Wall clock time and date at job start Tue Mar 31 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.58953 * 2 1 4 4 C 1.53191 * 109.58821 * 239.71314 * 2 1 3 5 5 C 1.53041 * 109.31728 * 185.57859 * 4 2 1 6 6 H 1.09004 * 109.46003 * 301.35792 * 5 4 2 7 7 N 1.46501 * 109.46261 * 181.39080 * 5 4 2 8 8 C 1.34776 * 120.00265 * 154.72300 * 7 5 4 9 9 O 1.21279 * 119.99513 * 0.27485 * 8 7 5 10 10 C 1.50696 * 120.00120 * 180.26915 * 8 7 5 11 11 C 1.50694 * 109.47213 * 180.02562 * 10 8 7 12 12 C 1.38416 * 120.02765 * 269.72797 * 11 10 8 13 13 F 1.35103 * 120.01200 * 359.97438 * 12 11 10 14 14 C 1.38477 * 119.97484 * 179.75266 * 12 11 10 15 15 C 1.38206 * 120.02318 * 0.51908 * 14 12 11 16 16 C 1.38202 * 120.05264 * 359.75363 * 15 14 12 17 17 C 1.38420 * 120.02581 * 90.00585 * 11 10 8 18 18 F 1.35102 * 120.01082 * 359.97438 * 17 11 10 19 19 C 1.53036 * 109.53964 * 61.36208 * 5 4 2 20 20 C 1.53190 * 109.31638 * 298.63813 * 19 5 4 21 21 N 1.46929 * 109.59069 * 120.42372 * 2 1 3 22 22 C 1.36941 * 120.62960 * 353.41968 * 21 2 1 23 23 H 1.08003 * 119.99311 * 29.03789 * 22 21 2 24 24 C 1.38807 * 120.00225 * 209.03958 * 22 21 2 25 25 N 1.31617 * 119.99905 * 15.04680 * 24 22 21 26 26 Si 1.86798 * 120.00330 * 195.04258 * 24 22 21 27 27 H 1.48501 * 109.47043 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47261 * 120.00014 * 26 24 22 29 29 H 1.48495 * 109.47273 * 240.00342 * 26 24 22 30 30 H 1.09002 * 109.47161 * 180.28709 * 1 2 3 31 31 H 1.09004 * 109.46786 * 300.28441 * 1 2 3 32 32 H 1.08997 * 109.47194 * 60.28619 * 1 2 3 33 33 H 1.09003 * 109.49424 * 65.62400 * 4 2 1 34 34 H 1.08996 * 109.52369 * 305.54561 * 4 2 1 35 35 H 0.97003 * 119.99691 * 334.99244 * 7 5 4 36 36 H 1.08996 * 109.47065 * 300.00635 * 10 8 7 37 37 H 1.09003 * 109.46857 * 59.99950 * 10 8 7 38 38 H 1.07999 * 119.98700 * 180.27928 * 14 12 11 39 39 H 1.08006 * 119.97212 * 179.77324 * 15 14 12 40 40 H 1.08000 * 119.99130 * 179.97438 * 16 15 14 41 41 H 1.09006 * 109.49572 * 58.58868 * 19 5 4 42 42 H 1.08994 * 109.49893 * 178.68118 * 19 5 4 43 43 H 1.08996 * 109.58914 * 294.84775 * 20 19 5 44 44 H 1.09001 * 109.70573 * 174.48424 * 20 19 5 45 45 H 0.96994 * 120.00250 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 6 3.5675 -0.8466 -1.1712 6 1 4.0061 0.1486 -1.0989 7 7 4.0652 -1.5128 -2.3773 8 6 5.3276 -1.2944 -2.7956 9 8 6.0532 -0.5502 -2.1707 10 6 5.8376 -1.9750 -4.0396 11 6 7.2669 -1.5660 -4.2859 12 6 7.5454 -0.4563 -5.0650 13 9 6.5358 0.2605 -5.6056 14 6 8.8591 -0.0785 -5.2865 15 6 9.8922 -0.8152 -4.7387 16 6 9.6155 -1.9266 -3.9653 17 6 8.3025 -2.3031 -3.7380 18 9 8.0323 -3.3894 -2.9816 19 6 3.9569 -1.6658 0.0614 20 6 3.4651 -0.9486 1.3226 21 7 2.0226 -0.7010 1.1936 22 6 1.1537 -1.1161 2.1673 23 1 0.1362 -1.3710 1.9099 24 6 1.5806 -1.2094 3.4847 25 7 2.7030 -0.6304 3.8553 26 14 0.5622 -2.1564 4.7319 27 1 -0.6453 -2.7092 4.0674 28 1 1.3723 -3.2688 5.2901 29 1 0.1504 -1.2448 5.8293 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 1.7659 -0.1642 -2.1370 34 1 1.6030 -1.7237 -1.2940 35 1 3.4848 -2.1081 -2.8770 36 1 5.7866 -3.0559 -3.9093 37 1 5.2236 -1.6825 -4.8914 38 1 9.0765 0.7899 -5.8906 39 1 10.9166 -0.5218 -4.9150 40 1 10.4236 -2.5018 -3.5381 41 1 3.4983 -2.6529 0.0020 42 1 5.0411 -1.7698 0.1014 43 1 3.9903 0.0003 1.4317 44 1 3.6521 -1.5724 2.1967 45 1 3.0012 -0.6953 4.7760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947653102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:29 Heat of formation + Delta-G solvation = -105.824524 kcal Electronic energy + Delta-G solvation = -29543.145629 eV Core-core repulsion = 25195.985343 eV Total energy + Delta-G solvation = -4347.160286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.06436 -50.05353 -41.16224 -39.81833 -39.10922 -36.13183 -34.32218 -34.06903 -32.92149 -31.34789 -31.26540 -28.89260 -27.85339 -26.60752 -24.05900 -23.89114 -23.40118 -22.31627 -21.44564 -20.85208 -19.18989 -18.51912 -18.41780 -18.04793 -17.49623 -17.02363 -16.86812 -16.61867 -16.44803 -16.33332 -16.11692 -15.73743 -15.53165 -15.46514 -15.03699 -14.80801 -14.62926 -14.48167 -14.34004 -13.77265 -13.40011 -13.34931 -12.99272 -12.94688 -12.75006 -12.70237 -12.63799 -12.60401 -12.38784 -12.32685 -12.06025 -11.86393 -11.73753 -11.52197 -11.36231 -10.94952 -10.57400 -10.04235 -9.90075 -9.74762 -8.66508 -7.84213 -5.31174 -0.05310 -0.01837 1.46255 1.48074 1.58128 1.58376 2.08927 2.46123 2.52069 2.89041 3.31865 3.32758 3.40972 3.57140 3.64062 3.79740 3.88448 3.94042 4.04762 4.22182 4.25298 4.36949 4.37584 4.37933 4.59637 4.69874 4.73765 4.78512 4.83231 4.85134 4.94262 5.02597 5.04651 5.05626 5.08885 5.14587 5.20002 5.36909 5.46744 5.54393 5.55123 5.69618 5.72377 5.77899 6.42301 6.55305 7.16001 7.24575 7.87729 8.40825 9.23384 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019745 B = 0.002619 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.706010 B =10689.765346 C =11466.372610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.009 0.991 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.052 0.948 7 N -0.709 5.709 8 C 0.510 3.490 9 O -0.581 6.581 10 C -0.097 4.097 11 C -0.155 4.155 12 C 0.118 3.882 13 F -0.138 7.138 14 C -0.162 4.162 15 C -0.053 4.053 16 C -0.164 4.164 17 C 0.114 3.886 18 F -0.141 7.141 19 C -0.129 4.129 20 C 0.184 3.816 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.082 0.918 24 C -0.059 4.059 25 N -0.942 5.942 26 Si 0.965 3.035 27 H -0.260 1.260 28 H -0.295 1.295 29 H -0.296 1.296 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.416 0.584 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.167 0.833 39 H 0.183 0.817 40 H 0.164 0.836 41 H 0.062 0.938 42 H 0.040 0.960 43 H -0.016 1.016 44 H 0.056 0.944 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.334 -3.879 -24.373 26.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.027 0.973 4 C -0.156 4.156 5 C 0.057 3.943 6 H 0.070 0.930 7 N -0.360 5.360 8 C 0.297 3.703 9 O -0.461 6.461 10 C -0.136 4.136 11 C -0.157 4.157 12 C 0.098 3.902 13 F -0.116 7.116 14 C -0.181 4.181 15 C -0.071 4.071 16 C -0.183 4.183 17 C 0.095 3.905 18 F -0.119 7.119 19 C -0.170 4.170 20 C 0.057 3.943 21 N -0.327 5.327 22 C -0.377 4.377 23 H 0.100 0.900 24 C -0.254 4.254 25 N -0.589 5.589 26 Si 0.794 3.206 27 H -0.184 1.184 28 H -0.222 1.222 29 H -0.223 1.223 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.254 0.746 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.184 0.816 39 H 0.200 0.800 40 H 0.181 0.819 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.002 0.998 44 H 0.075 0.925 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.803 -3.367 -23.786 26.340 hybrid contribution -0.705 -0.506 1.389 1.638 sum 10.098 -3.872 -22.397 24.871 Atomic orbital electron populations 1.21709 0.93712 1.01776 1.01177 1.20645 0.94831 0.92794 0.86505 0.97321 1.22182 0.92245 1.02372 0.98841 1.20645 0.95090 0.95036 0.83496 0.92986 1.45996 1.13423 1.48691 1.27916 1.20994 0.81787 0.81171 0.86344 1.90711 1.57275 1.39288 1.58798 1.20553 0.92666 1.03487 0.96907 1.19445 0.95711 0.98009 1.02583 1.17464 0.85827 0.90572 0.96322 1.91491 1.59754 1.76598 1.83797 1.21577 0.89822 1.03089 1.03581 1.21315 1.01100 0.91747 0.92892 1.21572 0.94487 1.00229 1.01974 1.17536 0.94113 0.85591 0.93303 1.91494 1.94848 1.51929 1.73668 1.22294 0.98748 0.99668 0.96250 1.20442 0.83722 0.95352 0.94801 1.44441 1.02569 1.65483 1.20196 1.19613 0.95349 1.36101 0.86650 0.90033 1.25899 0.99113 1.01281 0.99068 1.70206 1.25407 1.46682 1.16630 0.85228 0.78583 0.77802 0.79009 1.18435 1.22215 1.22324 0.92510 0.94144 0.90378 0.89207 0.90383 0.74643 0.85322 0.84768 0.81583 0.79966 0.81879 0.91892 0.94153 0.99774 0.92542 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 7.94 71.98 0.57 -3.81 16 2 C 0.16 6.39 3.50 44.97 0.16 6.55 16 3 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 4 C -0.12 -3.67 4.84 30.67 0.15 -3.52 16 5 C 0.16 5.70 2.42 45.02 0.11 5.81 16 6 H 0.05 2.16 7.57 -2.38 -0.02 2.14 16 7 N -0.71 -19.10 5.08 -442.41 -2.25 -21.35 16 8 C 0.51 15.20 7.79 87.66 0.68 15.88 16 9 O -0.58 -23.29 15.69 -3.03 -0.05 -23.34 16 10 C -0.10 -2.01 5.48 29.10 0.16 -1.85 16 11 C -0.16 -3.58 4.38 -19.78 -0.09 -3.66 16 12 C 0.12 2.52 7.24 22.37 0.16 2.68 16 13 F -0.14 -3.15 16.47 44.97 0.74 -2.41 16 14 C -0.16 -2.47 10.03 22.32 0.22 -2.24 16 15 C -0.05 -0.64 10.04 22.25 0.22 -0.41 16 16 C -0.16 -2.65 10.02 22.32 0.22 -2.42 16 17 C 0.11 2.57 7.24 22.37 0.16 2.73 16 18 F -0.14 -3.56 16.48 44.97 0.74 -2.82 16 19 C -0.13 -5.39 5.65 30.67 0.17 -5.22 16 20 C 0.18 9.50 5.29 86.36 0.46 9.96 16 21 N -0.60 -30.32 2.99 -675.23 -2.02 -32.34 16 22 C -0.25 -13.31 8.61 84.03 0.72 -12.59 16 23 H 0.08 4.15 6.20 -2.91 -0.02 4.14 16 24 C -0.06 -3.35 4.96 84.86 0.42 -2.93 16 25 N -0.94 -57.67 11.14 21.65 0.24 -57.43 16 26 Si 0.97 45.34 29.58 68.60 2.03 47.37 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 29 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 30 H 0.06 1.94 7.40 -2.39 -0.02 1.92 16 31 H 0.04 1.56 7.66 -2.38 -0.02 1.55 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.42 7.81 8.60 -92.71 -0.80 7.01 16 36 H 0.13 2.15 7.64 -2.39 -0.02 2.13 16 37 H 0.13 2.06 7.63 -2.39 -0.02 2.04 16 38 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 40 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 41 H 0.06 2.51 8.14 -2.38 -0.02 2.50 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 43 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 44 H 0.06 3.29 6.06 -2.39 -0.01 3.28 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -76.31 372.43 4.17 -72.14 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.22 Total: 15.23 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 4.51 Total: 4.95 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.02 Total: -111.11 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 1.48 Total: -5.23 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -76.31 4.17 -72.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947653102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.689 kcal (2) G-P(sol) polarization free energy of solvation -76.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds