Wall clock time and date at job start Tue Mar 31 2020 21:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.58554 * 2 1 4 4 C 1.53190 * 109.58868 * 239.57040 * 2 1 3 5 5 C 1.53037 * 109.31563 * 185.57835 * 4 2 1 6 6 H 1.09003 * 109.46016 * 301.36132 * 5 4 2 7 7 N 1.46493 * 109.46300 * 181.38633 * 5 4 2 8 8 C 1.34777 * 120.00302 * 155.00089 * 7 5 4 9 9 O 1.21280 * 119.99662 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00319 * 179.97438 * 8 7 5 11 11 C 1.50696 * 109.47236 * 180.02562 * 10 8 7 12 12 C 1.38261 * 119.96045 * 269.72196 * 11 10 8 13 13 C 1.38221 * 120.06799 * 179.72686 * 12 11 10 14 14 C 1.38414 * 119.99738 * 0.54854 * 13 12 11 15 15 F 1.35100 * 120.03154 * 179.75102 * 14 13 12 16 16 C 1.38648 * 119.93040 * 359.72637 * 14 13 12 17 17 F 1.35094 * 120.03522 * 180.02562 * 16 14 13 18 18 C 1.38209 * 119.96583 * 90.00133 * 11 10 8 19 19 C 1.53045 * 109.53563 * 61.36325 * 5 4 2 20 20 C 1.53622 * 109.24433 * 298.51039 * 19 5 4 21 21 N 1.46930 * 108.53959 * 54.85990 * 20 19 5 22 22 C 1.36937 * 120.63201 * 126.36870 * 21 20 19 23 23 H 1.08000 * 119.99750 * 208.84929 * 22 21 20 24 24 C 1.38813 * 119.99747 * 29.12926 * 22 21 20 25 25 N 1.31620 * 120.00107 * 14.76315 * 24 22 21 26 26 Si 1.86803 * 119.99649 * 194.76823 * 24 22 21 27 27 H 1.48497 * 109.47306 * 89.99780 * 26 24 22 28 28 H 1.48503 * 109.47024 * 209.99718 * 26 24 22 29 29 H 1.48497 * 109.46954 * 329.99429 * 26 24 22 30 30 H 1.09004 * 109.46871 * 299.71914 * 1 2 3 31 31 H 1.09004 * 109.46729 * 59.71764 * 1 2 3 32 32 H 1.08993 * 109.47308 * 179.71651 * 1 2 3 33 33 H 1.09001 * 109.49706 * 305.53146 * 4 2 1 34 34 H 1.09004 * 109.49436 * 65.59544 * 4 2 1 35 35 H 0.97003 * 120.00098 * 334.99820 * 7 5 4 36 36 H 1.09006 * 109.47068 * 300.00310 * 10 8 7 37 37 H 1.09000 * 109.47183 * 59.99658 * 10 8 7 38 38 H 1.08000 * 119.96467 * 0.02562 * 12 11 10 39 39 H 1.07996 * 119.99725 * 180.28545 * 13 12 11 40 40 H 1.07994 * 120.00537 * 0.02562 * 18 11 10 41 41 H 1.08999 * 109.49613 * 58.58696 * 19 5 4 42 42 H 1.09001 * 109.49875 * 178.68400 * 19 5 4 43 43 H 1.08996 * 109.74167 * 295.12493 * 20 19 5 44 44 H 1.08997 * 109.66618 * 174.54708 * 20 19 5 45 45 H 0.97000 * 119.99976 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8495 -1.1690 6 1 4.0062 0.1459 -1.0992 7 7 4.0653 -1.5188 -2.3733 8 6 5.3295 -1.3057 -2.7890 9 8 6.0550 -0.5596 -2.1662 10 6 5.8417 -1.9947 -4.0275 11 6 7.2728 -1.5905 -4.2718 12 6 7.5544 -0.4870 -5.0558 13 6 8.8660 -0.1110 -5.2767 14 6 9.8994 -0.8460 -4.7220 15 9 11.1818 -0.4820 -4.9416 16 6 9.6171 -1.9559 -3.9405 17 9 10.6240 -2.6745 -3.3976 18 6 8.3024 -2.3265 -3.7166 19 6 3.9569 -1.6656 0.0657 20 6 3.4657 -0.9403 1.3277 21 7 2.0225 -0.6980 1.1954 22 6 1.1537 -1.1099 2.1704 23 1 0.1364 -1.3662 1.9140 24 6 1.5789 -1.1924 3.4893 25 7 2.7013 -0.6112 3.8564 26 14 0.5582 -2.1284 4.7428 27 1 0.9928 -3.5480 4.7744 28 1 0.7466 -1.5231 6.0858 29 1 -0.8762 -2.0580 4.3650 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6030 -1.7270 -1.2891 34 1 1.7656 -0.1698 -2.1366 35 1 3.4850 -2.1153 -2.8716 36 1 5.7878 -3.0748 -3.8911 37 1 5.2311 -1.7057 -4.8829 38 1 6.7486 0.0845 -5.4922 39 1 9.0845 0.7538 -5.8855 40 1 8.0813 -3.1911 -3.1084 41 1 3.4983 -2.6528 0.0088 42 1 5.0412 -1.7695 0.1061 43 1 3.9877 0.0108 1.4324 44 1 3.6532 -1.5608 2.2039 45 1 2.9987 -0.6692 4.7779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947663697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:35 Heat of formation + Delta-G solvation = -87.337353 kcal Electronic energy + Delta-G solvation = -28902.122328 eV Core-core repulsion = 24555.763706 eV Total energy + Delta-G solvation = -4346.358622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.66358 -48.74054 -40.20578 -38.96102 -37.58525 -34.61097 -32.98348 -32.40001 -31.31144 -31.05458 -29.62318 -27.64424 -26.33570 -24.76725 -23.56723 -22.66951 -21.91812 -20.97201 -20.08903 -19.24862 -18.18015 -17.45768 -17.23726 -17.10344 -16.47632 -16.26886 -15.84023 -15.22841 -15.15097 -15.04361 -14.74206 -14.47253 -14.19478 -13.98862 -13.84374 -13.63081 -13.38861 -13.27176 -12.86959 -12.74768 -12.33412 -12.16402 -12.04455 -11.62218 -11.54790 -11.24670 -11.11835 -10.93381 -10.91322 -10.68435 -10.32509 -10.16886 -10.06836 -9.88974 -9.75683 -9.43148 -9.30975 -8.86855 -8.74776 -8.43840 -6.66108 -5.77864 -3.22530 0.61505 0.73359 2.69933 2.94052 3.36374 3.43450 3.44059 3.45000 3.53915 4.06174 4.18343 4.27883 4.47827 4.67096 4.78025 4.83175 4.99436 5.13217 5.25075 5.35572 5.40455 5.44784 5.52800 5.56376 5.61089 5.70372 5.74743 5.96764 6.02764 6.12551 6.22450 6.28811 6.38481 6.39753 6.46002 6.48573 6.61744 6.76814 6.86146 7.00839 7.07196 7.37286 7.63477 7.69970 7.81238 8.33596 8.45994 9.21447 9.84842 10.41660 11.30511 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.002282 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.178177 B =12269.215672 C =13105.280366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.170 3.830 3 H 0.026 0.974 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.081 0.919 7 N -0.724 5.724 8 C 0.509 3.491 9 O -0.531 6.531 10 C -0.105 4.105 11 C -0.042 4.042 12 C -0.086 4.086 13 C -0.123 4.123 14 C 0.063 3.937 15 F -0.131 7.131 16 C 0.070 3.930 17 F -0.129 7.129 18 C -0.111 4.111 19 C -0.146 4.146 20 C 0.175 3.825 21 N -0.588 5.588 22 C -0.251 4.251 23 H 0.071 0.929 24 C 0.002 3.998 25 N -0.903 5.903 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.395 0.605 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.020 0.980 44 H 0.091 0.909 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 -3.072 -21.580 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.099 0.901 7 N -0.374 5.374 8 C 0.294 3.706 9 O -0.407 6.407 10 C -0.145 4.145 11 C -0.043 4.043 12 C -0.104 4.104 13 C -0.142 4.142 14 C 0.043 3.957 15 F -0.110 7.110 16 C 0.050 3.950 17 F -0.108 7.108 18 C -0.130 4.130 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.311 5.311 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.197 4.197 25 N -0.547 5.547 26 Si 0.731 3.269 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.228 0.772 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.109 0.891 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.434 -2.516 -20.918 22.342 hybrid contribution -0.226 -0.855 0.609 1.074 sum 7.208 -3.371 -20.309 21.812 Atomic orbital electron populations 1.21796 0.95775 1.01370 1.00359 1.20361 0.93067 0.93565 0.86716 0.95604 1.22368 0.93687 1.01607 0.99617 1.21051 0.94217 0.96742 0.83264 0.90109 1.46327 1.13090 1.48695 1.29334 1.20342 0.82226 0.82248 0.85799 1.90763 1.56018 1.36973 1.56935 1.20732 0.93026 1.02610 0.98165 1.19188 0.94045 0.94933 0.96127 1.20939 0.96036 0.95713 0.97743 1.21032 0.91530 1.00437 1.01216 1.17696 0.79836 0.96310 1.01845 1.91523 1.35071 1.91095 1.93274 1.17605 0.85793 0.92582 0.99049 1.91531 1.58888 1.76445 1.83916 1.20930 0.89637 1.01856 1.00563 1.22639 0.99649 0.99550 0.96844 1.20851 0.83146 0.97260 0.93921 1.44192 1.02961 1.65005 1.18958 1.19184 0.94918 1.37825 0.86165 0.91177 1.25114 0.97856 0.99675 0.97026 1.70011 1.23391 1.44394 1.16908 0.86308 0.79815 0.79709 0.81020 1.21526 1.21804 1.20468 0.91847 0.94322 0.92794 0.91811 0.92733 0.77155 0.87498 0.87396 0.84274 0.83620 0.83711 0.92695 0.92994 0.96182 0.89132 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.94 37.16 0.30 -2.11 16 2 C 0.17 3.35 3.49 -67.60 -0.24 3.11 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.08 4.84 -26.61 -0.13 -2.21 16 5 C 0.15 2.45 2.41 -67.89 -0.16 2.29 16 6 H 0.08 1.52 7.58 -51.93 -0.39 1.12 16 7 N -0.72 -8.77 5.08 -53.77 -0.27 -9.04 16 8 C 0.51 6.37 7.79 -10.99 -0.09 6.28 16 9 O -0.53 -9.23 15.70 5.56 0.09 -9.14 16 10 C -0.11 -0.80 5.83 -29.04 -0.17 -0.97 16 11 C -0.04 -0.39 4.37 -104.63 -0.46 -0.85 16 12 C -0.09 -0.73 9.70 -39.58 -0.38 -1.11 16 13 C -0.12 -1.09 10.02 -39.52 -0.40 -1.49 16 14 C 0.06 0.70 7.31 -39.37 -0.29 0.41 16 15 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 16 C 0.07 0.81 7.31 -39.36 -0.29 0.52 16 17 F -0.13 -1.64 17.18 2.25 0.04 -1.60 16 18 C -0.11 -1.14 9.68 -39.53 -0.38 -1.53 16 19 C -0.15 -2.81 5.67 -26.38 -0.15 -2.96 16 20 C 0.17 4.15 5.31 -3.48 -0.02 4.13 16 21 N -0.59 -14.06 2.98 -164.51 -0.49 -14.56 16 22 C -0.25 -6.57 8.60 -15.06 -0.13 -6.70 16 23 H 0.07 1.78 6.21 -52.49 -0.33 1.45 16 24 C 0.00 0.05 4.96 -17.43 -0.09 -0.03 16 25 N -0.90 -25.99 11.13 55.49 0.62 -25.37 16 26 Si 0.90 21.35 29.58 -169.99 -5.03 16.32 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.96 7.45 -51.93 -0.39 0.57 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.40 3.48 8.60 -40.82 -0.35 3.12 16 36 H 0.11 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.11 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -32.30 374.55 -8.80 -41.10 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.37 Total: 1.37 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.07 Total: -3.20 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.15 Total: -48.96 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.30 -8.80 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947663697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.235 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds