70798 8.50803 8.68465 9.16380 9.27580 10.68843 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.025296 B = 0.002276 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.607711 B =12297.043632 C =12839.759384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.086 3.914 3 H 0.100 0.900 4 C -0.144 4.144 5 C -0.086 4.086 6 H 0.078 0.922 7 C -0.125 4.125 8 C 0.140 3.860 9 N -0.755 5.755 10 C 0.697 3.303 11 O -0.585 6.585 12 N -0.727 5.727 13 C 0.262 3.738 14 H 0.085 0.915 15 C -0.551 4.551 16 H 0.077 0.923 17 C 0.064 3.936 18 N -0.839 5.839 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.416 3.584 24 F -0.217 7.217 25 F -0.138 7.138 26 F -0.210 7.210 27 C -0.155 4.155 28 C 0.056 3.944 29 O -0.380 6.380 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.392 0.608 40 H 0.394 0.606 41 H 0.267 0.733 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.186 19.237 8.157 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.028 3.972 3 H 0.117 0.883 4 C -0.181 4.181 5 C -0.105 4.105 6 H 0.096 0.904 7 C -0.163 4.163 8 C 0.015 3.985 9 N -0.412 5.412 10 C 0.397 3.603 11 O -0.462 6.462 12 N -0.380 5.380 13 C 0.156 3.844 14 H 0.102 0.898 15 C -0.588 4.588 16 H 0.095 0.905 17 C -0.145 4.145 18 N -0.473 5.473 19 Si 0.742 3.258 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.359 3.641 24 F -0.199 7.199 25 F -0.119 7.119 26 F -0.192 7.192 27 C -0.193 4.193 28 C -0.020 4.020 29 O -0.299 6.299 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.225 0.775 40 H 0.227 0.773 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.506 18.535 9.040 20.629 hybrid contribution 0.744 -0.240 -1.529 1.717 sum 1.250 18.295 7.511 19.817 Atomic orbital electron populations 1.22471 0.96429 1.03001 1.02642 1.22157 0.93471 0.96285 0.85284 0.88265 1.22238 1.01916 0.95626 0.98350 1.21146 1.00748 0.94246 0.94351 0.90417 1.21828 1.01148 0.94868 0.98416 1.21130 0.98204 0.90531 0.88594 1.45099 1.52515 1.12406 1.31147 1.16085 0.81248 0.80888 0.82062 1.90913 1.39213 1.67604 1.48497 1.45265 1.50450 1.14422 1.27830 1.19591 0.94936 0.74362 0.95524 0.89773 1.20918 1.49277 0.98559 0.90055 0.90474 1.25087 0.94438 0.95620 0.99323 1.70417 1.39339 1.04016 1.33500 0.86156 0.77977 0.78590 0.83070 1.19445 1.20584 1.20574 1.23180 0.79769 0.84075 0.77051 1.93069 1.95681 1.93753 1.37362 1.93401 1.90367 1.35115 1.92998 1.92980 1.39333 1.95535 1.91396 1.22337 1.02158 1.00187 0.94621 1.22604 0.98863 0.82083 0.98478 1.87979 1.73744 1.24955 1.43177 0.91612 0.91966 0.91466 0.90946 0.90812 0.91158 0.91183 0.91748 0.92037 0.77516 0.77291 0.92185 0.90164 0.90890 0.92821 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 8.65 37.15 0.32 -0.91 16 2 C 0.09 0.64 3.91 -26.69 -0.10 0.53 16 3 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.14 -1.00 4.93 -26.59 -0.13 -1.13 16 5 C -0.09 -0.67 1.97 -90.43 -0.18 -0.85 16 6 H 0.08 0.62 6.62 -51.93 -0.34 0.27 16 7 C -0.12 -1.06 4.81 -26.73 -0.13 -1.19 16 8 C 0.14 1.73 5.43 -4.05 -0.02 1.70 16 9 N -0.75 -10.90 5.56 -65.23 -0.36 -11.26 16 10 C 0.70 14.03 8.10 -86.92 -0.70 13.33 16 11 O -0.59 -14.23 14.91 5.29 0.08 -14.15 16 12 N -0.73 -14.98 4.99 -59.81 -0.30 -15.28 16 13 C 0.26 6.58 2.21 -69.08 -0.15 6.43 16 14 H 0.08 2.38 7.58 -51.93 -0.39 1.99 16 15 C -0.55 -14.07 8.46 -34.44 -0.29 -14.36 16 16 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 17 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 18 N -0.84 -23.12 9.50 55.43 0.53 -22.59 16 19 Si 0.92 20.08 29.54 -169.99 -5.02 15.06 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.42 10.82 2.81 37.16 0.10 10.93 16 24 F -0.22 -5.65 15.67 2.25 0.04 -5.61 16 25 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 26 F -0.21 -5.25 16.94 2.25 0.04 -5.21 16 27 C -0.16 -1.31 5.09 -26.59 -0.14 -1.44 16 28 C 0.06 0.46 6.52 37.21 0.24 0.71 16 29 O -0.38 -3.64 10.60 -35.23 -0.37 -4.01 16 30 H 0.06 0.46 4.98 -51.93 -0.26 0.20 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.87 6.65 -51.93 -0.35 0.53 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.39 4.44 8.49 -40.82 -0.35 4.09 16 40 H 0.39 6.91 8.55 -40.82 -0.35 6.56 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.08 0.71 6.74 -51.93 -0.35 0.36 16 43 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 44 H 0.05 0.41 6.34 -51.93 -0.33 0.08 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -31.70 363.43 -7.63 -39.32 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.48 Total: 6.78 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: -1.27 Total: 15.31 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.13 Total: -49.13 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.29 Total: -18.16 kcal Atomic # 9 Polarization: -14.76 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.70 -7.63 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932909891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.975 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds