Wall clock time and date at job start Tue Mar 31 2020 21:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.58809 * 2 1 4 4 C 1.53198 * 109.70099 * 239.64662 * 2 1 3 5 5 C 1.53039 * 109.31288 * 294.77639 * 4 2 1 6 6 H 1.08998 * 109.45679 * 58.64297 * 5 4 2 7 7 N 1.46499 * 109.45767 * 178.61566 * 5 4 2 8 8 C 1.34774 * 119.99792 * 205.00038 * 7 5 4 9 9 O 1.21280 * 120.00053 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99785 * 180.02562 * 8 7 5 11 11 C 1.50711 * 109.46732 * 180.02562 * 10 8 7 12 12 C 1.38226 * 119.98728 * 100.00587 * 11 10 8 13 13 C 1.38188 * 120.05187 * 180.02562 * 12 11 10 14 14 C 1.38497 * 120.02140 * 359.97438 * 13 12 11 15 15 F 1.35098 * 120.00966 * 180.02562 * 14 13 12 16 16 C 1.38392 * 119.97756 * 359.97438 * 14 13 12 17 17 C 1.38448 * 119.98574 * 279.72222 * 11 10 8 18 18 F 1.35099 * 120.01346 * 0.02562 * 17 11 10 19 19 C 1.53040 * 109.53940 * 298.63569 * 5 4 2 20 20 C 1.52761 * 109.38080 * 61.24260 * 19 5 4 21 21 N 1.46927 * 109.58801 * 120.28869 * 2 1 3 22 22 C 1.36939 * 120.62849 * 246.29819 * 21 2 1 23 23 H 1.08002 * 120.00144 * 331.91145 * 22 21 2 24 24 C 1.38812 * 119.99948 * 151.91151 * 22 21 2 25 25 N 1.31621 * 119.99722 * 343.21501 * 24 22 21 26 26 Si 1.86797 * 120.00136 * 163.21536 * 24 22 21 27 27 H 1.48497 * 109.47049 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47033 * 119.99925 * 26 24 22 29 29 H 1.48503 * 109.47061 * 240.00183 * 26 24 22 30 30 H 1.09000 * 109.47104 * 299.71688 * 1 2 3 31 31 H 1.08998 * 109.47134 * 59.71052 * 1 2 3 32 32 H 1.08996 * 109.47446 * 179.71213 * 1 2 3 33 33 H 1.08999 * 109.49832 * 54.73514 * 4 2 1 34 34 H 1.09003 * 109.49543 * 174.79168 * 4 2 1 35 35 H 0.96997 * 120.00123 * 24.99951 * 7 5 4 36 36 H 1.08994 * 109.47324 * 299.99590 * 10 8 7 37 37 H 1.09001 * 109.47061 * 60.00511 * 10 8 7 38 38 H 1.08006 * 119.97582 * 359.97438 * 12 11 10 39 39 H 1.07996 * 119.98342 * 179.97438 * 13 12 11 40 40 H 1.07993 * 120.02656 * 180.02562 * 16 14 13 41 41 H 1.09002 * 109.49940 * 181.31386 * 19 5 4 42 42 H 1.09000 * 109.49827 * 301.41690 * 19 5 4 43 43 H 1.09003 * 109.51073 * 185.70525 * 20 19 5 44 44 H 1.09001 * 109.43570 * 65.42518 * 20 19 5 45 45 H 0.97006 * 119.99968 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2446 5 6 1.6473 -2.2043 -1.1692 6 1 0.5624 -2.2838 -1.0994 7 7 2.1110 -2.8975 -2.3737 8 6 1.4864 -4.0171 -2.7894 9 8 0.5402 -4.4505 -2.1666 10 6 1.9638 -4.7305 -4.0281 11 6 1.1023 -5.9426 -4.2731 12 6 0.0889 -5.8916 -5.2117 13 6 -0.7021 -7.0021 -5.4370 14 6 -0.4799 -8.1677 -4.7228 15 9 -1.2530 -9.2533 -4.9437 16 6 0.5351 -8.2202 -3.7835 17 6 1.3301 -7.1085 -3.5621 18 9 2.3240 -7.1597 -2.6485 19 6 2.2857 -2.8449 0.0654 20 6 1.7768 -2.1412 1.3221 21 7 2.0226 -0.6981 1.1953 22 6 2.7027 -0.0179 2.1699 23 1 3.2720 0.8640 1.9158 24 6 2.6605 -0.4619 3.4844 25 7 1.7301 -1.3128 3.8620 26 14 3.9241 0.1484 4.7174 27 1 4.8553 1.0907 4.0466 28 1 3.2322 0.8445 5.8318 29 1 4.6897 -1.0055 5.2538 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0052 33 1 1.6106 -0.2791 -2.1367 34 1 3.1325 -0.6471 -1.2896 35 1 2.8674 -2.5506 -2.8720 36 1 1.8961 -4.0583 -4.8833 37 1 2.9994 -5.0419 -3.8916 38 1 -0.0854 -4.9829 -5.7689 39 1 -1.4939 -6.9609 -6.1704 40 1 0.7094 -9.1288 -3.2264 41 1 2.0200 -3.9013 0.1057 42 1 3.3695 -2.7437 0.0084 43 1 2.3050 -2.5265 2.1943 44 1 0.7073 -2.3215 1.4309 45 1 1.7003 -1.6228 4.7807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947327871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:15 Heat of formation + Delta-G solvation = -87.416681 kcal Electronic energy + Delta-G solvation = -29354.504397 eV Core-core repulsion = 25008.142335 eV Total energy + Delta-G solvation = -4346.362062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.26400 -49.16240 -40.06702 -38.93578 -37.66211 -34.47942 -33.04726 -32.46065 -31.10636 -30.80787 -29.63097 -27.65048 -26.72790 -24.30019 -23.50823 -22.71380 -21.91569 -21.50524 -20.24392 -18.52943 -18.36298 -17.52535 -17.23415 -16.70458 -16.33284 -16.06820 -15.92200 -15.47276 -15.39223 -14.95913 -14.68380 -14.60417 -14.15779 -13.89666 -13.73832 -13.67660 -13.21528 -13.02952 -12.76221 -12.53374 -12.27949 -12.17006 -12.13119 -11.96233 -11.64234 -11.40955 -11.06940 -10.92250 -10.80145 -10.61077 -10.34819 -10.17040 -10.04358 -9.77921 -9.71710 -9.39624 -9.29971 -8.85807 -8.71625 -8.40742 -6.67818 -5.77918 -3.21051 0.64357 0.74227 2.74978 2.96770 3.36987 3.45198 3.46072 3.47106 3.61562 4.12000 4.22948 4.27598 4.48838 4.53743 4.77280 4.87923 5.09011 5.16788 5.29668 5.38745 5.40928 5.50415 5.51203 5.60656 5.65259 5.73237 5.79090 5.89665 6.02243 6.06954 6.25755 6.31770 6.43650 6.45695 6.47964 6.58371 6.66449 6.80920 6.88936 6.96010 7.16152 7.40033 7.66957 7.72303 7.80736 8.38162 8.46350 9.21903 9.85346 10.42123 11.30329 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.002444 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.009833 B =11451.564124 C =11961.948674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.065 0.935 4 C -0.132 4.132 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.724 5.724 8 C 0.511 3.489 9 O -0.532 6.532 10 C -0.104 4.104 11 C -0.107 4.107 12 C -0.051 4.051 13 C -0.164 4.164 14 C 0.127 3.873 15 F -0.133 7.133 16 C -0.192 4.192 17 C 0.150 3.850 18 F -0.125 7.125 19 C -0.147 4.147 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.253 4.253 23 H 0.066 0.934 24 C 0.003 3.997 25 N -0.899 5.899 26 Si 0.901 3.099 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.289 1.289 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 -9.113 -21.971 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.083 0.917 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.374 5.374 8 C 0.296 3.704 9 O -0.408 6.408 10 C -0.144 4.144 11 C -0.109 4.109 12 C -0.070 4.070 13 C -0.183 4.183 14 C 0.108 3.892 15 F -0.112 7.112 16 C -0.211 4.211 17 C 0.130 3.870 18 F -0.104 7.104 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.306 5.306 22 C -0.382 4.382 23 H 0.083 0.917 24 C -0.196 4.196 25 N -0.543 5.543 26 Si 0.731 3.269 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.216 1.216 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.166 0.834 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.039 0.961 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.187 -9.522 -21.285 23.348 hybrid contribution 0.987 0.110 0.685 1.207 sum -0.200 -9.412 -20.599 22.649 Atomic orbital electron populations 1.22300 0.98709 1.01090 1.00056 1.20436 0.91779 0.95102 0.86522 0.91684 1.22294 1.01143 0.94168 0.99562 1.21106 0.99775 0.91274 0.83189 0.89702 1.46308 1.34735 1.27039 1.29341 1.20314 0.83351 0.81035 0.85742 1.90744 1.27875 1.65236 1.56948 1.20633 1.00440 0.94963 0.98335 1.19420 0.99328 0.93713 0.98409 1.20740 0.92253 0.98111 0.95853 1.21141 1.02572 0.92132 1.02411 1.17285 0.90984 0.84057 0.96920 1.91527 1.73245 1.52782 1.93631 1.20999 0.97712 1.00305 1.02097 1.17086 0.87417 0.93718 0.88777 1.91549 1.58123 1.96824 1.63873 1.22491 1.00140 0.99195 0.96862 1.20641 0.97765 0.82894 0.93916 1.44152 1.64004 1.03310 1.19182 1.19191 1.21988 1.10416 0.86641 0.91657 1.25065 0.97701 0.99940 0.96848 1.70047 1.31872 1.35595 1.16811 0.86253 0.81242 0.78073 0.81360 1.20290 1.21761 1.21617 0.92599 0.94537 0.93235 0.92635 0.91893 0.77201 0.87332 0.87559 0.83915 0.83970 0.83410 0.92930 0.92735 0.89392 0.96148 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.04 37.16 0.34 -2.75 16 2 C 0.17 3.38 3.28 -67.60 -0.22 3.16 16 3 H 0.06 1.29 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.12 5.03 -26.61 -0.13 -2.25 16 5 C 0.15 2.53 2.21 -67.89 -0.15 2.38 16 6 H 0.08 1.63 5.94 -51.93 -0.31 1.32 16 7 N -0.72 -9.49 5.08 -53.77 -0.27 -9.76 16 8 C 0.51 7.03 7.78 -10.98 -0.09 6.94 16 9 O -0.53 -9.80 15.62 5.56 0.09 -9.71 16 10 C -0.10 -0.95 5.56 -29.03 -0.16 -1.11 16 11 C -0.11 -1.11 4.43 -104.54 -0.46 -1.58 16 12 C -0.05 -0.43 9.66 -39.60 -0.38 -0.82 16 13 C -0.16 -1.38 10.03 -39.50 -0.40 -1.78 16 14 C 0.13 1.27 7.30 -39.43 -0.29 0.98 16 15 F -0.13 -1.38 17.27 2.25 0.04 -1.34 16 16 C -0.19 -2.03 10.01 -39.45 -0.39 -2.43 16 17 C 0.15 1.77 7.14 -39.43 -0.28 1.48 16 18 F -0.13 -1.66 16.66 2.25 0.04 -1.63 16 19 C -0.15 -2.92 5.64 -26.83 -0.15 -3.07 16 20 C 0.17 4.20 4.86 -3.93 -0.02 4.18 16 21 N -0.58 -14.18 2.70 -165.03 -0.45 -14.62 16 22 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 23 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 24 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 25 N -0.90 -26.08 11.20 55.49 0.62 -25.46 16 26 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.99 5.76 -51.93 -0.30 0.69 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.39 3.85 8.60 -40.82 -0.35 3.50 16 36 H 0.11 0.62 8.00 -51.93 -0.42 0.20 16 37 H 0.11 0.83 7.94 -51.93 -0.41 0.42 16 38 H 0.14 0.80 8.04 -52.48 -0.42 0.38 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 44 H 0.02 0.53 7.52 -51.93 -0.39 0.14 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -32.44 372.84 -8.62 -41.06 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.26 Total: 2.88 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -3.02 Total: -3.57 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.10 Total: -49.85 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.08 Total: -2.96 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.44 -8.62 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947327871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.353 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds