Wall clock time and date at job start Tue Mar 31 2020 21:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.70107 * 2 1 4 4 C 1.53197 * 109.58806 * 239.64775 * 2 1 3 5 5 C 1.53037 * 109.31263 * 294.84596 * 4 2 1 6 6 H 1.09001 * 109.45663 * 58.63780 * 5 4 2 7 7 N 1.46494 * 109.46381 * 178.61243 * 5 4 2 8 8 C 1.34778 * 120.00614 * 205.00018 * 7 5 4 9 9 O 1.21282 * 119.99292 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00258 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.46857 * 180.02562 * 10 8 7 12 12 C 1.38268 * 119.96176 * 270.22764 * 11 10 8 13 13 C 1.38211 * 120.06670 * 180.27961 * 12 11 10 14 14 C 1.38414 * 120.00246 * 359.74601 * 13 12 11 15 15 F 1.35102 * 120.03476 * 179.97438 * 14 13 12 16 16 C 1.38651 * 119.92870 * 0.02562 * 14 13 12 17 17 F 1.35092 * 120.03389 * 180.02562 * 16 14 13 18 18 C 1.38210 * 119.96792 * 90.00218 * 11 10 8 19 19 C 1.53039 * 109.53721 * 298.63672 * 5 4 2 20 20 C 1.53193 * 109.31370 * 61.36397 * 19 5 4 21 21 N 1.46921 * 108.77600 * 305.36350 * 20 19 5 22 22 C 1.36937 * 120.63558 * 233.58893 * 21 20 19 23 23 H 1.07996 * 120.00648 * 151.84196 * 22 21 20 24 24 C 1.38815 * 119.99671 * 331.84464 * 22 21 20 25 25 N 1.31621 * 120.00048 * 343.07290 * 24 22 21 26 26 Si 1.86796 * 120.00287 * 163.07553 * 24 22 21 27 27 H 1.48505 * 109.46956 * 59.99419 * 26 24 22 28 28 H 1.48494 * 109.47319 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46935 * 300.00074 * 26 24 22 30 30 H 1.09003 * 109.47131 * 180.35263 * 1 2 3 31 31 H 1.09000 * 109.47373 * 300.35615 * 1 2 3 32 32 H 1.08999 * 109.47213 * 60.35485 * 1 2 3 33 33 H 1.09003 * 109.49552 * 174.89410 * 4 2 1 34 34 H 1.08999 * 109.49587 * 54.79520 * 4 2 1 35 35 H 0.97007 * 119.99447 * 25.00052 * 7 5 4 36 36 H 1.08999 * 109.46949 * 60.00042 * 10 8 7 37 37 H 1.09005 * 109.47274 * 300.00294 * 10 8 7 38 38 H 1.07992 * 119.96264 * 0.02932 * 12 11 10 39 39 H 1.07996 * 119.99882 * 179.77191 * 13 12 11 40 40 H 1.07999 * 119.99781 * 359.97438 * 18 11 10 41 41 H 1.09001 * 109.49366 * 181.31448 * 19 5 4 42 42 H 1.08998 * 109.49850 * 301.40851 * 19 5 4 43 43 H 1.09005 * 109.58427 * 185.57678 * 20 19 5 44 44 H 1.08997 * 109.58616 * 65.15314 * 20 19 5 45 45 H 0.96996 * 120.00496 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 1.6415 -2.2040 -1.1703 6 1 0.5566 -2.2814 -1.0991 7 7 2.1023 -2.8977 -2.3755 8 6 1.4751 -4.0159 -2.7910 9 8 0.5294 -4.4482 -2.1667 10 6 1.9496 -4.7297 -4.0304 11 6 1.0855 -5.9399 -4.2749 12 6 1.4286 -7.1575 -3.7167 13 6 0.6408 -8.2701 -3.9442 14 6 -0.4957 -8.1651 -4.7272 15 9 -1.2660 -9.2523 -4.9505 16 6 -0.8423 -6.9430 -5.2831 17 9 -1.9514 -6.8380 -6.0472 18 6 -0.0516 -5.8306 -5.0529 19 6 2.2801 -2.8463 0.0633 20 6 1.7692 -2.1410 1.3236 21 7 2.0225 -0.6996 1.1944 22 6 2.7044 -0.0208 2.1689 23 1 3.2759 0.8596 1.9147 24 6 2.6611 -0.4645 3.4835 25 7 1.7269 -1.3110 3.8620 26 14 3.9285 0.1397 4.7155 27 1 3.8399 1.6175 4.8324 28 1 3.6651 -0.4779 6.0400 29 1 5.2879 -0.2396 4.2535 30 1 -0.3633 -1.0277 0.0063 31 1 -0.3634 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 3.1297 -0.6502 -1.2914 34 1 1.6074 -0.2784 -2.1368 35 1 2.8590 -2.5521 -2.8745 36 1 2.9847 -5.0432 -3.8953 37 1 1.8823 -4.0570 -4.8854 38 1 2.3152 -7.2401 -3.1057 39 1 0.9118 -9.2214 -3.5107 40 1 -0.3206 -4.8781 -5.4850 41 1 2.0123 -3.9022 0.1035 42 1 3.3640 -2.7474 0.0051 43 1 2.2945 -2.5275 2.1970 44 1 0.6987 -2.3156 1.4315 45 1 1.6968 -1.6213 4.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947663699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:41 Heat of formation + Delta-G solvation = -87.699040 kcal Electronic energy + Delta-G solvation = -29033.263805 eV Core-core repulsion = 24686.889499 eV Total energy + Delta-G solvation = -4346.374306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.67329 -48.75078 -40.21939 -39.00105 -37.66681 -34.51244 -32.98968 -32.47166 -31.10684 -30.80834 -29.65946 -27.72581 -26.76318 -24.32899 -23.56528 -22.71128 -21.94868 -21.51867 -20.28428 -18.49767 -18.15196 -17.46054 -17.31732 -17.13650 -16.61474 -16.42114 -15.94252 -15.16270 -15.10278 -14.81826 -14.72164 -14.53068 -14.22154 -13.99331 -13.76158 -13.68207 -13.37394 -13.12306 -12.70889 -12.61573 -12.26939 -12.26553 -12.16191 -12.00203 -11.54848 -11.42896 -11.08253 -10.95937 -10.80106 -10.63416 -10.37266 -10.22461 -10.08290 -9.80659 -9.73919 -9.41641 -9.31406 -8.86935 -8.75237 -8.42752 -6.70303 -5.80006 -3.23165 0.61441 0.73269 2.70112 2.94387 3.36470 3.43152 3.43416 3.44612 3.53426 4.05107 4.18304 4.28940 4.47044 4.67714 4.77686 4.83031 4.98854 5.14156 5.26756 5.36411 5.38296 5.44613 5.52135 5.57895 5.60858 5.71645 5.76423 5.99770 6.03072 6.04503 6.23853 6.28693 6.39574 6.43506 6.46562 6.55795 6.63381 6.76424 6.85779 6.93312 7.13919 7.36601 7.63216 7.68967 7.78100 8.33835 8.44181 9.19761 9.83080 10.39877 11.28175 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.002255 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.506628 B =12411.762587 C =12831.719823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.065 0.935 4 C -0.132 4.132 5 C 0.149 3.851 6 H 0.085 0.915 7 N -0.724 5.724 8 C 0.509 3.491 9 O -0.531 6.531 10 C -0.105 4.105 11 C -0.043 4.043 12 C -0.084 4.084 13 C -0.123 4.123 14 C 0.064 3.936 15 F -0.131 7.131 16 C 0.068 3.932 17 F -0.130 7.130 18 C -0.112 4.112 19 C -0.146 4.146 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.255 4.255 23 H 0.065 0.935 24 C 0.004 3.996 25 N -0.900 5.900 26 Si 0.902 3.098 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.395 0.605 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.021 0.979 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 -9.358 -20.037 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.061 3.939 3 H 0.083 0.917 4 C -0.172 4.172 5 C 0.046 3.954 6 H 0.103 0.897 7 N -0.375 5.375 8 C 0.294 3.706 9 O -0.407 6.407 10 C -0.145 4.145 11 C -0.043 4.043 12 C -0.102 4.102 13 C -0.142 4.142 14 C 0.044 3.956 15 F -0.110 7.110 16 C 0.048 3.952 17 F -0.109 7.109 18 C -0.130 4.130 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.306 5.306 22 C -0.384 4.384 23 H 0.083 0.917 24 C -0.195 4.195 25 N -0.544 5.544 26 Si 0.732 3.268 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.211 1.211 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.228 0.772 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.039 0.961 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.998 -9.765 -19.412 21.753 hybrid contribution 0.555 0.231 0.319 0.680 sum 1.552 -9.533 -19.093 21.397 Atomic orbital electron populations 1.22302 0.98711 1.01143 1.00034 1.20443 0.91768 0.95101 0.86547 0.91662 1.22298 1.01124 0.94179 0.99586 1.21113 0.99832 0.91308 0.83157 0.89695 1.46339 1.34722 1.27134 1.29281 1.20341 0.83385 0.81080 0.85813 1.90762 1.27764 1.65265 1.56918 1.20734 1.00422 0.95262 0.98123 1.19195 0.94722 0.94489 0.95927 1.20964 1.00066 0.91110 0.98102 1.21046 0.93423 1.00995 0.98709 1.17699 0.93122 0.82595 1.02230 1.91523 1.74036 1.52105 1.93298 1.17594 0.86829 0.93755 0.97003 1.91525 1.49742 1.96682 1.72909 1.20900 0.94321 0.97642 1.00179 1.22562 1.00092 0.99116 0.96887 1.20735 0.97720 0.82916 0.93863 1.44153 1.63776 1.03429 1.19256 1.19112 1.21975 1.10673 0.86663 0.91724 1.25061 0.97635 0.99962 0.96830 1.70021 1.31650 1.35710 1.17005 0.86386 0.81547 0.78366 0.80530 1.20908 1.21673 1.21076 0.93204 0.92625 0.94528 0.91892 0.92634 0.77179 0.87319 0.87571 0.84188 0.83576 0.83794 0.92982 0.92718 0.89358 0.96099 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.02 37.16 0.34 -2.72 16 2 C 0.17 3.31 3.29 -67.60 -0.22 3.09 16 3 H 0.07 1.27 7.93 -51.92 -0.41 0.86 16 4 C -0.13 -2.06 5.02 -26.61 -0.13 -2.19 16 5 C 0.15 2.41 2.21 -67.89 -0.15 2.26 16 6 H 0.09 1.58 5.94 -51.93 -0.31 1.28 16 7 N -0.72 -8.74 5.08 -53.77 -0.27 -9.01 16 8 C 0.51 6.34 7.79 -10.99 -0.09 6.25 16 9 O -0.53 -9.19 15.70 5.56 0.09 -9.10 16 10 C -0.11 -0.80 5.83 -29.04 -0.17 -0.97 16 11 C -0.04 -0.40 4.37 -104.62 -0.46 -0.85 16 12 C -0.08 -0.74 9.70 -39.58 -0.38 -1.12 16 13 C -0.12 -1.12 10.02 -39.53 -0.40 -1.51 16 14 C 0.06 0.70 7.31 -39.36 -0.29 0.42 16 15 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 16 C 0.07 0.77 7.31 -39.36 -0.29 0.49 16 17 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 18 C -0.11 -1.11 9.68 -39.53 -0.38 -1.49 16 19 C -0.15 -2.77 5.65 -26.61 -0.15 -2.92 16 20 C 0.17 4.08 4.89 -3.71 -0.02 4.06 16 21 N -0.58 -13.90 2.70 -164.78 -0.44 -14.35 16 22 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 23 H 0.07 1.67 7.88 -52.49 -0.41 1.26 16 24 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 25 N -0.90 -25.74 11.20 55.49 0.62 -25.12 16 26 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.05 0.98 5.72 -51.93 -0.30 0.68 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.39 3.45 8.60 -40.82 -0.35 3.10 16 36 H 0.11 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.11 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 2.34 6.06 -51.93 -0.31 2.02 16 44 H 0.02 0.53 7.48 -51.93 -0.39 0.14 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -32.10 373.65 -8.62 -40.71 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.27 Total: 2.14 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -3.02 Total: -4.06 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.10 Total: -48.48 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.10 -8.62 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947663699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.987 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds