Wall clock time and date at job start Tue Mar 31 2020 21:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.08999 * 109.46845 * 301.22059 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21276 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99555 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47129 * 180.02562 * 10 8 7 12 12 C 1.38255 * 119.96419 * 89.99946 * 11 10 8 13 13 C 1.38210 * 120.07497 * 179.97438 * 12 11 10 14 14 C 1.38414 * 119.99622 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.03777 * 179.97438 * 14 13 12 16 16 C 1.38645 * 119.93116 * 359.97438 * 14 13 12 17 17 F 1.35104 * 120.03815 * 180.02562 * 16 14 13 18 18 C 1.38209 * 119.96689 * 269.72731 * 11 10 8 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07995 * 120.00274 * 209.19622 * 22 21 20 24 24 C 1.38814 * 119.99924 * 29.19414 * 22 21 20 25 25 N 1.31623 * 119.99750 * 24.22945 * 24 22 21 26 26 Si 1.86799 * 120.00119 * 204.23697 * 24 22 21 27 27 H 1.48497 * 109.46863 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47014 * 299.99863 * 26 24 22 29 29 H 1.48505 * 109.47110 * 59.99717 * 26 24 22 30 30 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 31 31 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 33 33 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 34 34 H 1.09003 * 109.36332 * 185.33608 * 4 2 1 35 35 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 36 36 H 1.09002 * 109.47608 * 300.00323 * 10 8 7 37 37 H 1.09000 * 109.47224 * 60.00576 * 10 8 7 38 38 H 1.08004 * 119.96342 * 359.97438 * 12 11 10 39 39 H 1.08001 * 120.00357 * 180.02562 * 13 12 11 40 40 H 1.07999 * 120.00193 * 0.02562 * 18 11 10 41 41 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 42 42 H 1.08998 * 109.52068 * 58.60136 * 19 5 4 43 43 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 44 44 H 1.09001 * 109.58413 * 174.42141 * 20 19 5 45 45 H 0.96998 * 120.00078 * 5.78560 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2811 1.0996 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5320 -4.4440 2.1730 10 6 1.9498 -4.7178 4.0397 11 6 1.0887 -5.9299 4.2853 12 6 1.4389 -7.1487 3.7345 13 6 0.6511 -8.2620 3.9587 14 6 -0.4901 -8.1572 4.7349 15 9 -1.2611 -9.2448 4.9541 16 6 -0.8413 -6.9350 5.2872 17 9 -1.9545 -6.8304 6.0456 18 6 -0.0472 -5.8232 5.0654 19 6 2.2843 -2.8431 -0.0582 20 6 1.7740 -2.1421 -1.3211 21 7 2.0226 -0.6996 -1.1945 22 6 2.7052 -0.0210 -2.1685 23 1 3.2868 0.8520 -1.9119 24 6 2.6496 -0.4553 -3.4858 25 7 1.6267 -1.1728 -3.8995 26 14 4.0267 -0.0216 -4.6712 27 1 3.7312 -0.6007 -6.0063 28 1 4.1354 1.4550 -4.7846 29 1 5.3083 -0.5749 -4.1647 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5084 -0.8931 33 1 1.5987 -0.2724 2.1349 34 1 3.1241 -0.6413 1.2936 35 1 2.8564 -2.5412 2.8798 36 1 2.9859 -5.0294 3.9072 37 1 1.8796 -4.0430 4.8929 38 1 2.3290 -7.2310 3.1285 39 1 0.9259 -9.2136 3.5283 40 1 -0.3175 -4.8715 5.4984 41 1 2.0200 -3.8999 -0.0966 42 1 3.3678 -2.7410 0.0020 43 1 0.7043 -2.3203 -1.4310 44 1 2.3024 -2.5288 -2.1925 45 1 0.8724 -1.3274 -3.3095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947663698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:38 Heat of formation + Delta-G solvation = -90.823433 kcal Electronic energy + Delta-G solvation = -29082.800056 eV Core-core repulsion = 24736.290266 eV Total energy + Delta-G solvation = -4346.509790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.70040 -48.77769 -40.28875 -39.08395 -37.83729 -34.68929 -33.06869 -32.63659 -31.15214 -30.94466 -29.50451 -27.73144 -26.86074 -24.25504 -23.59630 -22.74666 -21.93187 -21.64682 -20.36437 -18.61318 -18.20340 -17.62109 -17.48133 -17.22612 -16.83737 -16.47918 -16.06661 -15.21606 -15.18943 -14.80672 -14.63173 -14.45893 -14.24677 -14.12916 -13.79733 -13.60057 -13.47092 -13.36020 -13.01542 -12.78858 -12.35527 -12.20911 -12.19017 -12.08086 -11.71146 -11.57729 -11.25665 -10.88954 -10.77916 -10.60669 -10.43365 -10.23872 -10.00280 -9.90856 -9.73454 -9.37366 -9.27133 -8.90633 -8.81820 -8.37896 -6.90943 -6.07564 -3.26137 0.58120 0.69854 2.63051 2.89795 3.37396 3.48071 3.49922 3.51020 3.69343 4.01732 4.14621 4.25228 4.56499 4.64150 4.73990 4.76349 4.94422 5.09824 5.14246 5.21378 5.38278 5.40897 5.44641 5.48931 5.57288 5.66842 5.68272 5.85576 5.91017 5.99412 6.11738 6.17400 6.23030 6.30199 6.42477 6.42781 6.48210 6.58571 6.73101 6.81305 6.94033 7.06904 7.20786 7.56649 8.00171 8.26223 8.57077 9.10658 9.83069 10.28095 11.20914 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021210 B = 0.002268 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.825796 B =12343.354672 C =12752.832290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.067 0.933 4 C -0.132 4.132 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.724 5.724 8 C 0.509 3.491 9 O -0.531 6.531 10 C -0.105 4.105 11 C -0.043 4.043 12 C -0.085 4.085 13 C -0.123 4.123 14 C 0.064 3.936 15 F -0.131 7.131 16 C 0.069 3.931 17 F -0.130 7.130 18 C -0.112 4.112 19 C -0.141 4.141 20 C 0.154 3.846 21 N -0.591 5.591 22 C -0.351 4.351 23 H 0.055 0.945 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.064 2.936 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.020 0.980 44 H 0.079 0.921 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.037 -9.424 20.595 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.085 0.915 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.375 5.375 8 C 0.295 3.705 9 O -0.407 6.407 10 C -0.145 4.145 11 C -0.044 4.044 12 C -0.103 4.103 13 C -0.141 4.141 14 C 0.044 3.956 15 F -0.109 7.109 16 C 0.049 3.951 17 F -0.108 7.108 18 C -0.131 4.131 19 C -0.182 4.182 20 C 0.028 3.972 21 N -0.314 5.314 22 C -0.480 4.480 23 H 0.073 0.927 24 C -0.225 4.225 25 N -0.554 5.554 26 Si 0.894 3.106 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.162 0.838 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.037 0.963 44 H 0.098 0.902 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.847 -9.984 18.581 21.174 hybrid contribution -0.621 0.274 2.016 2.127 sum 1.226 -9.711 20.597 22.804 Atomic orbital electron populations 1.22336 0.98819 1.00992 1.00296 1.20356 0.91606 0.95286 0.86409 0.91512 1.22215 1.01286 0.94095 0.99590 1.21076 0.99769 0.91378 0.83120 0.89686 1.46308 1.34975 1.27186 1.29017 1.20360 0.83311 0.81005 0.85870 1.90760 1.27839 1.65090 1.57016 1.20728 1.00484 0.95282 0.98012 1.19181 0.94772 0.94459 0.95952 1.20962 1.00068 0.91085 0.98172 1.21051 0.93348 1.01006 0.98725 1.17699 0.93030 0.82568 1.02317 1.91526 1.74002 1.52063 1.93339 1.17597 0.86637 0.93768 0.97134 1.91530 1.49395 1.96685 1.73226 1.20901 0.94340 0.97678 1.00171 1.22439 1.00347 0.99026 0.96356 1.20893 0.97267 0.84043 0.95020 1.44197 1.64578 1.02528 1.20112 1.19933 1.25417 1.14110 0.88506 0.92706 1.25862 1.01422 0.99595 0.95644 1.70774 1.05563 1.41023 1.38016 0.83534 0.75233 0.75613 0.76201 1.21122 1.22003 1.22103 0.93306 0.94189 0.92738 0.92454 0.91805 0.77074 0.87277 0.87522 0.84188 0.83543 0.83799 0.92753 0.92336 0.96250 0.90227 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.02 37.16 0.34 -2.73 16 2 C 0.17 3.36 3.27 -67.82 -0.22 3.14 16 3 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 4 C -0.13 -2.06 4.99 -26.84 -0.13 -2.19 16 5 C 0.15 2.38 2.21 -67.88 -0.15 2.23 16 6 H 0.09 1.56 5.93 -51.93 -0.31 1.25 16 7 N -0.72 -8.59 5.08 -53.76 -0.27 -8.86 16 8 C 0.51 6.24 7.79 -10.99 -0.09 6.15 16 9 O -0.53 -9.05 15.70 5.56 0.09 -8.96 16 10 C -0.11 -0.78 5.83 -29.04 -0.17 -0.95 16 11 C -0.04 -0.39 4.37 -104.63 -0.46 -0.85 16 12 C -0.08 -0.73 9.70 -39.59 -0.38 -1.11 16 13 C -0.12 -1.10 10.02 -39.53 -0.40 -1.49 16 14 C 0.06 0.70 7.31 -39.37 -0.29 0.41 16 15 F -0.13 -1.54 17.18 2.25 0.04 -1.50 16 16 C 0.07 0.77 7.31 -39.37 -0.29 0.48 16 17 F -0.13 -1.58 17.18 2.25 0.04 -1.54 16 18 C -0.11 -1.10 9.68 -39.53 -0.38 -1.48 16 19 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 20 C 0.15 3.55 4.29 -3.72 -0.02 3.53 16 21 N -0.59 -14.05 2.55 -165.03 -0.42 -14.47 16 22 C -0.35 -9.43 9.48 -15.06 -0.14 -9.57 16 23 H 0.06 1.48 7.94 -52.49 -0.42 1.06 16 24 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 25 N -0.91 -27.03 12.45 55.49 0.69 -26.34 16 26 Si 1.06 24.75 29.98 -169.99 -5.10 19.65 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 29 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 30 H 0.05 0.93 5.74 -51.93 -0.30 0.63 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.40 3.40 8.60 -40.82 -0.35 3.05 16 36 H 0.11 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.11 0.52 8.08 -51.93 -0.42 0.10 16 38 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 39 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.47 7.23 -51.93 -0.38 0.09 16 44 H 0.08 2.07 6.39 -51.93 -0.33 1.74 16 45 H 0.27 8.07 6.71 -40.82 -0.27 7.80 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -32.88 372.71 -8.54 -41.42 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.21 Total: 2.90 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.01 Total: -7.92 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.00 Total: -49.67 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.08 Total: -3.04 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.10 Total: 19.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.88 -8.54 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947663698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.403 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds