Wall clock time and date at job start Tue Mar 31 2020 21:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.58809 * 2 1 4 4 C 1.53198 * 109.70099 * 239.64662 * 2 1 3 5 5 C 1.53039 * 109.31288 * 294.77639 * 4 2 1 6 6 H 1.08998 * 109.45679 * 58.64297 * 5 4 2 7 7 N 1.46499 * 109.45767 * 178.61566 * 5 4 2 8 8 C 1.34774 * 119.99792 * 205.00038 * 7 5 4 9 9 O 1.21280 * 120.00053 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99785 * 180.02562 * 8 7 5 11 11 C 1.50711 * 109.46732 * 180.02562 * 10 8 7 12 12 C 1.38226 * 119.98728 * 100.00587 * 11 10 8 13 13 C 1.38188 * 120.05187 * 180.02562 * 12 11 10 14 14 C 1.38497 * 120.02140 * 359.97438 * 13 12 11 15 15 F 1.35098 * 120.00966 * 180.02562 * 14 13 12 16 16 C 1.38392 * 119.97756 * 359.97438 * 14 13 12 17 17 C 1.38448 * 119.98574 * 279.72222 * 11 10 8 18 18 F 1.35099 * 120.01346 * 0.02562 * 17 11 10 19 19 C 1.53040 * 109.53940 * 298.63569 * 5 4 2 20 20 C 1.52761 * 109.38080 * 61.24260 * 19 5 4 21 21 N 1.46927 * 109.58801 * 120.28869 * 2 1 3 22 22 C 1.36939 * 120.62849 * 246.29819 * 21 2 1 23 23 H 1.08002 * 120.00144 * 331.91145 * 22 21 2 24 24 C 1.38812 * 119.99948 * 151.91151 * 22 21 2 25 25 N 1.31621 * 119.99722 * 343.21501 * 24 22 21 26 26 Si 1.86797 * 120.00136 * 163.21536 * 24 22 21 27 27 H 1.48497 * 109.47049 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47033 * 119.99925 * 26 24 22 29 29 H 1.48503 * 109.47061 * 240.00183 * 26 24 22 30 30 H 1.09000 * 109.47104 * 299.71688 * 1 2 3 31 31 H 1.08998 * 109.47134 * 59.71052 * 1 2 3 32 32 H 1.08996 * 109.47446 * 179.71213 * 1 2 3 33 33 H 1.08999 * 109.49832 * 54.73514 * 4 2 1 34 34 H 1.09003 * 109.49543 * 174.79168 * 4 2 1 35 35 H 0.96997 * 120.00123 * 24.99951 * 7 5 4 36 36 H 1.08994 * 109.47324 * 299.99590 * 10 8 7 37 37 H 1.09001 * 109.47061 * 60.00511 * 10 8 7 38 38 H 1.08006 * 119.97582 * 359.97438 * 12 11 10 39 39 H 1.07996 * 119.98342 * 179.97438 * 13 12 11 40 40 H 1.07993 * 120.02656 * 180.02562 * 16 14 13 41 41 H 1.09002 * 109.49940 * 181.31386 * 19 5 4 42 42 H 1.09000 * 109.49827 * 301.41690 * 19 5 4 43 43 H 1.09003 * 109.51073 * 185.70525 * 20 19 5 44 44 H 1.09001 * 109.43570 * 65.42518 * 20 19 5 45 45 H 0.97006 * 119.99968 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2446 5 6 1.6473 -2.2043 -1.1692 6 1 0.5624 -2.2838 -1.0994 7 7 2.1110 -2.8975 -2.3737 8 6 1.4864 -4.0171 -2.7894 9 8 0.5402 -4.4505 -2.1666 10 6 1.9638 -4.7305 -4.0281 11 6 1.1023 -5.9426 -4.2731 12 6 0.0889 -5.8916 -5.2117 13 6 -0.7021 -7.0021 -5.4370 14 6 -0.4799 -8.1677 -4.7228 15 9 -1.2530 -9.2533 -4.9437 16 6 0.5351 -8.2202 -3.7835 17 6 1.3301 -7.1085 -3.5621 18 9 2.3240 -7.1597 -2.6485 19 6 2.2857 -2.8449 0.0654 20 6 1.7768 -2.1412 1.3221 21 7 2.0226 -0.6981 1.1953 22 6 2.7027 -0.0179 2.1699 23 1 3.2720 0.8640 1.9158 24 6 2.6605 -0.4619 3.4844 25 7 1.7301 -1.3128 3.8620 26 14 3.9241 0.1484 4.7174 27 1 4.8553 1.0907 4.0466 28 1 3.2322 0.8445 5.8318 29 1 4.6897 -1.0055 5.2538 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0052 33 1 1.6106 -0.2791 -2.1367 34 1 3.1325 -0.6471 -1.2896 35 1 2.8674 -2.5506 -2.8720 36 1 1.8961 -4.0583 -4.8833 37 1 2.9994 -5.0419 -3.8916 38 1 -0.0854 -4.9829 -5.7689 39 1 -1.4939 -6.9609 -6.1704 40 1 0.7094 -9.1288 -3.2264 41 1 2.0200 -3.9013 0.1057 42 1 3.3695 -2.7437 0.0084 43 1 2.3050 -2.5265 2.1943 44 1 0.7073 -2.3215 1.4309 45 1 1.7003 -1.6228 4.7807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947327871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:14 Heat of formation + Delta-G solvation = -106.949153 kcal Electronic energy + Delta-G solvation = -29355.351389 eV Core-core repulsion = 25008.142335 eV Total energy + Delta-G solvation = -4347.209053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.07035 -50.03077 -41.15911 -39.91836 -39.06230 -35.98078 -34.33097 -33.76370 -32.47014 -31.80761 -31.30605 -28.88543 -27.97585 -26.13651 -24.23944 -23.94333 -23.54857 -22.72626 -21.37290 -20.05320 -19.26049 -18.83078 -18.29438 -17.91643 -17.53325 -16.93856 -16.87126 -16.64482 -16.34742 -16.24426 -16.02560 -15.57006 -15.51536 -15.42311 -14.99444 -14.75895 -14.58203 -14.36026 -14.16095 -13.91111 -13.85754 -13.16021 -13.03284 -12.95838 -12.85869 -12.73051 -12.66769 -12.54882 -12.33776 -12.26236 -12.03164 -11.97754 -11.75371 -11.47396 -11.13826 -10.83649 -10.56339 -10.06569 -9.94192 -9.63607 -8.67756 -7.85577 -5.31057 -0.10607 0.01985 1.45969 1.48118 1.58274 1.71025 2.12738 2.51493 2.51981 2.86612 3.30388 3.38115 3.51947 3.58169 3.62428 3.83813 3.89344 4.04095 4.10797 4.14147 4.32196 4.45550 4.46660 4.53440 4.55081 4.72192 4.78122 4.80459 4.85314 4.86007 4.91864 4.96833 5.04919 5.11276 5.16767 5.18014 5.20807 5.35387 5.45039 5.52189 5.63566 5.68918 5.75696 5.76625 6.41329 6.67378 7.15989 7.37485 7.88342 8.40537 9.21140 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.002444 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.009833 B =11451.564124 C =11961.948674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.071 0.929 4 C -0.116 4.116 5 C 0.162 3.838 6 H 0.062 0.938 7 N -0.710 5.710 8 C 0.507 3.493 9 O -0.584 6.584 10 C -0.094 4.094 11 C -0.118 4.118 12 C -0.046 4.046 13 C -0.157 4.157 14 C 0.113 3.887 15 F -0.139 7.139 16 C -0.205 4.205 17 C 0.119 3.881 18 F -0.143 7.143 19 C -0.132 4.132 20 C 0.186 3.814 21 N -0.599 5.599 22 C -0.255 4.255 23 H 0.073 0.927 24 C -0.055 4.055 25 N -0.937 5.937 26 Si 0.965 3.035 27 H -0.261 1.261 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.417 0.583 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.180 0.820 39 H 0.170 0.830 40 H 0.150 0.850 41 H 0.037 0.963 42 H 0.059 0.941 43 H 0.049 0.951 44 H -0.013 1.013 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 -7.457 -25.730 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.089 0.911 4 C -0.155 4.155 5 C 0.057 3.943 6 H 0.080 0.920 7 N -0.362 5.362 8 C 0.295 3.705 9 O -0.464 6.464 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.064 4.064 13 C -0.175 4.175 14 C 0.094 3.906 15 F -0.117 7.117 16 C -0.224 4.224 17 C 0.100 3.900 18 F -0.121 7.121 19 C -0.172 4.172 20 C 0.059 3.941 21 N -0.322 5.322 22 C -0.385 4.385 23 H 0.091 0.909 24 C -0.250 4.250 25 N -0.584 5.584 26 Si 0.794 3.206 27 H -0.185 1.185 28 H -0.223 1.223 29 H -0.222 1.222 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.254 0.746 36 H 0.174 0.826 37 H 0.140 0.860 38 H 0.197 0.803 39 H 0.188 0.812 40 H 0.167 0.833 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.005 0.995 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.212 -7.839 -25.114 26.310 hybrid contribution 0.619 -0.419 1.808 1.956 sum 0.406 -8.258 -23.306 24.729 Atomic orbital electron populations 1.22181 0.98266 1.00170 1.00565 1.20740 0.92156 0.95585 0.86343 0.91125 1.22116 1.01909 0.92713 0.98804 1.20664 0.98131 0.92140 0.83349 0.92033 1.46013 1.35339 1.26836 1.27993 1.21159 0.82338 0.80513 0.86538 1.90738 1.30366 1.66443 1.58838 1.20698 1.00613 0.94715 0.97252 1.19722 1.00143 0.93477 0.98579 1.21192 0.90827 0.99250 0.95092 1.21526 1.02771 0.91251 1.01965 1.17499 0.91027 0.84701 0.97412 1.91511 1.73319 1.53198 1.93685 1.21122 0.98170 1.00472 1.02679 1.17449 0.87946 0.95056 0.89580 1.91496 1.58911 1.96992 1.64732 1.22244 1.00305 0.97999 0.96689 1.20285 0.95276 0.83842 0.94656 1.44363 1.64357 1.03350 1.20113 1.19575 1.21540 1.10158 0.87228 0.90904 1.25835 0.99543 1.00775 0.98824 1.70221 1.33907 1.37541 1.16692 0.85238 0.79049 0.77427 0.78930 1.18534 1.22258 1.22205 0.95474 0.90477 0.94901 0.88646 0.90758 0.74617 0.82619 0.86008 0.80266 0.81222 0.83267 0.94386 0.92220 0.93253 0.99474 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.69 9.04 71.98 0.65 -5.04 16 2 C 0.16 6.06 3.28 44.98 0.15 6.21 16 3 H 0.07 2.62 7.93 -2.39 -0.02 2.61 16 4 C -0.12 -3.33 5.03 30.67 0.15 -3.18 16 5 C 0.16 5.22 2.21 45.02 0.10 5.32 16 6 H 0.06 2.34 5.94 -2.39 -0.01 2.32 16 7 N -0.71 -16.41 5.08 -442.41 -2.25 -18.65 16 8 C 0.51 12.77 7.78 87.66 0.68 13.46 16 9 O -0.58 -21.27 15.62 -3.03 -0.05 -21.32 16 10 C -0.09 -1.36 5.56 29.11 0.16 -1.20 16 11 C -0.12 -2.17 4.43 -19.81 -0.09 -2.26 16 12 C -0.05 -0.61 9.66 22.26 0.22 -0.39 16 13 C -0.16 -2.23 10.03 22.32 0.22 -2.00 16 14 C 0.11 2.17 7.30 22.37 0.16 2.33 16 15 F -0.14 -2.79 17.27 44.97 0.78 -2.02 16 16 C -0.20 -4.43 10.01 22.36 0.22 -4.20 16 17 C 0.12 2.79 7.14 22.37 0.16 2.94 16 18 F -0.14 -3.88 16.66 44.97 0.75 -3.14 16 19 C -0.13 -5.32 5.64 30.53 0.17 -5.15 16 20 C 0.19 9.39 4.86 86.22 0.42 9.81 16 21 N -0.60 -29.38 2.70 -676.03 -1.83 -31.21 16 22 C -0.25 -13.75 9.58 84.03 0.81 -12.95 16 23 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 24 C -0.05 -3.08 4.92 84.86 0.42 -2.66 16 25 N -0.94 -56.91 11.20 21.65 0.24 -56.67 16 26 Si 0.96 45.16 29.59 68.60 2.03 47.19 16 27 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 28 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 29 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.03 1.31 5.76 -2.39 -0.01 1.30 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.42 6.16 8.60 -92.71 -0.80 5.37 16 36 H 0.16 0.80 8.00 -2.39 -0.02 0.78 16 37 H 0.12 1.46 7.94 -2.39 -0.02 1.44 16 38 H 0.18 1.02 8.04 -2.91 -0.02 1.00 16 39 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.05 2.85 6.07 -2.39 -0.01 2.83 16 44 H -0.01 -0.72 7.52 -2.39 -0.02 -0.73 16 45 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -76.37 372.84 4.51 -71.86 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.23 Total: 12.93 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 4.61 Total: 1.03 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -3.83 Total: -106.53 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.53 Total: -5.15 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.37 4.51 -71.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947327871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.091 kcal (2) G-P(sol) polarization free energy of solvation -76.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds