Wall clock time and date at job start Tue Mar 31 2020 21:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47273 * 2 1 4 4 O 1.42903 * 109.46811 * 119.99817 * 2 1 3 5 5 C 1.42897 * 114.00096 * 153.50557 * 4 2 1 6 6 C 1.53036 * 109.46078 * 153.47848 * 5 4 2 7 7 C 1.53194 * 109.31503 * 181.38618 * 6 5 4 8 8 N 1.46926 * 108.77540 * 305.36718 * 7 6 5 9 9 C 1.34773 * 120.62877 * 233.58293 * 8 7 6 10 10 O 1.21585 * 120.00441 * 5.15459 * 9 8 7 11 11 N 1.34779 * 119.99743 * 185.14838 * 9 8 7 12 12 C 1.46504 * 119.99797 * 185.03154 * 11 9 8 13 13 H 1.09006 * 109.47173 * 34.99956 * 12 11 9 14 14 C 1.50703 * 109.47268 * 155.00260 * 12 11 9 15 15 H 1.08006 * 119.99653 * 5.61695 * 14 12 11 16 16 C 1.37880 * 120.00212 * 185.62100 * 14 12 11 17 17 N 1.31511 * 119.99736 * 20.46262 * 16 14 12 18 18 Si 1.86799 * 119.99874 * 200.46798 * 16 14 12 19 19 H 1.48499 * 109.46826 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.46909 * 299.99970 * 18 16 14 21 21 H 1.48505 * 109.47181 * 59.99813 * 18 16 14 22 22 C 1.52998 * 109.47147 * 275.00131 * 12 11 9 23 23 F 1.39903 * 109.47190 * 294.60796 * 22 12 11 24 24 F 1.39904 * 109.47247 * 54.60482 * 22 12 11 25 25 F 1.39899 * 109.47376 * 174.60472 * 22 12 11 26 26 C 1.46927 * 118.73898 * 53.85658 * 8 7 6 27 27 C 1.53041 * 109.46207 * 273.54836 * 5 4 2 28 28 H 1.08997 * 109.47663 * 184.86808 * 1 2 3 29 29 H 1.08998 * 109.47079 * 304.87412 * 1 2 3 30 30 H 1.09006 * 109.46681 * 64.87019 * 1 2 3 31 31 H 1.09000 * 109.47226 * 239.99464 * 2 1 3 32 32 H 1.08997 * 109.46806 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46810 * 299.99663 * 3 2 1 34 34 H 1.08998 * 109.46758 * 59.99263 * 3 2 1 35 35 H 1.09000 * 109.46008 * 33.50951 * 5 4 2 36 36 H 1.08997 * 109.49943 * 61.43435 * 6 5 4 37 37 H 1.08997 * 109.52677 * 301.35577 * 6 5 4 38 38 H 1.09001 * 109.58632 * 185.57615 * 7 6 5 39 39 H 1.08998 * 109.70035 * 65.22212 * 7 6 5 40 40 H 0.96999 * 120.00232 * 5.03157 * 11 9 8 41 41 H 0.97000 * 119.99993 * 355.47251 * 17 16 14 42 42 H 1.09001 * 109.58451 * 65.92563 * 26 8 7 43 43 H 1.08997 * 109.58804 * 186.35210 * 26 8 7 44 44 H 1.08998 * 109.49536 * 298.56641 * 27 5 4 45 45 H 1.08998 * 109.49774 * 58.62497 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.3015 -1.2573 1.0131 6 6 3.9846 -1.3496 2.3794 7 6 5.3860 -1.9437 2.2061 8 7 5.2716 -3.2274 1.5007 9 6 5.8154 -4.3465 2.0187 10 8 6.3255 -4.3200 3.1221 11 7 5.7938 -5.4949 1.3137 12 6 6.2847 -6.7354 1.9191 13 1 6.0438 -6.7411 2.9822 14 6 5.6288 -7.9153 1.2491 15 1 4.9877 -7.7627 0.3934 16 6 5.8472 -9.1895 1.7285 17 7 6.2711 -9.3646 2.9610 18 14 5.5410 -10.6669 0.6271 19 1 5.8490 -11.9131 1.3738 20 1 4.1179 -10.6819 0.2034 21 1 6.4135 -10.5801 -0.5715 22 6 7.8014 -6.8252 1.7394 23 9 8.1037 -6.9418 0.3784 24 9 8.4011 -5.6702 2.2530 25 9 8.2865 -7.9455 2.4225 26 6 4.5583 -3.2669 0.2168 27 6 3.1614 -2.6591 0.4151 28 1 -0.3634 -1.0239 0.0872 29 1 -0.3633 0.5876 0.8431 30 1 -0.3633 0.4365 -0.9305 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.9025 -0.6373 0.3478 36 1 3.3970 -1.9897 3.0374 37 1 4.0630 -0.3538 2.8156 38 1 5.8387 -2.1035 3.1847 39 1 6.0052 -1.2609 1.6242 40 1 5.4531 -5.5002 0.4055 41 1 6.4929 -8.5972 3.5113 42 1 5.1093 -2.6889 -0.5252 43 1 4.4647 -4.3000 -0.1177 44 1 2.5815 -3.2868 1.0916 45 1 2.6533 -2.5950 -0.5471 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932914224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:52 Heat of formation + Delta-G solvation = -254.643728 kcal Electronic energy + Delta-G solvation = -31434.781222 eV Core-core repulsion = 26650.398426 eV Total energy + Delta-G solvation = -4784.382796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.78721 -48.31170 -48.26964 -41.54529 -39.89120 -37.82888 -36.75393 -34.79313 -34.01619 -32.24798 -31.98762 -29.79447 -28.09171 -26.51098 -25.85357 -24.52348 -23.67870 -22.23316 -21.92872 -20.87654 -19.99257 -19.26180 -19.06713 -18.95528 -18.18696 -17.88637 -17.10457 -16.40162 -16.03683 -15.87714 -15.70472 -15.60110 -15.26311 -15.21853 -14.93360 -14.89498 -14.75343 -14.62085 -14.55048 -14.47070 -14.34186 -14.20979 -13.83867 -13.46191 -13.27364 -13.06528 -12.98377 -12.91960 -12.86350 -12.60555 -12.53197 -12.32084 -11.93135 -11.90881 -11.72295 -11.41400 -11.34316 -11.27484 -10.48344 -10.40911 -10.32055 -9.62228 -8.84997 -6.62341 1.49952 1.58058 1.64194 1.84597 1.94297 2.25638 2.49640 2.67372 2.84286 2.91950 3.44122 3.59697 3.65858 3.71993 3.76736 3.97889 4.02181 4.09797 4.18272 4.25716 4.33199 4.33692 4.46421 4.53959 4.58109 4.74706 4.77808 4.80298 4.90132 4.93395 4.98295 4.99993 5.09158 5.23232 5.29337 5.30606 5.33472 5.37644 5.55083 5.86864 6.03258 6.29027 6.39412 6.91365 7.16538 7.50041 8.50481 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.003035 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.405197 B = 9224.371479 C =10161.576185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 C -0.173 4.173 4 O -0.395 6.395 5 C 0.097 3.903 6 C -0.121 4.121 7 C 0.131 3.869 8 N -0.626 5.626 9 C 0.696 3.304 10 O -0.627 6.627 11 N -0.715 5.715 12 C 0.258 3.742 13 H 0.040 0.960 14 C -0.640 4.640 15 H 0.086 0.914 16 C -0.007 4.007 17 N -0.885 5.885 18 Si 1.117 2.883 19 H -0.286 1.286 20 H -0.259 1.259 21 H -0.267 1.267 22 C 0.415 3.585 23 F -0.188 7.188 24 F -0.203 7.203 25 F -0.191 7.191 26 C 0.109 3.891 27 C -0.149 4.149 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.409 0.591 41 H 0.262 0.738 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 18.898 -11.343 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.315 6.315 5 C 0.040 3.960 6 C -0.160 4.160 7 C 0.009 3.991 8 N -0.364 5.364 9 C 0.398 3.602 10 O -0.508 6.508 11 N -0.371 5.371 12 C 0.150 3.850 13 H 0.058 0.942 14 C -0.676 4.676 15 H 0.104 0.896 16 C -0.213 4.213 17 N -0.516 5.516 18 Si 0.936 3.064 19 H -0.211 1.211 20 H -0.183 1.183 21 H -0.192 1.192 22 C 0.358 3.642 23 F -0.170 7.170 24 F -0.185 7.185 25 F -0.172 7.172 26 C -0.013 4.013 27 C -0.188 4.188 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.248 0.752 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.525 17.297 -10.374 21.897 hybrid contribution 0.565 1.468 0.113 1.577 sum -7.960 18.765 -10.261 22.821 Atomic orbital electron populations 1.21868 0.93222 1.02423 1.03068 1.22315 0.95439 0.92798 0.88037 1.22310 1.01606 0.96215 1.02942 1.87979 1.33695 1.72086 1.37785 1.22012 0.84514 0.92869 0.96650 1.21891 0.94761 1.02205 0.97107 1.21532 0.96931 0.82407 0.98248 1.47350 1.57806 1.06961 1.24290 1.16194 0.79110 0.81131 0.83782 1.90869 1.53036 1.85011 1.21870 1.45017 1.67527 1.06250 1.18336 1.19203 0.83890 0.85094 0.96851 0.94207 1.21953 1.35260 0.90911 1.19475 0.89567 1.27453 0.92883 1.04181 0.96742 1.70867 1.39016 1.35388 1.06357 0.82961 0.78201 0.71528 0.73693 1.21134 1.18298 1.19237 1.23070 0.95868 0.72131 0.73091 1.93022 1.94807 1.95782 1.33348 1.93101 1.86926 1.51198 1.87256 1.93114 1.90175 1.53805 1.80135 1.21942 0.92348 1.02661 0.84382 1.22467 0.96398 0.97146 1.02758 0.92744 0.92524 0.89423 0.91083 0.92325 0.90170 0.92595 0.89871 0.93134 0.88468 0.90775 0.88919 0.75177 0.92694 0.88249 0.89971 0.92852 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.56 71.98 0.69 -1.15 16 2 C 0.07 0.97 3.13 30.60 0.10 1.07 16 3 C -0.17 -1.92 9.45 71.98 0.68 -1.24 16 4 O -0.40 -7.72 9.65 -148.98 -1.44 -9.16 16 5 C 0.10 1.72 2.36 30.62 0.07 1.80 16 6 C -0.12 -2.56 5.73 30.67 0.18 -2.38 16 7 C 0.13 3.24 6.44 86.36 0.56 3.80 16 8 N -0.63 -18.43 2.97 -836.07 -2.48 -20.91 16 9 C 0.70 28.53 7.80 179.06 1.40 29.93 16 10 O -0.63 -31.21 14.16 -3.98 -0.06 -31.26 16 11 N -0.72 -29.73 4.89 -461.40 -2.26 -31.98 16 12 C 0.26 13.08 1.91 44.24 0.08 13.16 16 13 H 0.04 2.34 6.69 -2.38 -0.02 2.32 16 14 C -0.64 -32.79 8.21 25.60 0.21 -32.58 16 15 H 0.09 4.09 7.80 -2.91 -0.02 4.07 16 16 C -0.01 -0.35 4.73 84.66 0.40 0.05 16 17 N -0.89 -51.64 12.45 21.45 0.27 -51.37 16 18 Si 1.12 46.21 29.95 68.60 2.05 48.27 16 19 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 21 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 22 C 0.41 21.21 2.82 71.98 0.20 21.41 16 23 F -0.19 -9.01 16.87 44.97 0.76 -8.25 16 24 F -0.20 -10.35 15.34 44.97 0.69 -9.66 16 25 F -0.19 -10.50 14.13 44.97 0.64 -9.87 16 26 C 0.11 2.26 6.38 86.51 0.55 2.81 16 27 C -0.15 -2.78 5.64 30.82 0.17 -2.60 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.80 7.31 -2.39 -0.02 0.78 16 32 H 0.06 0.63 7.62 -2.39 -0.02 0.61 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 1.13 7.32 -2.39 -0.02 1.11 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 2.25 7.00 -2.39 -0.02 2.23 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.41 14.35 6.11 -92.71 -0.57 13.79 16 41 H 0.26 15.95 6.00 -92.71 -0.56 15.39 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.77 5.73 -2.39 -0.01 1.76 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.10 1.37 7.60 -2.39 -0.02 1.36 16 Total: -1.00 -69.86 366.49 4.13 -65.73 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.66 Total: 24.39 kcal Atomic # 6 Polarization: 28.78 SS G_CDS: 5.29 Total: 34.07 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -4.47 Total: -104.27 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -1.49 Total: -40.42 kcal Atomic # 9 Polarization: -29.86 SS G_CDS: 2.08 Total: -27.78 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.05 Total: 48.27 kcal Total: -69.86 4.13 -65.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.913 kcal (2) G-P(sol) polarization free energy of solvation -69.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds