Wall clock time and date at job start Tue Mar 31 2020 21:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.48275 * 2 1 4 4 C 1.53095 * 109.48101 * 239.98411 * 2 1 3 5 5 C 1.53181 * 109.15940 * 297.62402 * 4 2 1 6 6 H 1.08999 * 109.54619 * 62.88414 * 5 4 2 7 7 C 1.53003 * 109.54346 * 183.15128 * 5 4 2 8 8 C 1.52995 * 109.47255 * 184.55111 * 7 5 4 9 9 N 1.46495 * 109.47461 * 179.97438 * 8 7 5 10 10 C 1.34778 * 120.00504 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99706 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00224 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00046 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46894 * 34.99231 * 13 12 10 15 15 C 1.50699 * 109.47269 * 154.99846 * 13 12 10 16 16 H 1.08002 * 119.99917 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00051 * 179.97438 * 15 13 12 18 18 N 1.31512 * 119.99750 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99882 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47443 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46868 * 120.00594 * 19 17 15 22 22 H 1.48499 * 109.47092 * 240.00055 * 19 17 15 23 23 C 1.52999 * 109.46720 * 274.99689 * 13 12 10 24 24 F 1.39894 * 109.47347 * 60.00287 * 23 13 12 25 25 F 1.39904 * 109.47129 * 179.97438 * 23 13 12 26 26 F 1.39899 * 109.47322 * 299.99652 * 23 13 12 27 27 C 1.53176 * 109.03560 * 303.01673 * 5 4 2 28 28 C 1.53095 * 109.16286 * 56.98068 * 27 5 4 29 29 O 1.42895 * 109.48604 * 120.03706 * 2 1 3 30 30 H 1.09006 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47369 * 300.01639 * 1 2 3 32 32 H 1.08993 * 109.47693 * 60.01824 * 1 2 3 33 33 H 1.08994 * 109.52897 * 177.71921 * 4 2 1 34 34 H 1.09002 * 109.52549 * 57.52082 * 4 2 1 35 35 H 1.08999 * 109.47007 * 304.55351 * 7 5 4 36 36 H 1.09003 * 109.46951 * 64.55746 * 7 5 4 37 37 H 1.08999 * 109.47310 * 300.00055 * 8 7 5 38 38 H 1.08999 * 109.46840 * 59.99975 * 8 7 5 39 39 H 0.97003 * 119.99503 * 0.02562 * 9 8 7 40 40 H 0.97001 * 120.00076 * 359.97438 * 12 10 9 41 41 H 0.96997 * 120.00025 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.52789 * 176.89009 * 27 5 4 43 43 H 1.09007 * 109.52321 * 297.07724 * 27 5 4 44 44 H 1.08995 * 109.48092 * 62.37615 * 28 27 5 45 45 H 1.09004 * 109.48253 * 182.40879 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7220 -1.2497 5 6 1.5757 -2.1811 -1.2125 6 1 0.4867 -2.2177 -1.2411 7 6 2.1466 -2.9310 -2.4178 8 6 1.5909 -4.3563 -2.4416 9 7 2.1371 -5.0742 -3.5959 10 6 1.7852 -6.3557 -3.8208 11 8 1.0140 -6.9157 -3.0659 12 7 2.2881 -7.0162 -4.8825 13 6 1.9052 -8.4090 -5.1272 14 1 0.8665 -8.5574 -4.8319 15 6 2.0605 -8.7225 -6.5930 16 1 2.4092 -7.9605 -7.2742 17 6 1.7575 -9.9823 -7.0644 18 7 1.3325 -10.9101 -6.2349 19 14 1.9494 -10.3708 -8.8814 20 1 2.4392 -9.1649 -9.5964 21 1 2.9259 -11.4768 -9.0507 22 1 0.6364 -10.7797 -9.4415 23 6 2.8056 -9.3367 -4.3090 24 9 2.6613 -9.0456 -2.9483 25 9 2.4396 -10.6667 -4.5422 26 9 4.1387 -9.1461 -4.6879 27 6 2.0765 -2.8322 0.0803 28 6 1.5646 -2.0286 1.2787 29 8 2.0066 -0.6743 1.1662 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5141 0.8898 32 1 -0.3634 0.5135 -0.8901 33 1 3.1297 -0.6872 -1.2712 34 1 1.6419 -0.2354 -2.1400 35 1 1.8625 -2.4149 -3.3348 36 1 3.2335 -2.9662 -2.3423 37 1 1.8750 -4.8725 -1.5246 38 1 0.5041 -4.3212 -2.5171 39 1 2.7526 -4.6274 -4.1980 40 1 2.9030 -6.5693 -5.4850 41 1 1.1189 -11.7962 -6.5665 42 1 1.7038 -3.8547 0.1415 43 1 3.1665 -2.8399 0.0858 44 1 0.4751 -2.0552 1.2955 45 1 1.9532 -2.4625 2.2001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932909891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:31 Heat of formation + Delta-G solvation = -253.828543 kcal Electronic energy + Delta-G solvation = -30522.398041 eV Core-core repulsion = 25738.050594 eV Total energy + Delta-G solvation = -4784.347447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.39786 -48.03237 -47.70983 -41.06568 -40.66188 -37.30585 -36.35197 -34.96644 -34.36549 -33.13653 -31.07063 -29.79309 -28.50109 -26.57637 -25.06928 -24.41430 -23.40585 -22.26874 -21.82384 -20.20165 -19.90984 -18.86211 -18.75873 -18.54708 -17.85482 -17.38289 -16.89474 -16.88823 -16.59692 -16.39657 -15.84176 -15.51582 -15.28099 -15.13376 -14.93933 -14.87029 -14.53859 -14.44456 -14.38305 -14.28044 -14.01403 -13.86877 -13.75397 -13.37869 -13.11207 -12.98618 -12.78529 -12.74578 -12.64141 -12.61173 -12.33780 -12.19362 -12.09187 -11.76164 -11.53818 -11.29644 -11.26602 -10.89046 -10.69191 -10.35232 -10.28728 -9.74155 -8.20383 -6.51116 1.46760 1.47961 1.60511 1.76584 2.15792 2.37852 2.57898 2.95493 2.98556 3.33040 3.68355 3.77713 3.80561 3.88033 3.90891 4.03107 4.15245 4.21168 4.26635 4.34685 4.46360 4.53097 4.56893 4.60000 4.68061 4.81553 4.89476 4.93419 4.96576 5.02529 5.10690 5.14706 5.23441 5.28571 5.33513 5.45016 5.52242 5.53255 5.59089 5.66699 6.16277 6.35163 6.54638 7.17607 7.23133 7.67616 8.72741 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.025296 B = 0.002276 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.607711 B =12297.043632 C =12839.759384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.079 3.921 3 H 0.110 0.890 4 C -0.138 4.138 5 C -0.084 4.084 6 H 0.078 0.922 7 C -0.110 4.110 8 C 0.138 3.862 9 N -0.731 5.731 10 C 0.692 3.308 11 O -0.631 6.631 12 N -0.720 5.720 13 C 0.271 3.729 14 H 0.045 0.955 15 C -0.559 4.559 16 H 0.093 0.907 17 C 0.013 3.987 18 N -0.876 5.876 19 Si 0.985 3.015 20 H -0.254 1.254 21 H -0.282 1.282 22 H -0.278 1.278 23 C 0.412 3.588 24 F -0.220 7.220 25 F -0.151 7.151 26 F -0.203 7.203 27 C -0.154 4.154 28 C 0.055 3.945 29 O -0.399 6.399 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.411 0.589 40 H 0.410 0.590 41 H 0.268 0.732 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 21.311 6.646 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.022 3.978 3 H 0.128 0.872 4 C -0.175 4.175 5 C -0.103 4.103 6 H 0.096 0.904 7 C -0.148 4.148 8 C 0.014 3.986 9 N -0.388 5.388 10 C 0.392 3.608 11 O -0.512 6.512 12 N -0.375 5.375 13 C 0.162 3.838 14 H 0.063 0.937 15 C -0.596 4.596 16 H 0.111 0.889 17 C -0.192 4.192 18 N -0.510 5.510 19 Si 0.808 3.192 20 H -0.178 1.178 21 H -0.208 1.208 22 H -0.204 1.204 23 C 0.356 3.644 24 F -0.202 7.202 25 F -0.133 7.133 26 F -0.185 7.185 27 C -0.192 4.192 28 C -0.021 4.021 29 O -0.318 6.318 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.248 0.752 40 H 0.247 0.753 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.336 20.694 7.518 22.058 hybrid contribution 0.494 -0.839 -0.969 1.374 sum 1.829 19.855 6.549 20.987 Atomic orbital electron populations 1.22447 0.95856 1.02764 1.03201 1.22341 0.94005 0.96666 0.84795 0.87248 1.22195 1.01827 0.94695 0.98811 1.21131 1.00765 0.94850 0.93529 0.90364 1.21740 1.01391 0.92154 0.99526 1.21292 0.97868 0.92387 0.87042 1.44939 1.51847 1.10372 1.31687 1.16313 0.80824 0.82286 0.81388 1.90883 1.41264 1.69105 1.49953 1.44989 1.50906 1.13004 1.28561 1.19166 0.92762 0.76422 0.95412 0.93718 1.21258 1.48993 0.99068 0.90285 0.88875 1.26023 0.93896 0.95503 1.03776 1.70547 1.40373 1.04431 1.35623 0.85090 0.77793 0.78650 0.77645 1.17758 1.20759 1.20358 1.23372 0.80247 0.83758 0.77060 1.93059 1.95738 1.93712 1.37652 1.93374 1.90567 1.36214 1.93096 1.92979 1.38760 1.95455 1.91316 1.22306 1.01799 0.99792 0.95316 1.22634 0.99135 0.81794 0.98565 1.87953 1.74215 1.25373 1.44304 0.92210 0.92187 0.90161 0.91109 0.89178 0.89434 0.90385 0.93127 0.92964 0.75245 0.75339 0.92186 0.91125 0.91361 0.92402 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 8.65 71.98 0.62 -1.50 16 2 C 0.08 1.03 3.91 30.62 0.12 1.15 16 3 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 4 C -0.14 -1.59 4.93 30.69 0.15 -1.44 16 5 C -0.08 -1.17 1.97 -10.67 -0.02 -1.19 16 6 H 0.08 1.11 6.62 -2.39 -0.02 1.10 16 7 C -0.11 -1.62 4.81 30.59 0.15 -1.47 16 8 C 0.14 3.26 5.43 86.38 0.47 3.73 16 9 N -0.73 -20.03 5.56 -478.56 -2.66 -22.70 16 10 C 0.69 27.66 8.10 179.06 1.45 29.11 16 11 O -0.63 -31.35 14.91 -3.99 -0.06 -31.41 16 12 N -0.72 -29.24 4.99 -461.42 -2.30 -31.55 16 13 C 0.27 13.71 2.21 44.24 0.10 13.81 16 14 H 0.05 2.63 7.58 -2.39 -0.02 2.62 16 15 C -0.56 -28.17 8.46 25.60 0.22 -27.95 16 16 H 0.09 4.29 7.74 -2.91 -0.02 4.27 16 17 C 0.01 0.68 5.20 84.66 0.44 1.12 16 18 N -0.88 -48.78 9.50 21.45 0.20 -48.58 16 19 Si 0.98 40.35 29.54 68.60 2.03 42.37 16 20 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 21 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 23 C 0.41 21.69 2.81 71.98 0.20 21.89 16 24 F -0.22 -11.65 15.67 44.97 0.70 -10.94 16 25 F -0.15 -8.65 12.91 44.97 0.58 -8.07 16 26 F -0.20 -10.03 16.94 44.97 0.76 -9.27 16 27 C -0.15 -2.50 5.09 30.69 0.16 -2.34 16 28 C 0.06 0.88 6.52 72.01 0.47 1.35 16 29 O -0.40 -7.25 10.60 -148.98 -1.58 -8.83 16 30 H 0.06 0.75 4.98 -2.38 -0.01 0.74 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.36 6.65 -2.39 -0.02 1.35 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.41 8.20 8.49 -92.71 -0.79 7.41 16 40 H 0.41 13.67 8.55 -92.71 -0.79 12.88 16 41 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.07 1.27 6.74 -2.39 -0.02 1.25 16 43 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.06 0.86 6.34 -2.39 -0.02 0.84 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.82 363.43 1.66 -67.17 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.54 Total: 25.54 kcal Atomic # 6 Polarization: 31.74 SS G_CDS: 4.52 Total: 36.26 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -4.76 Total: -102.82 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.64 Total: -40.24 kcal Atomic # 9 Polarization: -30.33 SS G_CDS: 2.05 Total: -28.28 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -68.82 1.66 -67.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932909891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.662 kcal (2) G-P(sol) polarization free energy of solvation -68.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds