Wall clock time and date at job start Tue Mar 31 2020 21:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.08999 * 109.46845 * 301.22059 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21276 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99555 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47129 * 180.02562 * 10 8 7 12 12 C 1.38232 * 119.98722 * 100.00127 * 11 10 8 13 13 C 1.38191 * 120.05134 * 179.97438 * 12 11 10 14 14 C 1.38493 * 120.02450 * 0.02562 * 13 12 11 15 15 F 1.35094 * 120.01250 * 179.97438 * 14 13 12 16 16 C 1.38400 * 119.97272 * 359.97438 * 14 13 12 17 17 C 1.38443 * 119.95279 * 359.72674 * 16 14 13 18 18 F 1.35095 * 120.01380 * 180.26835 * 17 16 14 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07995 * 120.00274 * 209.19622 * 22 21 20 24 24 C 1.38814 * 119.99924 * 29.19414 * 22 21 20 25 25 N 1.31623 * 119.99750 * 24.22945 * 24 22 21 26 26 Si 1.86799 * 120.00119 * 204.23697 * 24 22 21 27 27 H 1.48497 * 109.46863 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47014 * 299.99863 * 26 24 22 29 29 H 1.48505 * 109.47110 * 59.99717 * 26 24 22 30 30 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 31 31 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 33 33 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 34 34 H 1.09000 * 109.38856 * 185.34959 * 4 2 1 35 35 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 36 36 H 1.09002 * 109.47608 * 300.00323 * 10 8 7 37 37 H 1.09000 * 109.47224 * 60.00576 * 10 8 7 38 38 H 1.08002 * 119.97445 * 359.97438 * 12 11 10 39 39 H 1.07995 * 119.98618 * 180.02562 * 13 12 11 40 40 H 1.08005 * 120.01963 * 179.97438 * 16 14 13 41 41 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 42 42 H 1.08998 * 109.52068 * 58.60136 * 19 5 4 43 43 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 44 44 H 1.09001 * 109.58413 * 174.42141 * 20 19 5 45 45 H 0.96998 * 120.00078 * 5.78560 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2811 1.0996 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5320 -4.4440 2.1730 10 6 1.9498 -4.7178 4.0397 11 6 1.0887 -5.9299 4.2853 12 6 1.5384 -7.1834 3.9148 13 6 0.7501 -8.2959 4.1398 14 6 -0.4918 -8.1560 4.7364 15 9 -1.2625 -9.2436 4.9559 16 6 -0.9431 -6.9014 5.1078 17 6 -0.1499 -5.7883 4.8875 18 9 -0.5869 -4.5638 5.2545 19 6 2.2843 -2.8431 -0.0582 20 6 1.7740 -2.1421 -1.3211 21 7 2.0226 -0.6996 -1.1945 22 6 2.7052 -0.0210 -2.1685 23 1 3.2868 0.8520 -1.9119 24 6 2.6496 -0.4553 -3.4858 25 7 1.6267 -1.1728 -3.8995 26 14 4.0267 -0.0216 -4.6712 27 1 3.7312 -0.6007 -6.0063 28 1 4.1354 1.4550 -4.7846 29 1 5.3083 -0.5749 -4.1647 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5084 -0.8931 33 1 1.5987 -0.2724 2.1349 34 1 3.1240 -0.6413 1.2942 35 1 2.8564 -2.5412 2.8798 36 1 2.9859 -5.0294 3.9072 37 1 1.8796 -4.0430 4.8929 38 1 2.5066 -7.2934 3.4490 39 1 1.1027 -9.2747 3.8503 40 1 -1.9117 -6.7914 5.5728 41 1 2.0200 -3.8999 -0.0966 42 1 3.3678 -2.7410 0.0020 43 1 0.7043 -2.3203 -1.4310 44 1 2.3024 -2.5288 -2.1925 45 1 0.8724 -1.3274 -3.3095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947327872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:17 Heat of formation + Delta-G solvation = -110.276879 kcal Electronic energy + Delta-G solvation = -29368.029416 eV Core-core repulsion = 25020.676062 eV Total energy + Delta-G solvation = -4347.353355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.08418 -50.04897 -41.23610 -40.01293 -39.18743 -36.18127 -34.48211 -33.80852 -32.55894 -31.82568 -31.15478 -28.91905 -28.05523 -26.05236 -24.26594 -23.94764 -23.62326 -22.80586 -21.42989 -20.24465 -19.37180 -19.22306 -18.32827 -18.01332 -17.60049 -16.95384 -16.88617 -16.45664 -16.35774 -16.15624 -16.01304 -15.79328 -15.47997 -15.43180 -15.13786 -15.01959 -14.70992 -14.54049 -14.30251 -13.92401 -13.81006 -13.46333 -13.02880 -12.97512 -12.80936 -12.77226 -12.61575 -12.46537 -12.36348 -12.32304 -11.97365 -11.92348 -11.75821 -11.48354 -11.17935 -10.89990 -10.45659 -10.09550 -10.02549 -9.66004 -8.91977 -8.22090 -5.38987 -0.13074 -0.00279 1.59376 1.65978 1.66936 1.85310 2.07375 2.46933 2.67210 2.84027 3.24442 3.35251 3.48263 3.48887 3.55750 3.73091 3.87079 3.95529 4.00606 4.10681 4.20781 4.30448 4.39314 4.43211 4.51872 4.56288 4.62102 4.73027 4.75905 4.78967 4.84662 4.91625 4.99215 5.02503 5.02843 5.04637 5.17478 5.18385 5.21912 5.26775 5.51999 5.55753 5.73279 5.89191 6.40798 6.61179 7.08678 7.31219 7.80076 8.26133 9.02962 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.002423 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.124505 B =11551.056254 C =12067.549035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.059 0.941 7 N -0.710 5.710 8 C 0.508 3.492 9 O -0.583 6.583 10 C -0.094 4.094 11 C -0.118 4.118 12 C -0.049 4.049 13 C -0.158 4.158 14 C 0.113 3.887 15 F -0.138 7.138 16 C -0.202 4.202 17 C 0.123 3.877 18 F -0.139 7.139 19 C -0.126 4.126 20 C 0.165 3.835 21 N -0.606 5.606 22 C -0.350 4.350 23 H 0.056 0.944 24 C -0.079 4.079 25 N -0.946 5.946 26 Si 1.115 2.885 27 H -0.297 1.297 28 H -0.275 1.275 29 H -0.278 1.278 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.417 0.583 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.153 0.847 41 H 0.048 0.952 42 H 0.065 0.935 43 H -0.006 1.006 44 H 0.042 0.958 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 -10.529 23.369 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.083 0.917 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.077 0.923 7 N -0.362 5.362 8 C 0.296 3.704 9 O -0.463 6.463 10 C -0.133 4.133 11 C -0.120 4.120 12 C -0.067 4.067 13 C -0.177 4.177 14 C 0.094 3.906 15 F -0.117 7.117 16 C -0.222 4.222 17 C 0.104 3.896 18 F -0.118 7.118 19 C -0.166 4.166 20 C 0.038 3.962 21 N -0.330 5.330 22 C -0.480 4.480 23 H 0.073 0.927 24 C -0.275 4.275 25 N -0.588 5.588 26 Si 0.939 3.061 27 H -0.223 1.223 28 H -0.201 1.201 29 H -0.204 1.204 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.168 0.832 37 H 0.146 0.854 38 H 0.192 0.808 39 H 0.185 0.815 40 H 0.171 0.829 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.012 0.988 44 H 0.060 0.940 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.560 -11.017 21.420 24.349 hybrid contribution -1.342 0.445 1.295 1.917 sum 2.218 -10.572 22.715 25.153 Atomic orbital electron populations 1.22219 0.98299 1.00306 1.00639 1.20612 0.92030 0.95447 0.86458 0.91652 1.22032 1.01993 0.93081 0.98545 1.20631 0.98066 0.91972 0.83611 0.92256 1.45994 1.35589 1.26910 1.27699 1.21161 0.82213 0.80513 0.86551 1.90736 1.30134 1.66464 1.58942 1.20690 1.01942 0.94605 0.96045 1.19694 0.94258 0.96877 1.01129 1.21169 1.01051 0.89296 0.95196 1.21506 0.92780 1.02198 1.01198 1.17489 0.90631 0.82301 1.00171 1.91512 1.74820 1.52619 1.92720 1.21128 1.02844 0.91022 1.07188 1.17355 0.93608 0.79684 0.98975 1.91490 1.89683 1.41271 1.89337 1.22210 1.00537 0.98284 0.95560 1.20618 0.95318 0.84442 0.95821 1.44395 1.64952 1.02866 1.20770 1.20222 1.24744 1.13797 0.89191 0.92650 1.27217 1.02699 0.99710 0.97841 1.70898 1.06251 1.43692 1.37973 0.82863 0.73179 0.76348 0.73687 1.22320 1.20062 1.20360 0.94573 0.90546 0.95501 0.89049 0.90679 0.74570 0.83212 0.85385 0.80825 0.81503 0.82908 0.93290 0.91672 0.98822 0.93962 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.89 9.02 71.98 0.65 -5.24 16 2 C 0.16 6.30 3.27 44.83 0.15 6.45 16 3 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 4 C -0.12 -3.46 4.99 30.53 0.15 -3.31 16 5 C 0.16 5.15 2.21 45.02 0.10 5.25 16 6 H 0.06 2.25 5.93 -2.39 -0.01 2.23 16 7 N -0.71 -16.12 5.08 -442.39 -2.25 -18.37 16 8 C 0.51 12.53 7.78 87.66 0.68 13.21 16 9 O -0.58 -20.80 15.62 -3.02 -0.05 -20.85 16 10 C -0.09 -1.33 5.56 29.10 0.16 -1.17 16 11 C -0.12 -2.14 4.43 -19.82 -0.09 -2.23 16 12 C -0.05 -0.70 9.66 22.26 0.22 -0.49 16 13 C -0.16 -2.36 10.03 22.32 0.22 -2.13 16 14 C 0.11 2.15 7.30 22.37 0.16 2.31 16 15 F -0.14 -2.74 17.27 44.97 0.78 -1.97 16 16 C -0.20 -4.11 10.01 22.36 0.22 -3.88 16 17 C 0.12 2.69 7.14 22.37 0.16 2.85 16 18 F -0.14 -3.37 16.66 44.97 0.75 -2.62 16 19 C -0.13 -4.79 5.65 30.67 0.17 -4.61 16 20 C 0.16 8.00 4.29 86.36 0.37 8.37 16 21 N -0.61 -29.65 2.55 -676.05 -1.72 -31.37 16 22 C -0.35 -19.18 9.48 84.03 0.80 -18.39 16 23 H 0.06 2.99 7.94 -2.91 -0.02 2.97 16 24 C -0.08 -4.47 4.69 84.86 0.40 -4.07 16 25 N -0.95 -58.70 12.45 21.65 0.27 -58.43 16 26 Si 1.11 50.71 29.98 68.60 2.06 52.77 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 30 H 0.04 1.44 5.74 -2.39 -0.01 1.43 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.42 6.09 8.60 -92.71 -0.80 5.29 16 36 H 0.15 0.95 8.00 -2.39 -0.02 0.93 16 37 H 0.13 1.31 7.94 -2.39 -0.02 1.30 16 38 H 0.17 1.35 8.04 -2.91 -0.02 1.33 16 39 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 43 H -0.01 -0.32 7.23 -2.39 -0.02 -0.34 16 44 H 0.04 2.34 6.39 -2.39 -0.02 2.32 16 45 H 0.25 16.11 6.71 -92.71 -0.62 15.49 16 Total: -1.00 -76.23 371.83 4.74 -71.49 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.37 Total: 16.43 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.53 Total: -7.08 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -3.70 Total: -108.17 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 1.53 Total: -4.59 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.06 Total: 52.77 kcal Total: -76.23 4.74 -71.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947327872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.788 kcal (2) G-P(sol) polarization free energy of solvation -76.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds