Wall clock time and date at job start Tue Mar 31 2020 21:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47282 * 2 1 4 4 O 1.42901 * 109.47490 * 120.00337 * 2 1 3 5 5 C 1.42903 * 114.00082 * 149.99427 * 4 2 1 6 6 C 1.53043 * 109.45720 * 150.00191 * 5 4 2 7 7 C 1.53185 * 109.30963 * 181.38586 * 6 5 4 8 8 N 1.46919 * 108.77769 * 305.36406 * 7 6 5 9 9 C 1.34777 * 120.63234 * 233.58455 * 8 7 6 10 10 O 1.21588 * 120.00356 * 185.23715 * 9 8 7 11 11 N 1.34776 * 119.99746 * 4.96692 * 9 8 7 12 12 C 1.46500 * 119.99814 * 175.47784 * 11 9 8 13 13 H 1.09002 * 109.46975 * 324.99373 * 12 11 9 14 14 C 1.50704 * 109.46839 * 204.99764 * 12 11 9 15 15 H 1.07999 * 119.99642 * 265.10235 * 14 12 11 16 16 C 1.37878 * 119.99903 * 85.10313 * 14 12 11 17 17 N 1.31521 * 119.99677 * 184.87124 * 16 14 12 18 18 Si 1.86798 * 120.00219 * 4.87275 * 16 14 12 19 19 H 1.48504 * 109.47028 * 94.54857 * 18 16 14 20 20 H 1.48497 * 109.47248 * 214.55014 * 18 16 14 21 21 H 1.48495 * 109.46883 * 334.55244 * 18 16 14 22 22 C 1.52994 * 109.47386 * 84.99738 * 12 11 9 23 23 F 1.39901 * 109.47405 * 64.23645 * 22 12 11 24 24 F 1.39900 * 109.47294 * 184.23794 * 22 12 11 25 25 F 1.39901 * 109.47104 * 304.23572 * 22 12 11 26 26 C 1.46932 * 118.73872 * 53.86405 * 8 7 6 27 27 C 1.53034 * 109.46152 * 270.06935 * 5 4 2 28 28 H 1.09003 * 109.46746 * 299.99873 * 1 2 3 29 29 H 1.09000 * 109.47286 * 59.99405 * 1 2 3 30 30 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46746 * 240.00127 * 2 1 3 32 32 H 1.08997 * 109.46741 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46792 * 300.00149 * 3 2 1 34 34 H 1.08998 * 109.46760 * 60.00634 * 3 2 1 35 35 H 1.08998 * 109.45557 * 30.02711 * 5 4 2 36 36 H 1.08993 * 109.49583 * 61.43218 * 6 5 4 37 37 H 1.09001 * 109.51900 * 301.35197 * 6 5 4 38 38 H 1.08999 * 109.58509 * 185.57498 * 7 6 5 39 39 H 1.08999 * 109.70477 * 65.22374 * 7 6 5 40 40 H 0.97000 * 120.00231 * 355.47316 * 11 9 8 41 41 H 0.97002 * 119.99824 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.58603 * 65.92343 * 26 8 7 43 43 H 1.08996 * 109.58419 * 186.35190 * 26 8 7 44 44 H 1.09005 * 109.50124 * 298.56894 * 27 5 4 45 45 H 1.09006 * 109.49838 * 58.63014 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9884 6 6 4.0212 -1.3471 2.3194 7 6 5.3850 -2.0145 2.1168 8 7 5.1785 -3.3400 1.5177 9 6 5.7048 -4.4414 2.0891 10 8 5.6085 -5.5192 1.5346 11 7 6.3427 -4.3472 3.2727 12 6 6.8277 -5.5569 3.9417 13 1 6.1336 -6.3769 3.7578 14 6 6.9268 -5.3055 5.4243 15 1 7.8667 -4.9978 5.8582 16 6 5.8174 -5.4684 6.2267 17 7 5.8779 -5.1574 7.5032 18 14 4.2288 -6.1308 5.5010 19 1 4.1657 -7.6002 5.7060 20 1 3.0714 -5.4871 6.1728 21 1 4.1863 -5.8317 4.0471 22 6 8.2080 -5.9244 3.3934 23 9 9.1213 -4.9144 3.7143 24 9 8.6291 -7.1316 3.9613 25 9 8.1357 -6.0632 2.0032 26 6 4.3926 -3.4415 0.2804 27 6 3.0352 -2.7587 0.5067 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.8530 -0.7827 0.2469 36 1 3.4461 -1.9102 3.0544 37 1 4.1646 -0.3264 2.6740 38 1 5.8856 -2.1223 3.0790 39 1 5.9975 -1.4048 1.4527 40 1 6.4807 -3.4784 3.6815 41 1 5.0976 -5.2724 8.0678 42 1 4.9237 -2.9448 -0.5315 43 1 4.2382 -4.4912 0.0307 44 1 2.4694 -3.3086 1.2588 45 1 2.4764 -2.7427 -0.4291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932914222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:50 Heat of formation + Delta-G solvation = -237.467852 kcal Electronic energy + Delta-G solvation = -31620.363248 eV Core-core repulsion = 26836.725254 eV Total energy + Delta-G solvation = -4783.637994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.00906 -46.51535 -46.50498 -40.14078 -38.82051 -36.62442 -34.80760 -33.31512 -32.58830 -31.24380 -30.95472 -28.70539 -27.51921 -24.94346 -24.67295 -23.40780 -21.62677 -21.40446 -20.69628 -19.31586 -18.55052 -17.55271 -17.48373 -17.00859 -16.72621 -16.41866 -15.76174 -15.30143 -15.04478 -15.03493 -14.42247 -14.15264 -13.95386 -13.71814 -13.55993 -13.41336 -13.17782 -13.04779 -12.95624 -12.89337 -12.70775 -12.68979 -12.62335 -12.50164 -12.35128 -12.19056 -12.00826 -11.88274 -11.68542 -11.31729 -11.13711 -11.01111 -10.95090 -10.65449 -10.56813 -10.08970 -9.82134 -9.67139 -9.49630 -8.97472 -8.58380 -8.17004 -6.52853 -4.67666 2.96850 3.15651 3.22479 3.33956 3.39848 3.67731 4.00687 4.12650 4.26512 4.56105 4.64546 4.71869 4.82591 4.90496 4.93315 4.99310 5.03378 5.17243 5.20448 5.23535 5.25256 5.29840 5.38587 5.47313 5.51801 5.55268 5.57872 5.66475 5.75280 5.80363 5.90150 5.92620 5.95295 6.06554 6.21733 6.32975 6.74179 6.92346 7.14053 7.22339 7.39594 7.91012 8.53358 8.59477 9.03414 9.17375 10.55164 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.003609 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.694354 B = 7757.475741 C = 8618.417316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.175 4.175 4 O -0.375 6.375 5 C 0.094 3.906 6 C -0.131 4.131 7 C 0.115 3.885 8 N -0.637 5.637 9 C 0.698 3.302 10 O -0.590 6.590 11 N -0.729 5.729 12 C 0.221 3.779 13 H 0.088 0.912 14 C -0.537 4.537 15 H 0.094 0.906 16 C 0.101 3.899 17 N -0.859 5.859 18 Si 0.867 3.133 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.249 1.249 22 C 0.439 3.561 23 F -0.192 7.192 24 F -0.186 7.186 25 F -0.192 7.192 26 C 0.134 3.866 27 C -0.156 4.156 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.394 0.606 41 H 0.275 0.725 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 11.507 -13.645 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 C -0.232 4.232 4 O -0.295 6.295 5 C 0.036 3.964 6 C -0.170 4.170 7 C -0.009 4.009 8 N -0.376 5.376 9 C 0.400 3.600 10 O -0.468 6.468 11 N -0.386 5.386 12 C 0.117 3.883 13 H 0.105 0.895 14 C -0.575 4.575 15 H 0.112 0.888 16 C -0.109 4.109 17 N -0.492 5.492 18 Si 0.692 3.308 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.173 1.173 22 C 0.383 3.617 23 F -0.173 7.173 24 F -0.168 7.168 25 F -0.174 7.174 26 C 0.010 3.990 27 C -0.195 4.195 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.050 10.689 -13.670 18.730 hybrid contribution -0.448 0.176 -0.337 0.588 sum -7.498 10.865 -14.007 19.248 Atomic orbital electron populations 1.21861 0.93788 1.02716 1.02343 1.22087 0.94936 0.92321 0.88474 1.22315 1.01550 0.96911 1.02456 1.87991 1.36800 1.69494 1.35204 1.22079 0.84734 0.92099 0.97463 1.21999 0.95928 1.01944 0.97126 1.21561 0.96164 0.83832 0.99329 1.47375 1.56829 1.05820 1.27589 1.16310 0.78622 0.83642 0.81395 1.90861 1.65169 1.26505 1.64270 1.47011 1.60061 1.11466 1.20073 1.19936 0.86675 0.87825 0.93840 0.89474 1.20808 1.00055 1.50002 0.86635 0.88772 1.24962 0.98752 0.92689 0.94515 1.69874 1.31214 1.42929 1.05189 0.86919 0.82499 0.80147 0.81242 1.19430 1.20610 1.17255 1.21647 0.90995 0.74144 0.74912 1.93069 1.70599 1.61053 1.92606 1.93094 1.91667 1.46973 1.85045 1.93149 1.96725 1.95684 1.31843 1.21388 0.89525 1.02637 0.85404 1.22554 0.98147 0.96574 1.02205 0.91813 0.91476 0.91997 0.92332 0.92480 0.91858 0.91770 0.92163 0.90318 0.90113 0.89217 0.91475 0.76730 0.91514 0.92157 0.88597 0.90581 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.56 37.16 0.36 -0.81 16 2 C 0.08 0.70 3.13 -26.73 -0.08 0.61 16 3 C -0.17 -1.32 9.52 37.16 0.35 -0.96 16 4 O -0.38 -4.33 9.63 -35.23 -0.34 -4.67 16 5 C 0.09 1.03 2.36 -26.69 -0.06 0.96 16 6 C -0.13 -1.54 5.73 -26.61 -0.15 -1.69 16 7 C 0.12 1.44 6.43 -3.72 -0.02 1.41 16 8 N -0.64 -10.10 2.97 -178.24 -0.53 -10.62 16 9 C 0.70 14.23 7.56 -86.92 -0.66 13.57 16 10 O -0.59 -13.92 14.17 5.29 0.07 -13.85 16 11 N -0.73 -15.10 4.78 -59.81 -0.29 -15.38 16 12 C 0.22 5.17 1.37 -69.08 -0.09 5.08 16 13 H 0.09 2.18 5.24 -51.93 -0.27 1.90 16 14 C -0.54 -13.74 8.68 -34.44 -0.30 -14.04 16 15 H 0.09 2.60 7.68 -52.49 -0.40 2.20 16 16 C 0.10 2.63 5.47 -17.82 -0.10 2.53 16 17 N -0.86 -23.52 13.96 55.43 0.77 -22.75 16 18 Si 0.87 20.27 27.18 -169.99 -4.62 15.65 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.25 -5.95 6.24 56.52 0.35 -5.59 16 22 C 0.44 9.97 2.83 37.15 0.11 10.08 16 23 F -0.19 -4.21 16.64 2.25 0.04 -4.18 16 24 F -0.19 -4.26 17.12 2.25 0.04 -4.22 16 25 F -0.19 -4.38 15.37 2.25 0.03 -4.34 16 26 C 0.13 1.80 6.45 -3.48 -0.02 1.78 16 27 C -0.16 -1.83 5.70 -26.39 -0.15 -1.98 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.47 7.61 -51.93 -0.40 0.07 16 32 H 0.06 0.43 7.96 -51.93 -0.41 0.02 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.57 7.62 -51.93 -0.40 0.18 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.15 5.56 -51.93 -0.29 0.86 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.39 7.39 6.05 -40.82 -0.25 7.14 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.47 7.03 -51.93 -0.37 1.10 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.07 0.71 7.95 -51.93 -0.41 0.29 16 LS Contribution 369.51 15.07 5.57 5.57 Total: -1.00 -30.25 369.51 -6.68 -36.93 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.60 Total: 5.32 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: -0.83 Total: 16.55 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.04 Total: -48.76 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.26 Total: -18.52 kcal Atomic # 9 Polarization: -12.85 SS G_CDS: 0.11 Total: -12.74 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.62 Total: 15.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.25 -6.68 -36.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.540 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds