Wall clock time and date at job start Tue Mar 31 2020 21:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.08999 * 109.46845 * 301.22059 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21276 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99555 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47129 * 180.02562 * 10 8 7 12 12 C 1.38255 * 119.96419 * 89.99946 * 11 10 8 13 13 C 1.38210 * 120.07497 * 179.97438 * 12 11 10 14 14 C 1.38414 * 119.99622 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.03777 * 179.97438 * 14 13 12 16 16 C 1.38645 * 119.93116 * 359.97438 * 14 13 12 17 17 F 1.35104 * 120.03815 * 180.02562 * 16 14 13 18 18 C 1.38209 * 119.96689 * 269.72731 * 11 10 8 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07995 * 120.00274 * 209.19622 * 22 21 20 24 24 C 1.38814 * 119.99924 * 29.19414 * 22 21 20 25 25 N 1.31623 * 119.99750 * 24.22945 * 24 22 21 26 26 Si 1.86799 * 120.00119 * 204.23697 * 24 22 21 27 27 H 1.48497 * 109.46863 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47014 * 299.99863 * 26 24 22 29 29 H 1.48505 * 109.47110 * 59.99717 * 26 24 22 30 30 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 31 31 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 33 33 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 34 34 H 1.09003 * 109.36332 * 185.33608 * 4 2 1 35 35 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 36 36 H 1.09002 * 109.47608 * 300.00323 * 10 8 7 37 37 H 1.09000 * 109.47224 * 60.00576 * 10 8 7 38 38 H 1.08004 * 119.96342 * 359.97438 * 12 11 10 39 39 H 1.08001 * 120.00357 * 180.02562 * 13 12 11 40 40 H 1.07999 * 120.00193 * 0.02562 * 18 11 10 41 41 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 42 42 H 1.08998 * 109.52068 * 58.60136 * 19 5 4 43 43 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 44 44 H 1.09001 * 109.58413 * 174.42141 * 20 19 5 45 45 H 0.96998 * 120.00078 * 5.78560 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2811 1.0996 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5320 -4.4440 2.1730 10 6 1.9498 -4.7178 4.0397 11 6 1.0887 -5.9299 4.2853 12 6 1.4389 -7.1487 3.7345 13 6 0.6511 -8.2620 3.9587 14 6 -0.4901 -8.1572 4.7349 15 9 -1.2611 -9.2448 4.9541 16 6 -0.8413 -6.9350 5.2872 17 9 -1.9545 -6.8304 6.0456 18 6 -0.0472 -5.8232 5.0654 19 6 2.2843 -2.8431 -0.0582 20 6 1.7740 -2.1421 -1.3211 21 7 2.0226 -0.6996 -1.1945 22 6 2.7052 -0.0210 -2.1685 23 1 3.2868 0.8520 -1.9119 24 6 2.6496 -0.4553 -3.4858 25 7 1.6267 -1.1728 -3.8995 26 14 4.0267 -0.0216 -4.6712 27 1 3.7312 -0.6007 -6.0063 28 1 4.1354 1.4550 -4.7846 29 1 5.3083 -0.5749 -4.1647 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5084 -0.8931 33 1 1.5987 -0.2724 2.1349 34 1 3.1241 -0.6413 1.2936 35 1 2.8564 -2.5412 2.8798 36 1 2.9859 -5.0294 3.9072 37 1 1.8796 -4.0430 4.8929 38 1 2.3290 -7.2310 3.1285 39 1 0.9259 -9.2136 3.5283 40 1 -0.3175 -4.8715 5.4984 41 1 2.0200 -3.8999 -0.0966 42 1 3.3678 -2.7410 0.0020 43 1 0.7043 -2.3203 -1.4310 44 1 2.3024 -2.5288 -2.1925 45 1 0.8724 -1.3274 -3.3095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947663698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:37 Heat of formation + Delta-G solvation = -110.625402 kcal Electronic energy + Delta-G solvation = -29083.658734 eV Core-core repulsion = 24736.290266 eV Total energy + Delta-G solvation = -4347.368468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.54761 -49.63473 -41.26738 -40.09861 -39.15098 -36.14844 -34.45459 -33.69428 -32.53106 -31.82864 -31.13630 -28.92193 -28.07745 -26.04352 -24.32728 -23.91856 -23.60533 -22.77586 -21.38147 -20.23102 -19.34257 -18.97593 -18.24856 -18.05119 -17.92173 -17.34622 -17.29437 -16.29088 -16.06718 -16.04420 -15.78552 -15.59794 -15.46961 -15.41546 -15.11898 -15.00122 -14.80791 -14.52374 -14.30192 -14.04362 -13.80757 -13.44030 -13.08708 -12.92981 -12.80569 -12.74079 -12.61330 -12.44668 -12.31722 -12.25840 -11.96217 -11.90804 -11.73740 -11.46733 -11.14699 -10.85167 -10.44873 -10.08273 -9.98970 -9.67702 -8.90760 -8.21202 -5.38151 -0.16825 -0.00139 1.59699 1.67045 1.71684 1.85435 2.08044 2.52385 2.67707 2.76804 3.25190 3.26009 3.45636 3.49980 3.60775 3.76120 3.96400 4.01580 4.05768 4.10620 4.23476 4.32617 4.41189 4.42331 4.58172 4.60546 4.64263 4.74246 4.75122 4.80075 4.85683 4.90742 5.01362 5.01870 5.05312 5.07071 5.19696 5.24319 5.28998 5.32588 5.55299 5.59097 5.72057 5.90081 6.41708 6.66966 7.09912 7.37235 7.81122 8.27038 9.03758 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021210 B = 0.002268 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.825796 B =12343.354672 C =12752.832290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.064 0.936 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.061 0.939 7 N -0.710 5.710 8 C 0.508 3.492 9 O -0.584 6.584 10 C -0.093 4.093 11 C -0.049 4.049 12 C -0.085 4.085 13 C -0.122 4.122 14 C 0.042 3.958 15 F -0.142 7.142 16 C 0.044 3.956 17 F -0.143 7.143 18 C -0.115 4.115 19 C -0.126 4.126 20 C 0.164 3.836 21 N -0.607 5.607 22 C -0.349 4.349 23 H 0.055 0.945 24 C -0.079 4.079 25 N -0.947 5.947 26 Si 1.114 2.886 27 H -0.297 1.297 28 H -0.275 1.275 29 H -0.278 1.278 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.418 0.582 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.049 0.951 42 H 0.064 0.936 43 H -0.006 1.006 44 H 0.040 0.960 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -8.656 23.026 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.082 0.918 4 C -0.156 4.156 5 C 0.057 3.943 6 H 0.079 0.921 7 N -0.362 5.362 8 C 0.296 3.704 9 O -0.464 6.464 10 C -0.132 4.132 11 C -0.050 4.050 12 C -0.103 4.103 13 C -0.141 4.141 14 C 0.022 3.978 15 F -0.121 7.121 16 C 0.024 3.976 17 F -0.122 7.122 18 C -0.134 4.134 19 C -0.167 4.167 20 C 0.037 3.963 21 N -0.330 5.330 22 C -0.479 4.479 23 H 0.073 0.927 24 C -0.275 4.275 25 N -0.589 5.589 26 Si 0.939 3.061 27 H -0.224 1.224 28 H -0.201 1.201 29 H -0.204 1.204 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.255 0.745 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.182 0.818 39 H 0.185 0.815 40 H 0.177 0.823 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.012 0.988 44 H 0.059 0.941 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.436 -9.193 21.093 23.433 hybrid contribution -1.451 0.055 1.285 1.940 sum 2.985 -9.138 22.378 24.356 Atomic orbital electron populations 1.22220 0.98278 1.00347 1.00617 1.20625 0.92046 0.95435 0.86529 0.91778 1.22027 1.01952 0.93154 0.98481 1.20615 0.98127 0.91896 0.83655 0.92081 1.46002 1.35614 1.27018 1.27573 1.21203 0.82192 0.80418 0.86625 1.90761 1.30269 1.66372 1.58982 1.20789 1.01534 0.94519 0.96314 1.19483 0.94689 0.95446 0.95408 1.21352 1.00572 0.90744 0.97611 1.21346 0.92495 1.02324 0.97926 1.18031 0.93923 0.82340 1.03482 1.91488 1.74485 1.52576 1.93575 1.17921 0.86974 0.94682 0.98036 1.91487 1.50167 1.96794 1.73703 1.21150 0.94301 0.97718 1.00217 1.22213 1.00513 0.98304 0.95620 1.20622 0.95307 0.84435 0.95896 1.44398 1.64953 1.02887 1.20782 1.20218 1.24713 1.13764 0.89198 0.92677 1.27194 1.02689 0.99755 0.97850 1.70899 1.06259 1.43723 1.37983 0.82871 0.73228 0.76337 0.73705 1.22377 1.20084 1.20359 0.94477 0.90446 0.95677 0.88831 0.90772 0.74492 0.83667 0.83999 0.81761 0.81515 0.82340 0.93252 0.91760 0.98824 0.94108 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 9.02 71.98 0.65 -5.05 16 2 C 0.16 6.08 3.27 44.83 0.15 6.23 16 3 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 4 C -0.12 -3.25 4.99 30.53 0.15 -3.09 16 5 C 0.16 4.81 2.21 45.02 0.10 4.91 16 6 H 0.06 2.17 5.93 -2.39 -0.01 2.16 16 7 N -0.71 -14.02 5.08 -442.39 -2.25 -16.27 16 8 C 0.51 10.69 7.79 87.66 0.68 11.38 16 9 O -0.58 -19.05 15.70 -3.02 -0.05 -19.09 16 10 C -0.09 -0.92 5.83 29.10 0.17 -0.75 16 11 C -0.05 -0.75 4.37 -19.87 -0.09 -0.84 16 12 C -0.08 -1.23 9.70 22.27 0.22 -1.01 16 13 C -0.12 -2.01 10.02 22.31 0.22 -1.79 16 14 C 0.04 0.92 7.31 22.41 0.16 1.08 16 15 F -0.14 -3.45 17.18 44.97 0.77 -2.67 16 16 C 0.04 0.98 7.31 22.41 0.16 1.14 16 17 F -0.14 -3.56 17.18 44.97 0.77 -2.79 16 18 C -0.12 -2.05 9.68 22.31 0.22 -1.84 16 19 C -0.13 -4.63 5.65 30.67 0.17 -4.46 16 20 C 0.16 7.81 4.29 86.36 0.37 8.18 16 21 N -0.61 -29.13 2.55 -676.05 -1.72 -30.85 16 22 C -0.35 -18.94 9.48 84.03 0.80 -18.14 16 23 H 0.06 2.94 7.94 -2.91 -0.02 2.92 16 24 C -0.08 -4.44 4.69 84.86 0.40 -4.05 16 25 N -0.95 -58.33 12.45 21.65 0.27 -58.06 16 26 Si 1.11 50.35 29.98 68.60 2.06 52.40 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 29 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 30 H 0.04 1.43 5.74 -2.39 -0.01 1.42 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.42 4.87 8.60 -92.71 -0.80 4.07 16 36 H 0.15 0.50 8.08 -2.39 -0.02 0.48 16 37 H 0.14 0.51 8.08 -2.39 -0.02 0.49 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 43 H -0.01 -0.32 7.23 -2.39 -0.02 -0.34 16 44 H 0.04 2.23 6.39 -2.39 -0.02 2.21 16 45 H 0.25 16.00 6.71 -92.71 -0.62 15.37 16 Total: -1.00 -77.17 372.71 4.77 -72.40 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.37 Total: 13.02 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.53 Total: -8.10 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.70 Total: -105.17 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 1.55 Total: -5.46 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.06 Total: 52.40 kcal Total: -77.17 4.77 -72.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947663698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.224 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds