Wall clock time and date at job start Tue Mar 31 2020 21:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.58904 * 2 1 4 4 C 1.53194 * 109.58359 * 120.27934 * 2 1 3 5 5 C 1.53043 * 109.31354 * 174.41996 * 4 2 1 6 6 H 1.08997 * 109.45628 * 58.64483 * 5 4 2 7 7 N 1.46500 * 109.45906 * 178.61547 * 5 4 2 8 8 C 1.34785 * 119.99606 * 204.72633 * 7 5 4 9 9 O 1.21272 * 119.99936 * 0.27642 * 8 7 5 10 10 C 1.50701 * 119.99406 * 180.27703 * 8 7 5 11 11 C 1.50707 * 109.46509 * 179.97438 * 10 8 7 12 12 C 1.38229 * 119.98603 * 264.72183 * 11 10 8 13 13 C 1.38186 * 120.04570 * 179.77230 * 12 11 10 14 14 C 1.38493 * 120.02588 * 0.50495 * 13 12 11 15 15 F 1.35101 * 120.01040 * 179.77152 * 14 13 12 16 16 C 1.38388 * 119.97803 * 359.75023 * 14 13 12 17 17 C 1.38443 * 119.94816 * 359.97438 * 16 14 13 18 18 F 1.35106 * 120.01163 * 180.02562 * 17 16 14 19 19 C 1.53035 * 109.53820 * 298.63634 * 5 4 2 20 20 C 1.53194 * 109.31319 * 61.36580 * 19 5 4 21 21 N 1.46925 * 109.58764 * 239.56461 * 2 1 3 22 22 C 1.36934 * 120.62874 * 6.63528 * 21 2 1 23 23 H 1.07997 * 120.00124 * 330.15572 * 22 21 2 24 24 C 1.38811 * 119.99958 * 150.16179 * 22 21 2 25 25 N 1.31623 * 120.00187 * 344.47880 * 24 22 21 26 26 Si 1.86806 * 120.00140 * 164.47879 * 24 22 21 27 27 H 1.48500 * 109.46781 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47059 * 119.99583 * 26 24 22 29 29 H 1.48493 * 109.47194 * 239.99909 * 26 24 22 30 30 H 1.08998 * 109.47226 * 299.72397 * 1 2 3 31 31 H 1.09008 * 109.46749 * 59.71842 * 1 2 3 32 32 H 1.08994 * 109.47693 * 179.71668 * 1 2 3 33 33 H 1.09000 * 109.49867 * 54.47119 * 4 2 1 34 34 H 1.09003 * 109.52580 * 294.39178 * 4 2 1 35 35 H 0.96997 * 120.00078 * 24.99822 * 7 5 4 36 36 H 1.08998 * 109.47176 * 299.99727 * 10 8 7 37 37 H 1.08995 * 109.47533 * 59.99865 * 10 8 7 38 38 H 1.07998 * 119.97112 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.98703 * 180.25626 * 13 12 11 40 40 H 1.08004 * 120.03025 * 180.02562 * 16 14 13 41 41 H 1.08994 * 109.49816 * 181.31491 * 19 5 4 42 42 H 1.08998 * 109.49772 * 301.41241 * 19 5 4 43 43 H 1.09002 * 109.58827 * 185.57956 * 20 19 5 44 44 H 1.08997 * 109.58947 * 65.14782 * 20 19 5 45 45 H 0.96999 * 120.00071 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7277 1.2464 5 6 3.5674 -0.8465 1.1714 6 1 4.0060 0.1487 1.0990 7 7 4.0650 -1.5127 2.3775 8 6 5.3310 -1.3029 2.7896 9 8 6.0566 -0.5588 2.1647 10 6 5.8448 -1.9931 4.0268 11 6 7.2777 -1.5926 4.2669 12 6 8.3055 -2.3912 3.8016 13 6 9.6198 -2.0227 4.0170 14 6 9.9086 -0.8581 4.7086 15 9 11.1936 -0.5005 4.9230 16 6 8.8804 -0.0605 5.1796 17 6 7.5640 -0.4277 4.9582 18 9 6.5592 0.3503 5.4170 19 6 3.9568 -1.6659 -0.0611 20 6 3.4651 -0.9488 -1.3224 21 7 2.0225 -0.7012 -1.1935 22 6 1.1537 -1.1155 -2.1675 23 1 0.1397 -1.3821 -1.9087 24 6 1.5765 -1.1931 -3.4873 25 7 2.6873 -0.5928 -3.8590 26 14 0.5689 -2.1494 -4.7362 27 1 -0.6262 -2.7269 -4.0702 28 1 0.1367 -1.2379 -5.8260 29 1 1.3953 -3.2442 -5.3051 30 1 -0.3633 0.5095 0.8924 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6028 -1.7236 1.2936 34 1 1.7658 -0.1645 2.1374 35 1 3.4846 -2.1079 2.8773 36 1 5.2373 -1.7023 4.8838 37 1 5.7877 -3.0730 3.8907 38 1 8.0811 -3.3016 3.2657 39 1 10.4221 -2.6452 3.6493 40 1 9.1046 0.8481 5.7187 41 1 5.0410 -1.7699 -0.1012 42 1 3.4982 -2.6529 -0.0016 43 1 3.6518 -1.5747 -2.1950 44 1 3.9903 0.0000 -1.4315 45 1 2.9825 -0.6467 -4.7814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947327870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:12 Heat of formation + Delta-G solvation = -87.613385 kcal Electronic energy + Delta-G solvation = -29142.006596 eV Core-core repulsion = 24795.636005 eV Total energy + Delta-G solvation = -4346.370592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.26712 -49.21766 -40.05819 -38.90357 -37.58506 -34.58207 -33.04861 -32.38441 -31.31834 -31.06636 -29.60775 -27.56243 -26.31964 -24.73695 -23.51897 -22.68221 -21.91518 -20.94638 -20.05671 -19.21983 -18.48161 -17.53532 -17.15191 -16.45989 -16.28707 -16.07860 -15.96982 -15.49803 -15.32237 -14.99306 -14.95273 -14.63927 -14.14158 -13.97596 -13.78837 -13.58679 -13.27281 -13.17696 -12.81601 -12.78913 -12.23955 -12.15236 -12.00435 -11.64936 -11.60267 -11.22368 -11.11777 -10.92374 -10.89843 -10.66877 -10.30442 -10.15098 -10.04900 -9.86719 -9.73985 -9.42153 -9.31274 -8.86502 -8.71591 -8.42960 -6.63680 -5.77361 -3.21761 0.63866 0.73568 2.74533 2.96140 3.36188 3.44457 3.45290 3.46285 3.59757 4.10492 4.23149 4.26604 4.48690 4.53830 4.77435 4.87450 5.09668 5.15599 5.27363 5.37893 5.42108 5.49423 5.51723 5.58594 5.64410 5.73280 5.77347 5.90425 5.99107 6.15158 6.24932 6.31282 6.41360 6.42064 6.46193 6.51126 6.63984 6.78339 6.88863 7.03002 7.09649 7.37571 7.65760 7.70497 7.82894 8.37488 8.47153 9.22350 9.85918 10.43427 11.31319 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.002371 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.607706 B =11808.379500 C =12560.071279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.026 0.974 4 C -0.133 4.133 5 C 0.151 3.849 6 H 0.081 0.919 7 N -0.724 5.724 8 C 0.511 3.489 9 O -0.532 6.532 10 C -0.104 4.104 11 C -0.106 4.106 12 C -0.049 4.049 13 C -0.162 4.162 14 C 0.127 3.873 15 F -0.133 7.133 16 C -0.192 4.192 17 C 0.145 3.855 18 F -0.128 7.128 19 C -0.146 4.146 20 C 0.175 3.825 21 N -0.587 5.587 22 C -0.251 4.251 23 H 0.070 0.930 24 C 0.002 3.998 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.395 0.605 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 -4.862 20.460 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.099 0.901 7 N -0.374 5.374 8 C 0.296 3.704 9 O -0.408 6.408 10 C -0.144 4.144 11 C -0.107 4.107 12 C -0.067 4.067 13 C -0.180 4.180 14 C 0.107 3.893 15 F -0.112 7.112 16 C -0.211 4.211 17 C 0.126 3.874 18 F -0.106 7.106 19 C -0.186 4.186 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.228 0.772 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.627 -4.248 19.848 22.465 hybrid contribution -0.595 -0.504 -0.370 0.863 sum 9.031 -4.752 19.478 21.990 Atomic orbital electron populations 1.21790 0.95766 1.01415 1.00301 1.20356 0.93076 0.93571 0.86670 0.95602 1.22374 0.93680 1.01612 0.99657 1.21047 0.94243 0.96781 0.83190 0.90138 1.46304 1.12918 1.48923 1.29257 1.20317 0.82255 0.82142 0.85704 1.90744 1.56195 1.37023 1.56816 1.20633 0.92827 1.02650 0.98300 1.19413 0.95926 0.94940 1.00435 1.20763 0.90622 0.99236 0.96087 1.21163 0.98200 0.96884 1.01797 1.17283 0.78311 0.94700 0.98972 1.91528 1.34999 1.91705 1.92940 1.20973 0.90803 1.02918 1.06430 1.17070 0.84164 0.89477 0.96710 1.91530 1.59096 1.73528 1.86466 1.22558 0.99652 0.99535 0.96851 1.20730 0.83279 0.97284 0.93806 1.44170 1.02973 1.64789 1.19150 1.19196 0.95181 1.37577 0.86098 0.91220 1.25121 0.97899 0.99586 0.97021 1.70036 1.24094 1.43800 1.16636 0.86267 0.79594 0.79606 0.81560 1.20288 1.21766 1.21653 0.94318 0.91883 0.92765 0.91814 0.92707 0.77168 0.87636 0.87229 0.83844 0.83905 0.83452 0.92956 0.92702 0.89404 0.96190 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.95 37.16 0.30 -2.16 16 2 C 0.17 3.44 3.50 -67.60 -0.24 3.20 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.17 4.84 -26.61 -0.13 -2.30 16 5 C 0.15 2.56 2.41 -67.89 -0.16 2.40 16 6 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 7 N -0.72 -9.49 5.08 -53.77 -0.27 -9.76 16 8 C 0.51 7.03 7.78 -10.98 -0.09 6.94 16 9 O -0.53 -9.79 15.70 5.56 0.09 -9.71 16 10 C -0.10 -0.95 5.60 -29.03 -0.16 -1.12 16 11 C -0.11 -1.10 4.38 -104.54 -0.46 -1.56 16 12 C -0.05 -0.44 9.67 -39.60 -0.38 -0.82 16 13 C -0.16 -1.42 10.02 -39.51 -0.40 -1.81 16 14 C 0.13 1.27 7.30 -39.43 -0.29 0.98 16 15 F -0.13 -1.37 17.27 2.25 0.04 -1.33 16 16 C -0.19 -1.97 10.01 -39.45 -0.39 -2.36 16 17 C 0.15 1.65 7.24 -39.43 -0.29 1.36 16 18 F -0.13 -1.56 16.57 2.25 0.04 -1.52 16 19 C -0.15 -2.83 5.65 -26.61 -0.15 -2.98 16 20 C 0.18 4.20 5.28 -3.71 -0.02 4.18 16 21 N -0.59 -14.23 2.99 -164.78 -0.49 -14.72 16 22 C -0.25 -6.61 8.58 -15.06 -0.13 -6.74 16 23 H 0.07 1.79 6.23 -52.49 -0.33 1.46 16 24 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 25 N -0.90 -26.07 11.23 55.49 0.62 -25.45 16 26 Si 0.90 21.40 29.58 -169.99 -5.03 16.37 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.25 7.67 -51.92 -0.40 0.85 16 32 H 0.05 0.98 7.40 -51.93 -0.38 0.60 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 3.86 8.60 -40.82 -0.35 3.51 16 36 H 0.11 0.79 7.79 -51.93 -0.40 0.39 16 37 H 0.11 0.67 8.05 -51.93 -0.42 0.26 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.09 2.35 6.15 -51.93 -0.32 2.03 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -32.19 373.83 -8.80 -40.99 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.36 Total: 2.30 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -3.07 Total: -2.80 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.14 Total: -49.93 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.19 -8.80 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947327870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.622 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds