Wall clock time and date at job start Tue Mar 31 2020 21:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.58554 * 2 1 4 4 C 1.53190 * 109.58868 * 239.57040 * 2 1 3 5 5 C 1.53037 * 109.31563 * 185.57835 * 4 2 1 6 6 H 1.09003 * 109.45963 * 301.34887 * 5 4 2 7 7 N 1.46495 * 109.46307 * 181.37139 * 5 4 2 8 8 C 1.34777 * 120.00113 * 155.00016 * 7 5 4 9 9 O 1.21278 * 119.99736 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00146 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.47162 * 180.02562 * 10 8 7 12 12 C 1.38232 * 119.98415 * 264.72415 * 11 10 8 13 13 C 1.38189 * 120.04702 * 179.76755 * 12 11 10 14 14 C 1.38491 * 120.02842 * 0.51043 * 13 12 11 15 15 F 1.35096 * 120.01848 * 179.76728 * 14 13 12 16 16 C 1.38402 * 119.96896 * 359.74734 * 14 13 12 17 17 C 1.38441 * 119.95576 * 359.97438 * 16 14 13 18 18 F 1.35096 * 120.01514 * 180.02562 * 17 16 14 19 19 C 1.53045 * 109.53563 * 61.36325 * 5 4 2 20 20 C 1.53622 * 109.24433 * 298.51039 * 19 5 4 21 21 N 1.46930 * 108.53959 * 54.85990 * 20 19 5 22 22 C 1.36937 * 120.63201 * 126.36870 * 21 20 19 23 23 H 1.08000 * 119.99750 * 208.84929 * 22 21 20 24 24 C 1.38813 * 119.99747 * 29.12926 * 22 21 20 25 25 N 1.31620 * 120.00107 * 14.76315 * 24 22 21 26 26 Si 1.86803 * 119.99649 * 194.76823 * 24 22 21 27 27 H 1.48497 * 109.47306 * 89.99780 * 26 24 22 28 28 H 1.48503 * 109.47024 * 209.99718 * 26 24 22 29 29 H 1.48497 * 109.46954 * 329.99429 * 26 24 22 30 30 H 1.09004 * 109.46871 * 299.71914 * 1 2 3 31 31 H 1.09004 * 109.46729 * 59.71764 * 1 2 3 32 32 H 1.08993 * 109.47308 * 179.71651 * 1 2 3 33 33 H 1.09001 * 109.49706 * 305.53146 * 4 2 1 34 34 H 1.08998 * 109.49421 * 65.62826 * 4 2 1 35 35 H 0.97001 * 120.00095 * 334.99882 * 7 5 4 36 36 H 1.09003 * 109.47059 * 300.00320 * 10 8 7 37 37 H 1.09005 * 109.47208 * 59.99943 * 10 8 7 38 38 H 1.08002 * 119.97755 * 0.02562 * 12 11 10 39 39 H 1.08002 * 119.98912 * 180.25038 * 13 12 11 40 40 H 1.08004 * 120.02313 * 179.97438 * 16 14 13 41 41 H 1.08999 * 109.49613 * 58.58696 * 19 5 4 42 42 H 1.09001 * 109.49875 * 178.68400 * 19 5 4 43 43 H 1.08996 * 109.74167 * 295.12493 * 20 19 5 44 44 H 1.08997 * 109.66618 * 174.54708 * 20 19 5 45 45 H 0.97000 * 119.99976 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8495 -1.1690 6 1 4.0062 0.1460 -1.0994 7 7 4.0653 -1.5191 -2.3732 8 6 5.3295 -1.3062 -2.7889 9 8 6.0552 -0.5606 -2.1658 10 6 5.8413 -1.9945 -4.0279 11 6 7.2724 -1.5906 -4.2722 12 6 7.5589 -0.5513 -5.1375 13 6 8.8705 -0.1767 -5.3588 14 6 9.9001 -0.8490 -4.7217 15 9 11.1826 -0.4856 -4.9418 16 6 9.6147 -1.8931 -3.8592 17 6 8.3001 -2.2639 -3.6339 18 9 8.0201 -3.2825 -2.7918 19 6 3.9569 -1.6656 0.0657 20 6 3.4657 -0.9403 1.3277 21 7 2.0225 -0.6980 1.1954 22 6 1.1537 -1.1099 2.1704 23 1 0.1364 -1.3662 1.9140 24 6 1.5789 -1.1924 3.4893 25 7 2.7013 -0.6112 3.8564 26 14 0.5582 -2.1284 4.7428 27 1 0.9928 -3.5480 4.7744 28 1 0.7466 -1.5231 6.0858 29 1 -0.8762 -2.0580 4.3650 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6030 -1.7270 -1.2891 34 1 1.7661 -0.1695 -2.1365 35 1 3.4849 -2.1157 -2.8713 36 1 5.7871 -3.0747 -3.8921 37 1 5.2306 -1.7048 -4.8831 38 1 6.7568 -0.0291 -5.6379 39 1 9.0930 0.6380 -6.0319 40 1 10.4171 -2.4182 -3.3623 41 1 3.4983 -2.6528 0.0088 42 1 5.0412 -1.7695 0.1061 43 1 3.9877 0.0108 1.4324 44 1 3.6532 -1.5608 2.2039 45 1 2.9987 -0.6692 4.7779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947327869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:09 Heat of formation + Delta-G solvation = -87.112854 kcal Electronic energy + Delta-G solvation = -29181.620454 eV Core-core repulsion = 24835.271567 eV Total energy + Delta-G solvation = -4346.348887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.26544 -49.18578 -40.05355 -38.89800 -37.57371 -34.58037 -33.04555 -32.38494 -31.28462 -31.06056 -29.59707 -27.55668 -26.30671 -24.73726 -23.51346 -22.67472 -21.90106 -20.94371 -20.05286 -19.21814 -18.46748 -17.52684 -17.14602 -16.45743 -16.29047 -16.07116 -15.91910 -15.47668 -15.37614 -14.99460 -14.92288 -14.61531 -14.13811 -13.95208 -13.77468 -13.57784 -13.27998 -13.19477 -12.84916 -12.71415 -12.22017 -12.15899 -12.00518 -11.64493 -11.59707 -11.22351 -11.09354 -10.91296 -10.89051 -10.66462 -10.30434 -10.14326 -10.04390 -9.86374 -9.73168 -9.41680 -9.30767 -8.85977 -8.71176 -8.41591 -6.64022 -5.75929 -3.20540 0.64130 0.73935 2.74546 2.96397 3.37810 3.44811 3.45781 3.46362 3.60839 4.11201 4.22929 4.27501 4.49531 4.53635 4.77350 4.87682 5.08827 5.16771 5.27938 5.38031 5.42947 5.50179 5.51281 5.59619 5.64791 5.73150 5.77474 5.89885 5.99684 6.14956 6.25403 6.30857 6.41710 6.42410 6.46619 6.51195 6.64771 6.80553 6.89639 7.02950 7.09228 7.40076 7.67181 7.72700 7.83043 8.37744 8.47991 9.23373 9.86838 10.43779 11.32442 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.002395 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.106831 B =11687.817237 C =12343.958734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.026 0.974 4 C -0.133 4.133 5 C 0.151 3.849 6 H 0.081 0.919 7 N -0.724 5.724 8 C 0.511 3.489 9 O -0.532 6.532 10 C -0.104 4.104 11 C -0.106 4.106 12 C -0.050 4.050 13 C -0.163 4.163 14 C 0.127 3.873 15 F -0.133 7.133 16 C -0.191 4.191 17 C 0.147 3.853 18 F -0.126 7.126 19 C -0.147 4.147 20 C 0.175 3.825 21 N -0.588 5.588 22 C -0.251 4.251 23 H 0.071 0.929 24 C 0.002 3.998 25 N -0.903 5.903 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.395 0.605 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.020 0.980 44 H 0.091 0.909 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.180 -2.789 -21.874 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.099 0.901 7 N -0.374 5.374 8 C 0.296 3.704 9 O -0.408 6.408 10 C -0.144 4.144 11 C -0.108 4.108 12 C -0.068 4.068 13 C -0.182 4.182 14 C 0.107 3.893 15 F -0.112 7.112 16 C -0.211 4.211 17 C 0.127 3.873 18 F -0.104 7.104 19 C -0.187 4.187 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.197 4.197 25 N -0.547 5.547 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.228 0.772 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.109 0.891 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.793 -2.248 -21.199 23.060 hybrid contribution -0.436 -0.935 0.665 1.228 sum 8.358 -3.184 -20.534 22.397 Atomic orbital electron populations 1.21795 0.95780 1.01368 1.00343 1.20360 0.93055 0.93561 0.86721 0.95608 1.22369 0.93698 1.01603 0.99603 1.21049 0.94192 0.96714 0.83282 0.90129 1.46306 1.13077 1.48673 1.29345 1.20317 0.82228 0.82129 0.85757 1.90745 1.56006 1.37103 1.56939 1.20631 0.92766 1.02708 0.98300 1.19412 0.94059 0.98077 0.99222 1.20737 0.96232 0.94073 0.95756 1.21146 0.91964 1.02142 1.02914 1.17284 0.78928 0.95449 0.97595 1.91527 1.35520 1.90784 1.93344 1.20994 0.96655 1.00519 1.02922 1.17085 0.92406 0.87237 0.90541 1.91543 1.94264 1.56313 1.68327 1.22639 0.99698 0.99546 0.96815 1.20851 0.83120 0.97242 0.93932 1.44194 1.02970 1.65007 1.18950 1.19186 0.94912 1.37788 0.86165 0.91184 1.25114 0.97862 0.99690 0.97022 1.70013 1.23393 1.44420 1.16887 0.86307 0.79807 0.79719 0.81011 1.21531 1.21816 1.20474 0.91853 0.94328 0.92795 0.91807 0.92742 0.77175 0.87576 0.87301 0.83930 0.83959 0.83406 0.92692 0.92979 0.96195 0.89130 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.94 37.16 0.30 -2.15 16 2 C 0.17 3.42 3.49 -67.60 -0.24 3.18 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.15 4.84 -26.61 -0.13 -2.28 16 5 C 0.15 2.57 2.41 -67.89 -0.16 2.40 16 6 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 7 N -0.72 -9.51 5.08 -53.77 -0.27 -9.78 16 8 C 0.51 7.04 7.79 -10.99 -0.09 6.95 16 9 O -0.53 -9.81 15.70 5.56 0.09 -9.72 16 10 C -0.10 -0.95 5.60 -29.04 -0.16 -1.12 16 11 C -0.11 -1.11 4.38 -104.55 -0.46 -1.56 16 12 C -0.05 -0.43 9.67 -39.60 -0.38 -0.81 16 13 C -0.16 -1.39 10.02 -39.51 -0.40 -1.79 16 14 C 0.13 1.27 7.30 -39.43 -0.29 0.98 16 15 F -0.13 -1.38 17.27 2.25 0.04 -1.34 16 16 C -0.19 -2.01 10.01 -39.45 -0.39 -2.41 16 17 C 0.15 1.71 7.24 -39.43 -0.29 1.43 16 18 F -0.13 -1.63 16.57 2.25 0.04 -1.60 16 19 C -0.15 -2.92 5.67 -26.38 -0.15 -3.07 16 20 C 0.17 4.24 5.31 -3.48 -0.02 4.22 16 21 N -0.59 -14.30 2.98 -164.51 -0.49 -14.79 16 22 C -0.25 -6.64 8.60 -15.06 -0.13 -6.77 16 23 H 0.07 1.80 6.21 -52.49 -0.33 1.47 16 24 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 25 N -0.90 -26.24 11.13 55.49 0.62 -25.62 16 26 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.97 7.45 -51.93 -0.39 0.59 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.39 3.87 8.60 -40.82 -0.35 3.52 16 36 H 0.11 0.84 7.79 -51.93 -0.40 0.44 16 37 H 0.11 0.62 8.05 -51.93 -0.42 0.21 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -32.37 373.71 -8.80 -41.18 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.35 Total: 2.33 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.07 Total: -2.82 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.15 Total: -50.19 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.08 Total: -2.93 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.37 -8.80 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947327869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.938 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds