Wall clock time and date at job start Tue Mar 31 2020 21:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.58554 * 2 1 4 4 C 1.53190 * 109.58868 * 239.57040 * 2 1 3 5 5 C 1.53037 * 109.31563 * 185.57835 * 4 2 1 6 6 H 1.09003 * 109.45963 * 301.34887 * 5 4 2 7 7 N 1.46495 * 109.46307 * 181.37139 * 5 4 2 8 8 C 1.34777 * 120.00113 * 155.00016 * 7 5 4 9 9 O 1.21278 * 119.99736 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00146 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.47162 * 180.02562 * 10 8 7 12 12 C 1.38232 * 119.98415 * 264.72415 * 11 10 8 13 13 C 1.38189 * 120.04702 * 179.76755 * 12 11 10 14 14 C 1.38491 * 120.02842 * 0.51043 * 13 12 11 15 15 F 1.35096 * 120.01848 * 179.76728 * 14 13 12 16 16 C 1.38402 * 119.96896 * 359.74734 * 14 13 12 17 17 C 1.38441 * 119.95576 * 359.97438 * 16 14 13 18 18 F 1.35096 * 120.01514 * 180.02562 * 17 16 14 19 19 C 1.53045 * 109.53563 * 61.36325 * 5 4 2 20 20 C 1.53622 * 109.24433 * 298.51039 * 19 5 4 21 21 N 1.46930 * 108.53959 * 54.85990 * 20 19 5 22 22 C 1.36937 * 120.63201 * 126.36870 * 21 20 19 23 23 H 1.08000 * 119.99750 * 208.84929 * 22 21 20 24 24 C 1.38813 * 119.99747 * 29.12926 * 22 21 20 25 25 N 1.31620 * 120.00107 * 14.76315 * 24 22 21 26 26 Si 1.86803 * 119.99649 * 194.76823 * 24 22 21 27 27 H 1.48497 * 109.47306 * 89.99780 * 26 24 22 28 28 H 1.48503 * 109.47024 * 209.99718 * 26 24 22 29 29 H 1.48497 * 109.46954 * 329.99429 * 26 24 22 30 30 H 1.09004 * 109.46871 * 299.71914 * 1 2 3 31 31 H 1.09004 * 109.46729 * 59.71764 * 1 2 3 32 32 H 1.08993 * 109.47308 * 179.71651 * 1 2 3 33 33 H 1.09001 * 109.49706 * 305.53146 * 4 2 1 34 34 H 1.08998 * 109.49421 * 65.62826 * 4 2 1 35 35 H 0.97001 * 120.00095 * 334.99882 * 7 5 4 36 36 H 1.09003 * 109.47059 * 300.00320 * 10 8 7 37 37 H 1.09005 * 109.47208 * 59.99943 * 10 8 7 38 38 H 1.08002 * 119.97755 * 0.02562 * 12 11 10 39 39 H 1.08002 * 119.98912 * 180.25038 * 13 12 11 40 40 H 1.08004 * 120.02313 * 179.97438 * 16 14 13 41 41 H 1.08999 * 109.49613 * 58.58696 * 19 5 4 42 42 H 1.09001 * 109.49875 * 178.68400 * 19 5 4 43 43 H 1.08996 * 109.74167 * 295.12493 * 20 19 5 44 44 H 1.08997 * 109.66618 * 174.54708 * 20 19 5 45 45 H 0.97000 * 119.99976 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8495 -1.1690 6 1 4.0062 0.1460 -1.0994 7 7 4.0653 -1.5191 -2.3732 8 6 5.3295 -1.3062 -2.7889 9 8 6.0552 -0.5606 -2.1658 10 6 5.8413 -1.9945 -4.0279 11 6 7.2724 -1.5906 -4.2722 12 6 7.5589 -0.5513 -5.1375 13 6 8.8705 -0.1767 -5.3588 14 6 9.9001 -0.8490 -4.7217 15 9 11.1826 -0.4856 -4.9418 16 6 9.6147 -1.8931 -3.8592 17 6 8.3001 -2.2639 -3.6339 18 9 8.0201 -3.2825 -2.7918 19 6 3.9569 -1.6656 0.0657 20 6 3.4657 -0.9403 1.3277 21 7 2.0225 -0.6980 1.1954 22 6 1.1537 -1.1099 2.1704 23 1 0.1364 -1.3662 1.9140 24 6 1.5789 -1.1924 3.4893 25 7 2.7013 -0.6112 3.8564 26 14 0.5582 -2.1284 4.7428 27 1 0.9928 -3.5480 4.7744 28 1 0.7466 -1.5231 6.0858 29 1 -0.8762 -2.0580 4.3650 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6030 -1.7270 -1.2891 34 1 1.7661 -0.1695 -2.1365 35 1 3.4849 -2.1157 -2.8713 36 1 5.7871 -3.0747 -3.8921 37 1 5.2306 -1.7048 -4.8831 38 1 6.7568 -0.0291 -5.6379 39 1 9.0930 0.6380 -6.0319 40 1 10.4171 -2.4182 -3.3623 41 1 3.4983 -2.6528 0.0088 42 1 5.0412 -1.7695 0.1061 43 1 3.9877 0.0108 1.4324 44 1 3.6532 -1.5608 2.2039 45 1 2.9987 -0.6692 4.7779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947327869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:08 Heat of formation + Delta-G solvation = -106.699033 kcal Electronic energy + Delta-G solvation = -29182.469775 eV Core-core repulsion = 24835.271567 eV Total energy + Delta-G solvation = -4347.198207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.08170 -50.03530 -41.13817 -39.86825 -39.02847 -36.06883 -34.24721 -33.82931 -32.82631 -31.81295 -31.25957 -28.58400 -27.75728 -26.55863 -24.25052 -23.93901 -23.28983 -22.26059 -21.36804 -20.80623 -19.26387 -18.45431 -18.30060 -17.94826 -17.44961 -17.00746 -16.93260 -16.75670 -16.34650 -16.20709 -16.00612 -15.71211 -15.50527 -15.42509 -15.01007 -14.83148 -14.64887 -14.51539 -14.40503 -13.87076 -13.32555 -13.03669 -12.98382 -12.91163 -12.77615 -12.70277 -12.62258 -12.59828 -12.35644 -12.33478 -12.05723 -11.83098 -11.71051 -11.48815 -11.31225 -10.85250 -10.55284 -10.07296 -9.96639 -9.64348 -8.64782 -7.83054 -5.30106 -0.11400 0.01260 1.47332 1.48612 1.57116 1.69534 2.10980 2.50513 2.52851 2.85600 3.33080 3.36839 3.51212 3.57604 3.60084 3.86442 3.88851 4.02526 4.08632 4.12933 4.29747 4.41015 4.45100 4.54226 4.62554 4.73132 4.76161 4.79347 4.83248 4.88006 4.93794 4.97929 5.04253 5.09728 5.13647 5.17918 5.20216 5.40110 5.51038 5.57304 5.61475 5.72068 5.73355 5.75161 6.43470 6.65938 7.17368 7.36016 7.89580 8.42211 9.24017 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.002395 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.106831 B =11687.817237 C =12343.958734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.010 0.990 4 C -0.116 4.116 5 C 0.163 3.837 6 H 0.054 0.946 7 N -0.709 5.709 8 C 0.507 3.493 9 O -0.584 6.584 10 C -0.094 4.094 11 C -0.117 4.117 12 C -0.046 4.046 13 C -0.157 4.157 14 C 0.113 3.887 15 F -0.138 7.138 16 C -0.203 4.203 17 C 0.118 3.882 18 F -0.142 7.142 19 C -0.130 4.130 20 C 0.183 3.817 21 N -0.603 5.603 22 C -0.246 4.246 23 H 0.082 0.918 24 C -0.060 4.060 25 N -0.943 5.943 26 Si 0.964 3.036 27 H -0.288 1.288 28 H -0.301 1.301 29 H -0.263 1.263 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.417 0.583 36 H 0.122 0.878 37 H 0.156 0.844 38 H 0.177 0.823 39 H 0.169 0.831 40 H 0.151 0.849 41 H 0.061 0.939 42 H 0.038 0.962 43 H -0.016 1.016 44 H 0.054 0.946 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 -3.307 -25.527 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.027 0.973 4 C -0.155 4.155 5 C 0.058 3.942 6 H 0.072 0.928 7 N -0.361 5.361 8 C 0.295 3.705 9 O -0.464 6.464 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.064 4.064 13 C -0.175 4.175 14 C 0.094 3.906 15 F -0.117 7.117 16 C -0.223 4.223 17 C 0.099 3.901 18 F -0.120 7.120 19 C -0.170 4.170 20 C 0.056 3.944 21 N -0.327 5.327 22 C -0.376 4.376 23 H 0.100 0.900 24 C -0.254 4.254 25 N -0.590 5.590 26 Si 0.793 3.207 27 H -0.215 1.215 28 H -0.228 1.228 29 H -0.187 1.187 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.254 0.746 36 H 0.140 0.860 37 H 0.174 0.826 38 H 0.195 0.805 39 H 0.187 0.813 40 H 0.169 0.831 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.003 0.997 44 H 0.072 0.928 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.688 -2.798 -24.921 25.954 hybrid contribution 0.257 -0.693 1.748 1.898 sum 6.945 -3.491 -23.173 24.442 Atomic orbital electron populations 1.21714 0.93816 1.01735 1.01144 1.20676 0.94766 0.92861 0.86596 0.97278 1.22162 0.92299 1.02280 0.98751 1.20607 0.95035 0.95030 0.83576 0.92819 1.45998 1.13530 1.48605 1.27955 1.21161 0.81555 0.81248 0.86541 1.90738 1.57272 1.39552 1.58838 1.20689 0.92413 1.02977 0.97187 1.19706 0.94371 0.98427 0.99362 1.21167 0.97109 0.93158 0.94952 1.21519 0.91611 1.02079 1.02315 1.17491 0.79221 0.95799 0.98111 1.91512 1.35941 1.90818 1.93410 1.21126 0.96731 1.01047 1.03384 1.17425 0.93385 0.87887 0.91431 1.91495 1.94389 1.57093 1.69035 1.22372 0.98593 0.99640 0.96441 1.20528 0.83727 0.95248 0.94856 1.44454 1.02474 1.65743 1.20030 1.19587 0.95435 1.36067 0.86541 0.90018 1.25902 0.99145 1.01239 0.99139 1.70201 1.25470 1.46679 1.16646 0.85297 0.79173 0.78034 0.78172 1.21547 1.22848 1.18700 0.94340 0.90269 0.92553 0.90505 0.88848 0.74555 0.86040 0.82634 0.80542 0.81306 0.83097 0.92038 0.94363 0.99745 0.92792 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.94 71.98 0.57 -3.67 16 2 C 0.16 6.10 3.49 44.97 0.16 6.26 16 3 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 4 C -0.12 -3.36 4.84 30.67 0.15 -3.21 16 5 C 0.16 5.31 2.41 45.02 0.11 5.42 16 6 H 0.05 2.09 7.58 -2.39 -0.02 2.07 16 7 N -0.71 -16.51 5.08 -442.41 -2.25 -18.76 16 8 C 0.51 12.86 7.79 87.66 0.68 13.54 16 9 O -0.58 -21.38 15.70 -3.02 -0.05 -21.43 16 10 C -0.09 -1.38 5.60 29.10 0.16 -1.21 16 11 C -0.12 -2.18 4.38 -19.82 -0.09 -2.27 16 12 C -0.05 -0.64 9.67 22.26 0.22 -0.43 16 13 C -0.16 -2.30 10.02 22.32 0.22 -2.07 16 14 C 0.11 2.18 7.30 22.37 0.16 2.34 16 15 F -0.14 -2.79 17.27 44.97 0.78 -2.01 16 16 C -0.20 -4.33 10.01 22.36 0.22 -4.11 16 17 C 0.12 2.72 7.24 22.37 0.16 2.88 16 18 F -0.14 -3.73 16.57 44.97 0.74 -2.98 16 19 C -0.13 -5.26 5.67 30.82 0.17 -5.09 16 20 C 0.18 9.34 5.31 86.51 0.46 9.80 16 21 N -0.60 -29.73 2.98 -674.38 -2.01 -31.74 16 22 C -0.25 -13.10 8.60 84.03 0.72 -12.38 16 23 H 0.08 4.10 6.21 -2.91 -0.02 4.08 16 24 C -0.06 -3.36 4.96 84.86 0.42 -2.94 16 25 N -0.94 -57.49 11.13 21.65 0.24 -57.25 16 26 Si 0.96 45.11 29.58 68.60 2.03 47.14 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 28 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 29 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 30 H 0.04 1.46 7.62 -2.38 -0.02 1.44 16 31 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.06 1.85 7.45 -2.39 -0.02 1.83 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.42 6.22 8.60 -92.71 -0.80 5.42 16 36 H 0.12 1.49 7.79 -2.39 -0.02 1.47 16 37 H 0.16 0.85 8.05 -2.38 -0.02 0.83 16 38 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 41 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H 0.05 3.12 6.06 -2.39 -0.01 3.11 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -76.25 373.71 4.22 -72.03 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.22 Total: 12.13 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 4.51 Total: 2.87 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -4.02 Total: -107.75 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.43 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 1.52 Total: -5.00 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -76.25 4.22 -72.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947327869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.664 kcal (2) G-P(sol) polarization free energy of solvation -76.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds