Wall clock time and date at job start Tue Mar 31 2020 21:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.08999 * 109.46845 * 301.22059 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21276 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99555 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47129 * 180.02562 * 10 8 7 12 12 C 1.38232 * 119.98722 * 100.00127 * 11 10 8 13 13 C 1.38191 * 120.05134 * 179.97438 * 12 11 10 14 14 C 1.38493 * 120.02450 * 0.02562 * 13 12 11 15 15 F 1.35094 * 120.01250 * 179.97438 * 14 13 12 16 16 C 1.38400 * 119.97272 * 359.97438 * 14 13 12 17 17 C 1.38443 * 119.95279 * 359.72674 * 16 14 13 18 18 F 1.35095 * 120.01380 * 180.26835 * 17 16 14 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07995 * 120.00274 * 209.19622 * 22 21 20 24 24 C 1.38814 * 119.99924 * 29.19414 * 22 21 20 25 25 N 1.31623 * 119.99750 * 24.22945 * 24 22 21 26 26 Si 1.86799 * 120.00119 * 204.23697 * 24 22 21 27 27 H 1.48497 * 109.46863 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47014 * 299.99863 * 26 24 22 29 29 H 1.48505 * 109.47110 * 59.99717 * 26 24 22 30 30 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 31 31 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 33 33 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 34 34 H 1.09000 * 109.38856 * 185.34959 * 4 2 1 35 35 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 36 36 H 1.09002 * 109.47608 * 300.00323 * 10 8 7 37 37 H 1.09000 * 109.47224 * 60.00576 * 10 8 7 38 38 H 1.08002 * 119.97445 * 359.97438 * 12 11 10 39 39 H 1.07995 * 119.98618 * 180.02562 * 13 12 11 40 40 H 1.08005 * 120.01963 * 179.97438 * 16 14 13 41 41 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 42 42 H 1.08998 * 109.52068 * 58.60136 * 19 5 4 43 43 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 44 44 H 1.09001 * 109.58413 * 174.42141 * 20 19 5 45 45 H 0.96998 * 120.00078 * 5.78560 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2811 1.0996 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5320 -4.4440 2.1730 10 6 1.9498 -4.7178 4.0397 11 6 1.0887 -5.9299 4.2853 12 6 1.5384 -7.1834 3.9148 13 6 0.7501 -8.2959 4.1398 14 6 -0.4918 -8.1560 4.7364 15 9 -1.2625 -9.2436 4.9559 16 6 -0.9431 -6.9014 5.1078 17 6 -0.1499 -5.7883 4.8875 18 9 -0.5869 -4.5638 5.2545 19 6 2.2843 -2.8431 -0.0582 20 6 1.7740 -2.1421 -1.3211 21 7 2.0226 -0.6996 -1.1945 22 6 2.7052 -0.0210 -2.1685 23 1 3.2868 0.8520 -1.9119 24 6 2.6496 -0.4553 -3.4858 25 7 1.6267 -1.1728 -3.8995 26 14 4.0267 -0.0216 -4.6712 27 1 3.7312 -0.6007 -6.0063 28 1 4.1354 1.4550 -4.7846 29 1 5.3083 -0.5749 -4.1647 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5084 -0.8931 33 1 1.5987 -0.2724 2.1349 34 1 3.1240 -0.6413 1.2942 35 1 2.8564 -2.5412 2.8798 36 1 2.9859 -5.0294 3.9072 37 1 1.8796 -4.0430 4.8929 38 1 2.5066 -7.2934 3.4490 39 1 1.1027 -9.2747 3.8503 40 1 -1.9117 -6.7914 5.5728 41 1 2.0200 -3.8999 -0.0966 42 1 3.3678 -2.7410 0.0020 43 1 0.7043 -2.3203 -1.4310 44 1 2.3024 -2.5288 -2.1925 45 1 0.8724 -1.3274 -3.3095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947327872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:18 Heat of formation + Delta-G solvation = -90.600351 kcal Electronic energy + Delta-G solvation = -29367.176178 eV Core-core repulsion = 25020.676062 eV Total energy + Delta-G solvation = -4346.500116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.29454 -49.23393 -40.14043 -39.00860 -37.82866 -34.65785 -33.11650 -32.63573 -31.15228 -30.92303 -29.47695 -27.65444 -26.81793 -24.22349 -23.54700 -22.74823 -21.90685 -21.63621 -20.32338 -18.60686 -18.46140 -17.61484 -17.53992 -16.88003 -16.46871 -16.12151 -16.03607 -15.52478 -15.39058 -15.08482 -14.67488 -14.40669 -14.20156 -14.11293 -13.71344 -13.57261 -13.41209 -13.24093 -13.00540 -12.71640 -12.31849 -12.19587 -12.13345 -12.03372 -11.70449 -11.65423 -11.22969 -10.86580 -10.75820 -10.58848 -10.40700 -10.21549 -9.98626 -9.88063 -9.71118 -9.37422 -9.25004 -8.90027 -8.77886 -8.36206 -6.89047 -6.05966 -3.24368 0.60747 0.70682 2.68269 2.92429 3.38478 3.49147 3.52091 3.57327 3.70428 4.07779 4.19617 4.23200 4.50924 4.57991 4.73700 4.81215 5.05931 5.11403 5.16983 5.24261 5.40475 5.46391 5.47552 5.48449 5.61463 5.69894 5.70175 5.86560 5.88658 5.93700 6.14574 6.20477 6.26208 6.33210 6.43330 6.45361 6.51017 6.61258 6.76452 6.83972 6.96374 7.09089 7.22923 7.60872 8.01857 8.30732 8.58731 9.12476 9.84836 10.30078 11.22503 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.002423 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.124505 B =11551.056254 C =12067.549035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.067 0.933 4 C -0.132 4.132 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.724 5.724 8 C 0.511 3.489 9 O -0.532 6.532 10 C -0.104 4.104 11 C -0.107 4.107 12 C -0.050 4.050 13 C -0.162 4.162 14 C 0.127 3.873 15 F -0.133 7.133 16 C -0.192 4.192 17 C 0.148 3.852 18 F -0.127 7.127 19 C -0.141 4.141 20 C 0.154 3.846 21 N -0.592 5.592 22 C -0.350 4.350 23 H 0.055 0.945 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.064 2.936 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.019 0.981 44 H 0.079 0.921 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 -10.584 21.079 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.085 0.915 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.374 5.374 8 C 0.296 3.704 9 O -0.408 6.408 10 C -0.143 4.143 11 C -0.109 4.109 12 C -0.069 4.069 13 C -0.181 4.181 14 C 0.108 3.892 15 F -0.111 7.111 16 C -0.211 4.211 17 C 0.128 3.872 18 F -0.106 7.106 19 C -0.182 4.182 20 C 0.028 3.972 21 N -0.314 5.314 22 C -0.479 4.479 23 H 0.073 0.927 24 C -0.225 4.225 25 N -0.554 5.554 26 Si 0.894 3.106 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.037 0.963 44 H 0.098 0.902 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.080 -11.096 19.049 22.071 hybrid contribution -0.515 0.474 1.965 2.086 sum 0.565 -10.622 21.014 23.553 Atomic orbital electron populations 1.22335 0.98814 1.01002 1.00287 1.20354 0.91613 0.95273 0.86392 0.91509 1.22214 1.01271 0.94108 0.99599 1.21069 0.99766 0.91373 0.83101 0.89714 1.46279 1.34990 1.27136 1.29023 1.20332 0.83252 0.80986 0.85802 1.90742 1.27830 1.65187 1.57037 1.20626 1.00415 0.95192 0.98111 1.19411 0.94470 0.95640 1.01351 1.20769 0.99959 0.90074 0.96058 1.21162 0.93589 1.00859 1.02510 1.17286 0.89912 0.82570 0.99442 1.91528 1.74540 1.52494 1.92582 1.20984 1.02433 0.90780 1.06940 1.17064 0.92579 0.79917 0.97596 1.91530 1.89410 1.40606 1.89012 1.22439 1.00335 0.99021 0.96360 1.20891 0.97260 0.84045 0.95004 1.44196 1.64589 1.02528 1.20108 1.19934 1.25395 1.14087 0.88505 0.92713 1.25861 1.01430 0.99613 0.95639 1.70772 1.05572 1.41045 1.38019 0.83533 0.75240 0.75602 0.76191 1.21127 1.22010 1.22112 0.93310 0.94176 0.92742 0.92441 0.91813 0.77100 0.87210 0.87587 0.83831 0.83889 0.83437 0.92773 0.92344 0.96256 0.90235 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.02 37.16 0.34 -2.80 16 2 C 0.17 3.44 3.27 -67.82 -0.22 3.22 16 3 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 4 C -0.13 -2.14 4.99 -26.84 -0.13 -2.28 16 5 C 0.15 2.51 2.21 -67.88 -0.15 2.36 16 6 H 0.08 1.62 5.93 -51.93 -0.31 1.31 16 7 N -0.72 -9.36 5.08 -53.76 -0.27 -9.63 16 8 C 0.51 6.93 7.78 -10.99 -0.09 6.85 16 9 O -0.53 -9.66 15.62 5.56 0.09 -9.57 16 10 C -0.10 -0.93 5.56 -29.04 -0.16 -1.09 16 11 C -0.11 -1.10 4.43 -104.55 -0.46 -1.56 16 12 C -0.05 -0.43 9.66 -39.60 -0.38 -0.82 16 13 C -0.16 -1.39 10.03 -39.50 -0.40 -1.78 16 14 C 0.13 1.26 7.30 -39.43 -0.29 0.97 16 15 F -0.13 -1.36 17.27 2.25 0.04 -1.32 16 16 C -0.19 -1.96 10.01 -39.45 -0.39 -2.36 16 17 C 0.15 1.67 7.14 -39.43 -0.28 1.39 16 18 F -0.13 -1.57 16.66 2.25 0.04 -1.53 16 19 C -0.14 -2.71 5.65 -26.61 -0.15 -2.86 16 20 C 0.15 3.61 4.29 -3.72 -0.02 3.60 16 21 N -0.59 -14.28 2.55 -165.03 -0.42 -14.70 16 22 C -0.35 -9.52 9.48 -15.06 -0.14 -9.66 16 23 H 0.06 1.49 7.94 -52.49 -0.42 1.08 16 24 C -0.02 -0.64 4.69 -17.43 -0.08 -0.72 16 25 N -0.91 -27.26 12.45 55.49 0.69 -26.56 16 26 Si 1.06 24.96 29.98 -169.99 -5.10 19.86 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 30 H 0.05 0.96 5.74 -51.93 -0.30 0.66 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.40 3.81 8.60 -40.82 -0.35 3.46 16 36 H 0.11 0.65 8.00 -51.93 -0.42 0.24 16 37 H 0.11 0.77 7.94 -51.93 -0.41 0.36 16 38 H 0.14 0.88 8.04 -52.49 -0.42 0.45 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.48 7.23 -51.93 -0.38 0.10 16 44 H 0.08 2.10 6.39 -51.93 -0.33 1.77 16 45 H 0.27 8.14 6.71 -40.82 -0.27 7.87 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -32.94 371.83 -8.54 -41.48 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.19 Total: 3.92 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -3.01 Total: -7.55 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.00 Total: -50.89 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.85 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.10 Total: 19.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.94 -8.54 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947327872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.122 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds