Wall clock time and date at job start Tue Mar 31 2020 21:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47273 * 2 1 4 4 O 1.42903 * 109.46811 * 119.99817 * 2 1 3 5 5 C 1.42897 * 114.00096 * 153.50557 * 4 2 1 6 6 C 1.53036 * 109.46078 * 153.47848 * 5 4 2 7 7 C 1.53194 * 109.31503 * 181.38618 * 6 5 4 8 8 N 1.46926 * 108.77540 * 305.36718 * 7 6 5 9 9 C 1.34773 * 120.62877 * 233.58293 * 8 7 6 10 10 O 1.21585 * 120.00441 * 5.15459 * 9 8 7 11 11 N 1.34779 * 119.99743 * 185.14838 * 9 8 7 12 12 C 1.46504 * 119.99797 * 185.03154 * 11 9 8 13 13 H 1.09006 * 109.47173 * 34.99956 * 12 11 9 14 14 C 1.50703 * 109.47268 * 155.00260 * 12 11 9 15 15 H 1.08006 * 119.99653 * 5.61695 * 14 12 11 16 16 C 1.37880 * 120.00212 * 185.62100 * 14 12 11 17 17 N 1.31511 * 119.99736 * 20.46262 * 16 14 12 18 18 Si 1.86799 * 119.99874 * 200.46798 * 16 14 12 19 19 H 1.48499 * 109.46826 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.46909 * 299.99970 * 18 16 14 21 21 H 1.48505 * 109.47181 * 59.99813 * 18 16 14 22 22 C 1.52998 * 109.47147 * 275.00131 * 12 11 9 23 23 F 1.39903 * 109.47190 * 294.60796 * 22 12 11 24 24 F 1.39904 * 109.47247 * 54.60482 * 22 12 11 25 25 F 1.39899 * 109.47376 * 174.60472 * 22 12 11 26 26 C 1.46927 * 118.73898 * 53.85658 * 8 7 6 27 27 C 1.53041 * 109.46207 * 273.54836 * 5 4 2 28 28 H 1.08997 * 109.47663 * 184.86808 * 1 2 3 29 29 H 1.08998 * 109.47079 * 304.87412 * 1 2 3 30 30 H 1.09006 * 109.46681 * 64.87019 * 1 2 3 31 31 H 1.09000 * 109.47226 * 239.99464 * 2 1 3 32 32 H 1.08997 * 109.46806 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46810 * 299.99663 * 3 2 1 34 34 H 1.08998 * 109.46758 * 59.99263 * 3 2 1 35 35 H 1.09000 * 109.46008 * 33.50951 * 5 4 2 36 36 H 1.08997 * 109.49943 * 61.43435 * 6 5 4 37 37 H 1.08997 * 109.52677 * 301.35577 * 6 5 4 38 38 H 1.09001 * 109.58632 * 185.57615 * 7 6 5 39 39 H 1.08998 * 109.70035 * 65.22212 * 7 6 5 40 40 H 0.96999 * 120.00232 * 5.03157 * 11 9 8 41 41 H 0.97000 * 119.99993 * 355.47251 * 17 16 14 42 42 H 1.09001 * 109.58451 * 65.92563 * 26 8 7 43 43 H 1.08997 * 109.58804 * 186.35210 * 26 8 7 44 44 H 1.08998 * 109.49536 * 298.56641 * 27 5 4 45 45 H 1.08998 * 109.49774 * 58.62497 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.3015 -1.2573 1.0131 6 6 3.9846 -1.3496 2.3794 7 6 5.3860 -1.9437 2.2061 8 7 5.2716 -3.2274 1.5007 9 6 5.8154 -4.3465 2.0187 10 8 6.3255 -4.3200 3.1221 11 7 5.7938 -5.4949 1.3137 12 6 6.2847 -6.7354 1.9191 13 1 6.0438 -6.7411 2.9822 14 6 5.6288 -7.9153 1.2491 15 1 4.9877 -7.7627 0.3934 16 6 5.8472 -9.1895 1.7285 17 7 6.2711 -9.3646 2.9610 18 14 5.5410 -10.6669 0.6271 19 1 5.8490 -11.9131 1.3738 20 1 4.1179 -10.6819 0.2034 21 1 6.4135 -10.5801 -0.5715 22 6 7.8014 -6.8252 1.7394 23 9 8.1037 -6.9418 0.3784 24 9 8.4011 -5.6702 2.2530 25 9 8.2865 -7.9455 2.4225 26 6 4.5583 -3.2669 0.2168 27 6 3.1614 -2.6591 0.4151 28 1 -0.3634 -1.0239 0.0872 29 1 -0.3633 0.5876 0.8431 30 1 -0.3633 0.4365 -0.9305 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.9025 -0.6373 0.3478 36 1 3.3970 -1.9897 3.0374 37 1 4.0630 -0.3538 2.8156 38 1 5.8387 -2.1035 3.1847 39 1 6.0052 -1.2609 1.6242 40 1 5.4531 -5.5002 0.4055 41 1 6.4929 -8.5972 3.5113 42 1 5.1093 -2.6889 -0.5252 43 1 4.4647 -4.3000 -0.1177 44 1 2.5815 -3.2868 1.0916 45 1 2.6533 -2.5950 -0.5471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932914224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:53 Heat of formation + Delta-G solvation = -235.152090 kcal Electronic energy + Delta-G solvation = -31433.936001 eV Core-core repulsion = 26650.398426 eV Total energy + Delta-G solvation = -4783.537575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.72983 -46.25538 -46.20846 -40.22955 -38.89146 -36.67963 -34.92414 -33.42480 -32.70961 -31.14560 -31.02169 -28.00684 -27.55004 -24.71635 -24.44903 -23.51396 -21.97043 -21.35093 -20.86887 -19.39979 -18.52767 -17.39233 -17.24100 -17.00843 -16.92151 -16.37014 -15.69239 -15.28286 -15.05466 -14.96164 -14.32789 -14.06002 -13.93649 -13.73257 -13.43148 -13.30139 -13.19961 -12.99199 -12.90340 -12.69729 -12.57996 -12.54745 -12.42910 -12.40685 -12.28790 -12.20199 -12.01092 -11.93376 -11.42898 -11.30503 -11.13103 -11.01016 -10.97447 -10.79830 -10.56151 -10.21178 -9.73056 -9.58130 -9.47597 -8.64935 -8.44944 -8.25643 -6.74535 -4.51152 2.91708 3.30501 3.34381 3.37499 3.54260 3.64047 4.16281 4.29378 4.33625 4.52888 4.56926 4.69389 4.74921 4.86776 4.88451 4.93916 4.98109 5.14555 5.17484 5.25991 5.34981 5.42913 5.47673 5.50388 5.53531 5.59439 5.62983 5.67533 5.69854 5.74856 5.84889 5.89303 5.91683 5.98969 6.15775 6.52663 6.69492 7.04851 7.08501 7.17762 7.47274 8.07657 8.40155 8.48795 9.04730 9.21329 10.62413 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.003035 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.405197 B = 9224.371479 C =10161.576185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 C -0.176 4.176 4 O -0.375 6.375 5 C 0.093 3.907 6 C -0.129 4.129 7 C 0.134 3.866 8 N -0.635 5.635 9 C 0.704 3.296 10 O -0.582 6.582 11 N -0.720 5.720 12 C 0.252 3.748 13 H 0.078 0.922 14 C -0.638 4.638 15 H 0.072 0.928 16 C 0.039 3.961 17 N -0.857 5.857 18 Si 1.072 2.928 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.281 1.281 22 C 0.414 3.586 23 F -0.196 7.196 24 F -0.203 7.203 25 F -0.179 7.179 26 C 0.115 3.885 27 C -0.156 4.156 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.396 0.604 41 H 0.279 0.721 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 17.488 -8.285 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.295 6.295 5 C 0.036 3.964 6 C -0.167 4.167 7 C 0.011 3.989 8 N -0.374 5.374 9 C 0.405 3.595 10 O -0.459 6.459 11 N -0.375 5.375 12 C 0.145 3.855 13 H 0.095 0.905 14 C -0.674 4.674 15 H 0.090 0.910 16 C -0.173 4.173 17 N -0.487 5.487 18 Si 0.898 3.102 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.207 1.207 22 C 0.358 3.642 23 F -0.178 7.178 24 F -0.185 7.185 25 F -0.160 7.160 26 C -0.009 4.009 27 C -0.195 4.195 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.232 0.768 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.497 15.815 -7.263 18.949 hybrid contribution 0.297 1.772 -0.836 1.981 sum -7.200 17.586 -8.098 20.657 Atomic orbital electron populations 1.21845 0.93598 1.02934 1.02230 1.22082 0.95035 0.92211 0.88532 1.22333 1.01529 0.97002 1.02501 1.87991 1.33564 1.71746 1.36201 1.22065 0.84228 0.92772 0.97364 1.21989 0.96216 1.02113 0.96394 1.21357 0.95427 0.83062 0.99093 1.47254 1.59055 1.07904 1.23196 1.15972 0.79001 0.80242 0.84268 1.90903 1.50954 1.84149 1.19888 1.45258 1.67359 1.07132 1.17722 1.19605 0.83990 0.83337 0.98603 0.90497 1.21658 1.35495 0.90741 1.19502 0.90995 1.25993 0.93822 1.00935 0.96565 1.70742 1.36538 1.36231 1.05149 0.83495 0.76604 0.75002 0.75055 1.20357 1.21034 1.20730 1.23093 0.95736 0.72492 0.72918 1.93018 1.94844 1.95825 1.34093 1.93104 1.86929 1.51302 1.87186 1.93138 1.90007 1.53125 1.79775 1.21634 0.91643 1.01974 0.85696 1.22527 0.97485 0.97444 1.02015 0.91811 0.91912 0.91429 0.92299 0.92510 0.91790 0.91804 0.92209 0.90470 0.90249 0.88158 0.92019 0.76829 0.90886 0.91547 0.89630 0.90275 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.56 37.16 0.36 -0.72 16 2 C 0.08 0.65 3.13 -26.73 -0.08 0.56 16 3 C -0.18 -1.23 9.45 37.16 0.35 -0.88 16 4 O -0.38 -4.05 9.65 -35.23 -0.34 -4.39 16 5 C 0.09 0.95 2.36 -26.69 -0.06 0.89 16 6 C -0.13 -1.43 5.73 -26.61 -0.15 -1.59 16 7 C 0.13 1.73 6.44 -3.71 -0.02 1.70 16 8 N -0.63 -9.65 2.97 -178.23 -0.53 -10.18 16 9 C 0.70 14.27 7.80 -86.92 -0.68 13.59 16 10 O -0.58 -13.95 14.16 5.29 0.07 -13.87 16 11 N -0.72 -14.97 4.89 -59.81 -0.29 -15.26 16 12 C 0.25 6.26 1.91 -69.08 -0.13 6.12 16 13 H 0.08 2.13 6.69 -51.93 -0.35 1.78 16 14 C -0.64 -16.42 8.21 -34.44 -0.28 -16.71 16 15 H 0.07 1.77 7.80 -52.48 -0.41 1.36 16 16 C 0.04 1.05 4.73 -17.82 -0.08 0.96 16 17 N -0.86 -24.44 12.45 55.43 0.69 -23.75 16 18 Si 1.07 23.51 29.95 -169.99 -5.09 18.42 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 C 0.41 10.46 2.82 37.16 0.10 10.56 16 23 F -0.20 -4.78 16.87 2.25 0.04 -4.74 16 24 F -0.20 -5.10 15.34 2.25 0.03 -5.07 16 25 F -0.18 -4.81 14.13 2.25 0.03 -4.78 16 26 C 0.11 1.34 6.38 -3.49 -0.02 1.31 16 27 C -0.16 -1.64 5.64 -26.39 -0.15 -1.79 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.44 7.31 -51.93 -0.38 0.06 16 32 H 0.06 0.40 7.62 -51.93 -0.40 0.00 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.54 7.32 -51.93 -0.38 0.16 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.10 1.49 7.00 -51.93 -0.36 1.12 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.40 7.16 6.11 -40.82 -0.25 6.91 16 41 H 0.28 8.12 6.00 -40.82 -0.24 7.88 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.02 5.73 -51.93 -0.30 0.72 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.07 0.64 7.60 -51.93 -0.39 0.25 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -31.39 366.49 -7.20 -38.59 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.48 Total: 5.48 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -0.86 Total: 14.03 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.13 Total: -49.19 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.27 Total: -18.26 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 0.10 Total: -14.58 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.09 Total: 18.42 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.39 -7.20 -38.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.562 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds