Wall clock time and date at job start Tue Mar 31 2020 21:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.70568 * 2 1 4 4 C 1.52760 * 109.50865 * 239.87711 * 2 1 3 5 5 C 1.53034 * 109.38235 * 185.70639 * 4 2 1 6 6 H 1.09005 * 109.46134 * 181.26054 * 5 4 2 7 7 N 1.46496 * 109.45409 * 301.23045 * 5 4 2 8 8 C 1.34775 * 120.00321 * 205.06349 * 7 5 4 9 9 O 1.21281 * 120.00347 * 359.97438 * 8 7 5 10 10 C 1.50705 * 120.00117 * 179.97438 * 8 7 5 11 11 C 1.50697 * 109.47008 * 179.97438 * 10 8 7 12 12 C 1.38417 * 120.02687 * 269.72085 * 11 10 8 13 13 F 1.35107 * 120.01219 * 359.97438 * 12 11 10 14 14 C 1.38476 * 119.97770 * 179.69963 * 12 11 10 15 15 C 1.38206 * 120.02276 * 0.60230 * 14 12 11 16 16 C 1.38210 * 120.04773 * 359.67649 * 15 14 12 17 17 C 1.38421 * 120.02636 * 90.00264 * 11 10 8 18 18 F 1.35098 * 120.01126 * 359.97438 * 17 11 10 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07996 * 120.00142 * 211.24212 * 22 21 20 24 24 C 1.38809 * 119.99730 * 31.23638 * 22 21 20 25 25 N 1.31628 * 120.00153 * 23.06164 * 24 22 21 26 26 Si 1.86798 * 120.00182 * 203.05899 * 24 22 21 27 27 H 1.48497 * 109.47551 * 180.02562 * 26 24 22 28 28 H 1.48502 * 109.47381 * 300.00030 * 26 24 22 29 29 H 1.48498 * 109.46991 * 59.99982 * 26 24 22 30 30 H 1.08999 * 109.47017 * 299.64742 * 1 2 3 31 31 H 1.09002 * 109.47008 * 59.64387 * 1 2 3 32 32 H 1.09004 * 109.47403 * 179.64720 * 1 2 3 33 33 H 1.09001 * 109.56005 * 65.67674 * 4 2 1 34 34 H 1.09000 * 109.38856 * 305.63672 * 4 2 1 35 35 H 0.96998 * 119.99626 * 25.06164 * 7 5 4 36 36 H 1.09000 * 109.46989 * 299.99840 * 10 8 7 37 37 H 1.09000 * 109.46955 * 59.99781 * 10 8 7 38 38 H 1.07998 * 119.98904 * 180.32179 * 14 12 11 39 39 H 1.07991 * 119.97792 * 179.69730 * 15 14 12 40 40 H 1.08002 * 119.98493 * 180.02562 * 16 15 14 41 41 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 42 42 H 1.08999 * 109.49891 * 58.58386 * 19 5 4 43 43 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 44 44 H 1.09004 * 109.70226 * 174.48951 * 20 19 5 45 45 H 0.96993 * 119.99570 * 5.81319 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7226 -1.2454 5 6 3.5637 -0.8463 -1.1726 6 1 3.9313 -1.3419 -2.0712 7 7 4.1575 0.4893 -1.0742 8 6 5.4212 0.6976 -1.4938 9 8 6.0671 -0.2208 -1.9524 10 6 6.0318 2.0718 -1.3932 11 6 7.4415 2.0352 -1.9246 12 6 8.4966 1.7631 -1.0710 13 9 8.2632 1.5306 0.2393 14 6 9.7910 1.7235 -1.5616 15 6 10.0308 1.9680 -2.9005 16 6 8.9786 2.2455 -3.7526 17 6 7.6828 2.2794 -3.2655 18 9 6.6545 2.5502 -4.0988 19 6 3.9522 -1.6688 0.0582 20 6 3.4644 -0.9519 1.3211 21 7 2.0225 -0.6996 1.1945 22 6 1.1535 -1.1135 2.1685 23 1 0.1451 -1.3983 1.9071 24 6 1.5688 -1.1670 3.4920 25 7 2.5810 -0.4280 3.8946 26 14 0.6913 -2.2876 4.7017 27 1 1.3217 -2.1615 6.0403 28 1 -0.7389 -1.8976 4.7900 29 1 0.7929 -3.6942 4.2367 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5194 -0.8868 32 1 -0.3634 -1.0277 -0.0063 33 1 1.7632 -0.1566 -2.1349 34 1 1.5963 -1.7170 -1.2941 35 1 3.6411 1.2238 -0.7072 36 1 5.4406 2.7758 -1.9787 37 1 6.0451 2.3879 -0.3501 38 1 10.6138 1.5061 -0.8968 39 1 11.0410 1.9418 -3.2814 40 1 9.1671 2.4359 -4.7989 41 1 5.0363 -1.7762 0.0966 42 1 3.4904 -2.6543 -0.0021 43 1 3.9928 -0.0050 1.4310 44 1 3.6505 -1.5777 2.1940 45 1 2.9824 0.2153 3.2898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947653099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:20 Heat of formation + Delta-G solvation = -105.577248 kcal Electronic energy + Delta-G solvation = -30141.962019 eV Core-core repulsion = 25794.812455 eV Total energy + Delta-G solvation = -4347.149563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.09343 -50.07255 -41.36295 -39.95012 -39.16048 -36.12233 -34.33593 -34.13076 -32.89740 -31.29681 -31.28544 -28.82347 -27.95227 -26.73432 -23.99305 -23.90531 -23.51500 -22.50998 -21.81086 -20.33758 -19.21055 -18.87262 -18.44971 -18.42571 -17.26769 -16.94699 -16.83329 -16.64164 -16.45837 -16.36246 -16.27231 -15.87558 -15.48844 -15.44667 -15.18071 -14.97954 -14.69771 -14.49807 -14.23304 -13.78865 -13.56761 -13.41963 -13.23006 -12.97515 -12.77635 -12.72746 -12.64163 -12.52556 -12.38273 -12.34692 -11.97418 -11.92473 -11.77833 -11.51755 -11.10548 -10.97824 -10.43361 -10.13639 -9.92768 -9.76858 -8.85335 -8.14798 -5.36605 -0.07395 -0.03774 1.52224 1.58100 1.65417 1.83084 2.08092 2.44420 2.67017 2.86630 3.25917 3.29446 3.38993 3.48001 3.60503 3.71397 3.86363 3.91168 3.94530 4.07740 4.20063 4.25892 4.31897 4.33113 4.46131 4.51922 4.60335 4.78047 4.81871 4.81922 4.87344 4.92262 4.99578 5.00751 5.02883 5.03598 5.17303 5.17917 5.21241 5.43588 5.45711 5.53941 5.76020 5.97224 6.44474 6.46624 7.12008 7.13217 7.83474 8.29475 9.07700 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.003046 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.858339 B = 9189.605889 C =10163.016266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.162 3.838 3 H 0.025 0.975 4 C -0.124 4.124 5 C 0.161 3.839 6 H 0.078 0.922 7 N -0.709 5.709 8 C 0.516 3.484 9 O -0.575 6.575 10 C -0.102 4.102 11 C -0.154 4.154 12 C 0.110 3.890 13 F -0.145 7.145 14 C -0.162 4.162 15 C -0.051 4.051 16 C -0.158 4.158 17 C 0.120 3.880 18 F -0.137 7.137 19 C -0.136 4.136 20 C 0.170 3.830 21 N -0.608 5.608 22 C -0.340 4.340 23 H 0.060 0.940 24 C -0.078 4.078 25 N -0.948 5.948 26 Si 1.109 2.891 27 H -0.297 1.297 28 H -0.274 1.274 29 H -0.284 1.284 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.407 0.593 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.163 0.837 39 H 0.186 0.814 40 H 0.170 0.830 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.005 0.995 44 H 0.033 0.967 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.642 8.045 -17.217 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.057 3.943 3 H 0.043 0.957 4 C -0.164 4.164 5 C 0.057 3.943 6 H 0.096 0.904 7 N -0.361 5.361 8 C 0.303 3.697 9 O -0.455 6.455 10 C -0.142 4.142 11 C -0.156 4.156 12 C 0.091 3.909 13 F -0.123 7.123 14 C -0.181 4.181 15 C -0.068 4.068 16 C -0.177 4.177 17 C 0.100 3.900 18 F -0.116 7.116 19 C -0.176 4.176 20 C 0.044 3.956 21 N -0.334 5.334 22 C -0.470 4.470 23 H 0.078 0.922 24 C -0.275 4.275 25 N -0.590 5.590 26 Si 0.935 3.065 27 H -0.224 1.224 28 H -0.200 1.200 29 H -0.210 1.210 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.244 0.756 36 H 0.150 0.850 37 H 0.133 0.867 38 H 0.181 0.819 39 H 0.203 0.797 40 H 0.188 0.812 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.023 0.977 44 H 0.052 0.948 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.989 6.827 -15.963 21.098 hybrid contribution -0.580 0.761 -0.613 1.136 sum 11.409 7.588 -16.576 21.506 Atomic orbital electron populations 1.21704 0.94485 1.01297 1.00946 1.20560 0.94426 0.93074 0.86280 0.95736 1.22153 0.92715 1.02514 0.98973 1.20736 0.93793 0.82740 0.97070 0.90382 1.46067 1.14196 1.12424 1.63388 1.20782 0.81543 0.90779 0.76614 1.90657 1.61789 1.45921 1.47107 1.20535 0.92911 0.95332 1.05374 1.19401 0.95138 1.07507 0.93573 1.17623 0.94514 1.00985 0.77800 1.91508 1.95532 1.91936 1.33356 1.21572 0.94668 1.03390 0.98460 1.21334 1.00946 0.93710 0.90818 1.21584 0.89710 1.03144 1.03260 1.17432 0.85604 1.00788 0.86142 1.91488 1.58349 1.91105 1.70635 1.22272 0.99164 0.99453 0.96757 1.20560 0.84504 0.95538 0.94963 1.44395 1.02221 1.66178 1.20571 1.20160 0.97077 1.41419 0.88380 0.92205 1.27069 1.00582 1.01613 0.98205 1.70894 1.27902 1.22419 1.37817 0.82920 0.74944 0.74810 0.73861 1.22369 1.19994 1.21022 0.94328 0.90408 0.93443 0.88993 0.90803 0.75598 0.85045 0.86709 0.81897 0.79674 0.81223 0.93585 0.91789 0.97718 0.94832 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 7.95 71.98 0.57 -3.82 16 2 C 0.16 6.05 3.19 44.83 0.14 6.19 16 3 H 0.03 0.91 6.64 -2.39 -0.02 0.89 16 4 C -0.12 -3.86 5.05 30.53 0.15 -3.70 16 5 C 0.16 5.45 2.78 45.02 0.13 5.58 16 6 H 0.08 2.66 7.58 -2.38 -0.02 2.64 16 7 N -0.71 -22.14 4.26 -442.40 -1.89 -24.03 16 8 C 0.52 16.68 7.79 87.66 0.68 17.37 16 9 O -0.57 -22.52 15.70 -3.03 -0.05 -22.56 16 10 C -0.10 -2.60 5.48 29.10 0.16 -2.44 16 11 C -0.15 -3.93 4.38 -19.78 -0.09 -4.01 16 12 C 0.11 2.77 7.24 22.37 0.16 2.94 16 13 F -0.14 -4.31 16.47 44.97 0.74 -3.57 16 14 C -0.16 -2.84 10.03 22.32 0.22 -2.61 16 15 C -0.05 -0.63 10.04 22.26 0.22 -0.40 16 16 C -0.16 -2.43 10.02 22.32 0.22 -2.21 16 17 C 0.12 2.68 7.24 22.37 0.16 2.84 16 18 F -0.14 -3.24 16.48 44.97 0.74 -2.50 16 19 C -0.14 -5.51 5.77 30.67 0.18 -5.33 16 20 C 0.17 8.16 4.45 86.36 0.38 8.54 16 21 N -0.61 -29.02 2.81 -676.06 -1.90 -30.93 16 22 C -0.34 -18.26 8.44 84.03 0.71 -17.55 16 23 H 0.06 3.16 6.33 -2.91 -0.02 3.14 16 24 C -0.08 -4.42 4.71 84.86 0.40 -4.02 16 25 N -0.95 -57.92 12.52 21.65 0.27 -57.65 16 26 Si 1.11 51.19 29.98 68.60 2.06 53.25 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 30 H 0.04 1.50 7.64 -2.39 -0.02 1.48 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.70 7.43 -2.38 -0.02 1.68 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.41 11.67 6.87 -92.71 -0.64 11.03 16 36 H 0.13 2.65 7.64 -2.39 -0.02 2.63 16 37 H 0.11 2.81 7.63 -2.39 -0.02 2.79 16 38 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 39 H 0.19 0.70 8.06 -2.92 -0.02 0.68 16 40 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 42 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.00 0.24 7.43 -2.39 -0.02 0.22 16 44 H 0.03 1.86 6.50 -2.38 -0.02 1.85 16 45 H 0.25 15.72 6.70 -92.71 -0.62 15.09 16 Total: -1.00 -72.92 367.38 4.92 -67.99 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.54 Total: 22.65 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 4.42 Total: -2.67 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -3.52 Total: -112.60 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 1.48 Total: -6.07 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.06 Total: 53.25 kcal Total: -72.92 4.92 -67.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947653099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.586 kcal (2) G-P(sol) polarization free energy of solvation -72.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds