Wall clock time and date at job start Tue Mar 31 2020 21:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47282 * 2 1 4 4 O 1.42901 * 109.47490 * 120.00337 * 2 1 3 5 5 C 1.42903 * 114.00082 * 149.99427 * 4 2 1 6 6 C 1.53043 * 109.45720 * 150.00191 * 5 4 2 7 7 C 1.53185 * 109.30963 * 181.38586 * 6 5 4 8 8 N 1.46919 * 108.77769 * 305.36406 * 7 6 5 9 9 C 1.34777 * 120.63234 * 233.58455 * 8 7 6 10 10 O 1.21588 * 120.00356 * 185.23715 * 9 8 7 11 11 N 1.34776 * 119.99746 * 4.96692 * 9 8 7 12 12 C 1.46500 * 119.99814 * 175.47784 * 11 9 8 13 13 H 1.09002 * 109.46975 * 324.99373 * 12 11 9 14 14 C 1.50704 * 109.46839 * 204.99764 * 12 11 9 15 15 H 1.07999 * 119.99642 * 265.10235 * 14 12 11 16 16 C 1.37878 * 119.99903 * 85.10313 * 14 12 11 17 17 N 1.31521 * 119.99677 * 184.87124 * 16 14 12 18 18 Si 1.86798 * 120.00219 * 4.87275 * 16 14 12 19 19 H 1.48504 * 109.47028 * 94.54857 * 18 16 14 20 20 H 1.48497 * 109.47248 * 214.55014 * 18 16 14 21 21 H 1.48495 * 109.46883 * 334.55244 * 18 16 14 22 22 C 1.52994 * 109.47386 * 84.99738 * 12 11 9 23 23 F 1.39901 * 109.47405 * 64.23645 * 22 12 11 24 24 F 1.39900 * 109.47294 * 184.23794 * 22 12 11 25 25 F 1.39901 * 109.47104 * 304.23572 * 22 12 11 26 26 C 1.46932 * 118.73872 * 53.86405 * 8 7 6 27 27 C 1.53034 * 109.46152 * 270.06935 * 5 4 2 28 28 H 1.09003 * 109.46746 * 299.99873 * 1 2 3 29 29 H 1.09000 * 109.47286 * 59.99405 * 1 2 3 30 30 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46746 * 240.00127 * 2 1 3 32 32 H 1.08997 * 109.46741 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46792 * 300.00149 * 3 2 1 34 34 H 1.08998 * 109.46760 * 60.00634 * 3 2 1 35 35 H 1.08998 * 109.45557 * 30.02711 * 5 4 2 36 36 H 1.08993 * 109.49583 * 61.43218 * 6 5 4 37 37 H 1.09001 * 109.51900 * 301.35197 * 6 5 4 38 38 H 1.08999 * 109.58509 * 185.57498 * 7 6 5 39 39 H 1.08999 * 109.70477 * 65.22374 * 7 6 5 40 40 H 0.97000 * 120.00231 * 355.47316 * 11 9 8 41 41 H 0.97002 * 119.99824 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.58603 * 65.92343 * 26 8 7 43 43 H 1.08996 * 109.58419 * 186.35190 * 26 8 7 44 44 H 1.09005 * 109.50124 * 298.56894 * 27 5 4 45 45 H 1.09006 * 109.49838 * 58.63014 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9884 6 6 4.0212 -1.3471 2.3194 7 6 5.3850 -2.0145 2.1168 8 7 5.1785 -3.3400 1.5177 9 6 5.7048 -4.4414 2.0891 10 8 5.6085 -5.5192 1.5346 11 7 6.3427 -4.3472 3.2727 12 6 6.8277 -5.5569 3.9417 13 1 6.1336 -6.3769 3.7578 14 6 6.9268 -5.3055 5.4243 15 1 7.8667 -4.9978 5.8582 16 6 5.8174 -5.4684 6.2267 17 7 5.8779 -5.1574 7.5032 18 14 4.2288 -6.1308 5.5010 19 1 4.1657 -7.6002 5.7060 20 1 3.0714 -5.4871 6.1728 21 1 4.1863 -5.8317 4.0471 22 6 8.2080 -5.9244 3.3934 23 9 9.1213 -4.9144 3.7143 24 9 8.6291 -7.1316 3.9613 25 9 8.1357 -6.0632 2.0032 26 6 4.3926 -3.4415 0.2804 27 6 3.0352 -2.7587 0.5067 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.8530 -0.7827 0.2469 36 1 3.4461 -1.9102 3.0544 37 1 4.1646 -0.3264 2.6740 38 1 5.8856 -2.1223 3.0790 39 1 5.9975 -1.4048 1.4527 40 1 6.4807 -3.4784 3.6815 41 1 5.0976 -5.2724 8.0678 42 1 4.9237 -2.9448 -0.5315 43 1 4.2382 -4.4912 0.0307 44 1 2.4694 -3.3086 1.2588 45 1 2.4764 -2.7427 -0.4291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932914222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:49 Heat of formation + Delta-G solvation = -256.263386 kcal Electronic energy + Delta-G solvation = -31621.178283 eV Core-core repulsion = 26836.725254 eV Total energy + Delta-G solvation = -4784.453029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.85397 -48.36075 -48.34177 -41.46913 -39.85570 -37.79097 -36.59338 -34.60976 -34.07090 -32.42226 -31.95817 -30.37865 -28.08744 -26.90083 -25.80808 -24.45977 -23.21739 -22.20660 -21.92098 -20.81827 -20.09731 -19.31296 -19.12094 -18.52761 -18.37656 -17.82568 -17.29535 -16.41988 -16.37567 -15.99430 -15.76562 -15.48149 -15.24823 -15.22409 -14.92424 -14.83557 -14.77873 -14.70057 -14.54506 -14.51646 -14.48289 -14.20810 -13.81173 -13.64609 -13.42377 -13.07741 -13.05857 -12.94413 -12.83453 -12.57768 -12.53679 -12.29734 -11.98061 -11.85861 -11.83521 -11.74536 -11.41501 -11.19860 -10.98546 -10.40120 -10.22652 -9.54394 -8.56265 -6.74066 1.22060 1.31318 1.43323 1.60431 1.93356 2.15765 2.27532 2.67439 2.70452 3.06077 3.31804 3.38226 3.61308 3.73414 3.78540 3.98356 4.05053 4.10942 4.18988 4.26997 4.32733 4.33345 4.42791 4.48528 4.62281 4.77062 4.77670 4.81958 4.92783 4.93139 4.96002 4.97904 4.99964 5.10806 5.24077 5.33305 5.37178 5.50199 5.59503 5.82074 6.01833 6.40284 6.43687 6.99214 7.03449 7.58965 8.55784 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.003609 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.694354 B = 7757.475741 C = 8618.417316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 C -0.172 4.172 4 O -0.396 6.396 5 C 0.098 3.902 6 C -0.127 4.127 7 C 0.111 3.889 8 N -0.632 5.632 9 C 0.693 3.307 10 O -0.626 6.626 11 N -0.727 5.727 12 C 0.230 3.770 13 H 0.073 0.927 14 C -0.537 4.537 15 H 0.069 0.931 16 C 0.069 3.931 17 N -0.895 5.895 18 Si 0.920 3.080 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.259 1.259 22 C 0.441 3.559 23 F -0.186 7.186 24 F -0.188 7.188 25 F -0.190 7.190 26 C 0.132 3.868 27 C -0.148 4.148 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.405 0.595 41 H 0.280 0.720 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 13.299 -15.657 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 C -0.229 4.229 4 O -0.316 6.316 5 C 0.040 3.960 6 C -0.166 4.166 7 C -0.011 4.011 8 N -0.370 5.370 9 C 0.395 3.605 10 O -0.507 6.507 11 N -0.385 5.385 12 C 0.124 3.876 13 H 0.091 0.909 14 C -0.575 4.575 15 H 0.087 0.913 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.744 3.256 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.183 1.183 22 C 0.385 3.615 23 F -0.168 7.168 24 F -0.170 7.170 25 F -0.172 7.172 26 C 0.009 3.991 27 C -0.186 4.186 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.244 0.756 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.765 12.539 -15.694 21.537 hybrid contribution -0.221 -0.312 0.211 0.437 sum -7.986 12.227 -15.483 21.284 Atomic orbital electron populations 1.21885 0.93405 1.02400 1.02997 1.22326 0.95356 0.92937 0.87966 1.22289 1.01653 0.96067 1.02900 1.87981 1.36994 1.69776 1.36836 1.22036 0.84997 0.91644 0.97315 1.21948 0.95070 1.02365 0.97205 1.21819 0.97219 0.82442 0.99660 1.47457 1.55789 1.05804 1.27954 1.16380 0.78660 0.84343 0.81079 1.90832 1.66489 1.28308 1.65092 1.46503 1.60481 1.10993 1.20554 1.19606 0.86853 0.88267 0.92849 0.90902 1.20726 0.99036 1.49932 0.87834 0.91316 1.25438 1.00905 0.92822 0.94620 1.69930 1.32287 1.44550 1.06201 0.86107 0.80001 0.79638 0.79835 1.19245 1.19850 1.18315 1.21519 0.90815 0.74185 0.74953 1.93076 1.70341 1.60814 1.92581 1.93089 1.91667 1.47108 1.85092 1.93153 1.96718 1.95682 1.31629 1.21579 0.90472 1.01995 0.85053 1.22475 0.96879 0.96740 1.02529 0.92631 0.89382 0.92800 0.91122 0.92257 0.90153 0.92633 0.89670 0.93092 0.88166 0.89911 0.88123 0.75550 0.91031 0.89030 0.90888 0.93410 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.56 71.98 0.69 -1.33 16 2 C 0.07 1.05 3.13 30.59 0.10 1.15 16 3 C -0.17 -2.07 9.52 71.98 0.69 -1.38 16 4 O -0.40 -8.26 9.63 -148.98 -1.44 -9.70 16 5 C 0.10 1.86 2.36 30.62 0.07 1.93 16 6 C -0.13 -2.71 5.73 30.67 0.18 -2.54 16 7 C 0.11 2.51 6.43 86.36 0.56 3.06 16 8 N -0.63 -19.05 2.97 -836.10 -2.48 -21.53 16 9 C 0.69 27.85 7.56 179.05 1.35 29.21 16 10 O -0.63 -29.52 14.17 -3.99 -0.06 -29.57 16 11 N -0.73 -29.88 4.78 -461.41 -2.20 -32.08 16 12 C 0.23 10.78 1.37 44.24 0.06 10.84 16 13 H 0.07 3.66 5.24 -2.39 -0.01 3.65 16 14 C -0.54 -27.81 8.68 25.60 0.22 -27.59 16 15 H 0.07 3.88 7.68 -2.91 -0.02 3.86 16 16 C 0.07 3.62 5.47 84.65 0.46 4.08 16 17 N -0.90 -49.45 13.96 21.45 0.30 -49.15 16 18 Si 0.92 42.31 27.18 68.60 1.86 44.17 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.26 -12.27 6.24 99.48 0.62 -11.65 16 22 C 0.44 19.96 2.83 71.98 0.20 20.17 16 23 F -0.19 -8.12 16.64 44.97 0.75 -7.37 16 24 F -0.19 -8.59 17.12 44.97 0.77 -7.82 16 25 F -0.19 -8.55 15.37 44.97 0.69 -7.86 16 26 C 0.13 3.27 6.45 86.51 0.56 3.83 16 27 C -0.15 -3.16 5.70 30.81 0.18 -2.98 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.87 7.61 -2.39 -0.02 0.85 16 32 H 0.06 0.69 7.96 -2.39 -0.02 0.67 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 1.24 7.62 -2.39 -0.02 1.22 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.99 5.56 -2.39 -0.01 1.98 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.40 14.96 6.05 -92.71 -0.56 14.40 16 41 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 2.18 7.03 -2.39 -0.02 2.16 16 44 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.09 1.59 7.95 -2.38 -0.02 1.57 16 Total: -1.00 -65.38 369.51 3.88 -61.50 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.37 Total: 20.96 kcal Atomic # 6 Polarization: 33.14 SS G_CDS: 5.31 Total: 38.45 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -4.38 Total: -102.76 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -1.49 Total: -39.27 kcal Atomic # 9 Polarization: -25.26 SS G_CDS: 2.21 Total: -23.05 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.86 Total: 44.17 kcal Total: -65.38 3.88 -61.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.764 kcal (2) G-P(sol) polarization free energy of solvation -65.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds