Wall clock time and date at job start Tue Mar 31 2020 21:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.58904 * 2 1 4 4 C 1.53194 * 109.58359 * 120.27934 * 2 1 3 5 5 C 1.53043 * 109.31354 * 174.41996 * 4 2 1 6 6 H 1.08997 * 109.45628 * 58.64483 * 5 4 2 7 7 N 1.46500 * 109.45906 * 178.61547 * 5 4 2 8 8 C 1.34785 * 119.99606 * 204.72633 * 7 5 4 9 9 O 1.21272 * 119.99936 * 0.27642 * 8 7 5 10 10 C 1.50701 * 119.99406 * 180.27703 * 8 7 5 11 11 C 1.50707 * 109.46509 * 179.97438 * 10 8 7 12 12 C 1.38229 * 119.98603 * 264.72183 * 11 10 8 13 13 C 1.38186 * 120.04570 * 179.77230 * 12 11 10 14 14 C 1.38493 * 120.02588 * 0.50495 * 13 12 11 15 15 F 1.35101 * 120.01040 * 179.77152 * 14 13 12 16 16 C 1.38388 * 119.97803 * 359.75023 * 14 13 12 17 17 C 1.38443 * 119.94816 * 359.97438 * 16 14 13 18 18 F 1.35106 * 120.01163 * 180.02562 * 17 16 14 19 19 C 1.53035 * 109.53820 * 298.63634 * 5 4 2 20 20 C 1.53194 * 109.31319 * 61.36580 * 19 5 4 21 21 N 1.46925 * 109.58764 * 239.56461 * 2 1 3 22 22 C 1.36934 * 120.62874 * 6.63528 * 21 2 1 23 23 H 1.07997 * 120.00124 * 330.15572 * 22 21 2 24 24 C 1.38811 * 119.99958 * 150.16179 * 22 21 2 25 25 N 1.31623 * 120.00187 * 344.47880 * 24 22 21 26 26 Si 1.86806 * 120.00140 * 164.47879 * 24 22 21 27 27 H 1.48500 * 109.46781 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47059 * 119.99583 * 26 24 22 29 29 H 1.48493 * 109.47194 * 239.99909 * 26 24 22 30 30 H 1.08998 * 109.47226 * 299.72397 * 1 2 3 31 31 H 1.09008 * 109.46749 * 59.71842 * 1 2 3 32 32 H 1.08994 * 109.47693 * 179.71668 * 1 2 3 33 33 H 1.09000 * 109.49867 * 54.47119 * 4 2 1 34 34 H 1.09003 * 109.52580 * 294.39178 * 4 2 1 35 35 H 0.96997 * 120.00078 * 24.99822 * 7 5 4 36 36 H 1.08998 * 109.47176 * 299.99727 * 10 8 7 37 37 H 1.08995 * 109.47533 * 59.99865 * 10 8 7 38 38 H 1.07998 * 119.97112 * 0.02562 * 12 11 10 39 39 H 1.08001 * 119.98703 * 180.25626 * 13 12 11 40 40 H 1.08004 * 120.03025 * 180.02562 * 16 14 13 41 41 H 1.08994 * 109.49816 * 181.31491 * 19 5 4 42 42 H 1.08998 * 109.49772 * 301.41241 * 19 5 4 43 43 H 1.09002 * 109.58827 * 185.57956 * 20 19 5 44 44 H 1.08997 * 109.58947 * 65.14782 * 20 19 5 45 45 H 0.96999 * 120.00071 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7277 1.2464 5 6 3.5674 -0.8465 1.1714 6 1 4.0060 0.1487 1.0990 7 7 4.0650 -1.5127 2.3775 8 6 5.3310 -1.3029 2.7896 9 8 6.0566 -0.5588 2.1647 10 6 5.8448 -1.9931 4.0268 11 6 7.2777 -1.5926 4.2669 12 6 8.3055 -2.3912 3.8016 13 6 9.6198 -2.0227 4.0170 14 6 9.9086 -0.8581 4.7086 15 9 11.1936 -0.5005 4.9230 16 6 8.8804 -0.0605 5.1796 17 6 7.5640 -0.4277 4.9582 18 9 6.5592 0.3503 5.4170 19 6 3.9568 -1.6659 -0.0611 20 6 3.4651 -0.9488 -1.3224 21 7 2.0225 -0.7012 -1.1935 22 6 1.1537 -1.1155 -2.1675 23 1 0.1397 -1.3821 -1.9087 24 6 1.5765 -1.1931 -3.4873 25 7 2.6873 -0.5928 -3.8590 26 14 0.5689 -2.1494 -4.7362 27 1 -0.6262 -2.7269 -4.0702 28 1 0.1367 -1.2379 -5.8260 29 1 1.3953 -3.2442 -5.3051 30 1 -0.3633 0.5095 0.8924 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6028 -1.7236 1.2936 34 1 1.7658 -0.1645 2.1374 35 1 3.4846 -2.1079 2.8773 36 1 5.2373 -1.7023 4.8838 37 1 5.7877 -3.0730 3.8907 38 1 8.0811 -3.3016 3.2657 39 1 10.4221 -2.6452 3.6493 40 1 9.1046 0.8481 5.7187 41 1 5.0410 -1.7699 -0.1012 42 1 3.4982 -2.6529 -0.0016 43 1 3.6518 -1.5747 -2.1950 44 1 3.9903 0.0000 -1.4315 45 1 2.9825 -0.6467 -4.7814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947327870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:11 Heat of formation + Delta-G solvation = -106.839531 kcal Electronic energy + Delta-G solvation = -29142.840305 eV Core-core repulsion = 24795.636005 eV Total energy + Delta-G solvation = -4347.204300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.07097 -50.03426 -41.14179 -39.87318 -39.03317 -36.06554 -34.24392 -33.83139 -32.84706 -31.81609 -31.26226 -28.58772 -27.76892 -26.54808 -24.25253 -23.94833 -23.28713 -22.26028 -21.36356 -20.80702 -19.26574 -18.44831 -18.30760 -17.94103 -17.44232 -17.01195 -16.93184 -16.76778 -16.33951 -16.14350 -16.03145 -15.71979 -15.49516 -15.45630 -15.01230 -14.85493 -14.60317 -14.58062 -14.35045 -13.88727 -13.33007 -13.03014 -13.00847 -12.91348 -12.75511 -12.70445 -12.66477 -12.58169 -12.37252 -12.30831 -12.04300 -11.82849 -11.71007 -11.48267 -11.30697 -10.84983 -10.55553 -10.07814 -9.96166 -9.64474 -8.63449 -7.83051 -5.30105 -0.11625 0.01033 1.47255 1.49261 1.59285 1.69832 2.10383 2.50093 2.53365 2.85061 3.33372 3.36352 3.50680 3.57321 3.60153 3.86301 3.88578 4.02343 4.08296 4.12700 4.28993 4.41667 4.44969 4.54013 4.62993 4.72845 4.77762 4.78555 4.82898 4.87492 4.93524 4.96990 5.04022 5.09912 5.13237 5.18592 5.20210 5.40534 5.50101 5.56018 5.61164 5.72186 5.74394 5.74695 6.44216 6.65843 7.18034 7.35901 7.89712 8.43032 9.24463 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.002371 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.607706 B =11808.379500 C =12560.071279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.006 0.994 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.049 0.951 7 N -0.709 5.709 8 C 0.508 3.492 9 O -0.584 6.584 10 C -0.094 4.094 11 C -0.117 4.117 12 C -0.049 4.049 13 C -0.158 4.158 14 C 0.113 3.887 15 F -0.138 7.138 16 C -0.201 4.201 17 C 0.122 3.878 18 F -0.138 7.138 19 C -0.128 4.128 20 C 0.183 3.817 21 N -0.602 5.602 22 C -0.246 4.246 23 H 0.081 0.919 24 C -0.058 4.058 25 N -0.942 5.942 26 Si 0.964 3.036 27 H -0.260 1.260 28 H -0.297 1.297 29 H -0.294 1.294 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.417 0.583 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.172 0.828 39 H 0.166 0.834 40 H 0.155 0.845 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.053 0.947 44 H -0.018 1.018 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.761 -7.167 22.831 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.024 0.976 4 C -0.156 4.156 5 C 0.057 3.943 6 H 0.067 0.933 7 N -0.361 5.361 8 C 0.295 3.705 9 O -0.464 6.464 10 C -0.133 4.133 11 C -0.118 4.118 12 C -0.067 4.067 13 C -0.177 4.177 14 C 0.094 3.906 15 F -0.117 7.117 16 C -0.220 4.220 17 C 0.103 3.897 18 F -0.117 7.117 19 C -0.168 4.168 20 C 0.057 3.943 21 N -0.326 5.326 22 C -0.377 4.377 23 H 0.098 0.902 24 C -0.253 4.253 25 N -0.589 5.589 26 Si 0.792 3.208 27 H -0.184 1.184 28 H -0.225 1.225 29 H -0.221 1.221 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.255 0.745 36 H 0.145 0.855 37 H 0.168 0.832 38 H 0.189 0.811 39 H 0.184 0.816 40 H 0.172 0.828 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.000 1.000 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.301 -6.583 22.290 24.680 hybrid contribution -0.147 0.289 -1.070 1.118 sum 8.154 -6.295 21.220 23.588 Atomic orbital electron populations 1.21707 0.93852 1.01776 1.01051 1.20647 0.94749 0.92744 0.86727 0.97611 1.22167 0.92554 1.02343 0.98559 1.20603 0.94865 0.95042 0.83825 0.93314 1.45996 1.13348 1.48842 1.27896 1.21154 0.81628 0.81265 0.86441 1.90737 1.57524 1.39358 1.58770 1.20686 0.92033 1.04347 0.96206 1.19690 0.97109 0.94793 1.00257 1.21142 0.90197 0.99918 0.95467 1.21498 0.99119 0.96405 1.00671 1.17478 0.78062 0.95398 0.99668 1.91514 1.35240 1.91845 1.93067 1.21124 0.90853 1.03422 1.06639 1.17344 0.84256 0.90208 0.97939 1.91494 1.59467 1.73955 1.86774 1.22275 0.99009 0.99634 0.95858 1.20437 0.83658 0.95270 0.94984 1.44435 1.02625 1.65464 1.20121 1.19584 0.95674 1.35914 0.86492 0.90155 1.25904 0.99170 1.01110 0.99082 1.70215 1.26168 1.46001 1.16482 0.85252 0.78593 0.77877 0.79038 1.18428 1.22492 1.22131 0.90493 0.94316 0.92421 0.90230 0.89422 0.74545 0.85463 0.83222 0.81087 0.81597 0.82767 0.93662 0.91613 0.92820 0.99951 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.95 71.98 0.57 -3.73 16 2 C 0.16 6.20 3.50 44.97 0.16 6.36 16 3 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 4 C -0.12 -3.47 4.84 30.67 0.15 -3.32 16 5 C 0.16 5.29 2.41 45.02 0.11 5.40 16 6 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 7 N -0.71 -16.48 5.08 -442.41 -2.25 -18.73 16 8 C 0.51 12.84 7.78 87.66 0.68 13.52 16 9 O -0.58 -21.35 15.70 -3.01 -0.05 -21.39 16 10 C -0.09 -1.38 5.60 29.10 0.16 -1.21 16 11 C -0.12 -2.18 4.38 -19.81 -0.09 -2.27 16 12 C -0.05 -0.75 9.67 22.26 0.22 -0.53 16 13 C -0.16 -2.47 10.02 22.32 0.22 -2.24 16 14 C 0.11 2.18 7.30 22.37 0.16 2.34 16 15 F -0.14 -2.78 17.27 44.97 0.78 -2.00 16 16 C -0.20 -4.08 10.01 22.35 0.22 -3.86 16 17 C 0.12 2.67 7.24 22.37 0.16 2.83 16 18 F -0.14 -3.30 16.57 44.97 0.75 -2.55 16 19 C -0.13 -4.94 5.65 30.67 0.17 -4.77 16 20 C 0.18 9.16 5.28 86.36 0.46 9.61 16 21 N -0.60 -29.54 2.99 -675.24 -2.02 -31.55 16 22 C -0.25 -13.03 8.58 84.03 0.72 -12.31 16 23 H 0.08 4.02 6.23 -2.91 -0.02 4.00 16 24 C -0.06 -3.23 4.94 84.86 0.42 -2.81 16 25 N -0.94 -56.86 11.23 21.65 0.24 -56.62 16 26 Si 0.96 44.59 29.58 68.60 2.03 46.62 16 27 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 1.48 7.67 -2.38 -0.02 1.46 16 32 H 0.06 1.92 7.40 -2.39 -0.02 1.90 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.42 6.20 8.60 -92.71 -0.80 5.40 16 36 H 0.13 1.38 7.79 -2.39 -0.02 1.36 16 37 H 0.15 1.03 8.05 -2.39 -0.02 1.01 16 38 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 40 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.05 3.03 6.15 -2.39 -0.01 3.01 16 44 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -74.79 373.83 4.21 -70.58 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.22 Total: 12.64 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 4.50 Total: 3.01 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -4.02 Total: -106.90 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 1.52 Total: -4.56 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -74.79 4.21 -70.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947327870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.260 kcal (2) G-P(sol) polarization free energy of solvation -74.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds