Wall clock time and date at job start Tue Mar 31 2020 21:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.70107 * 2 1 4 4 C 1.53197 * 109.58806 * 239.64775 * 2 1 3 5 5 C 1.53037 * 109.31263 * 294.84596 * 4 2 1 6 6 H 1.09001 * 109.45663 * 58.63780 * 5 4 2 7 7 N 1.46494 * 109.46381 * 178.61243 * 5 4 2 8 8 C 1.34778 * 120.00614 * 205.00018 * 7 5 4 9 9 O 1.21282 * 119.99292 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00258 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.46857 * 180.02562 * 10 8 7 12 12 C 1.38268 * 119.96176 * 270.22764 * 11 10 8 13 13 C 1.38211 * 120.06670 * 180.27961 * 12 11 10 14 14 C 1.38414 * 120.00246 * 359.74601 * 13 12 11 15 15 F 1.35102 * 120.03476 * 179.97438 * 14 13 12 16 16 C 1.38651 * 119.92870 * 0.02562 * 14 13 12 17 17 F 1.35092 * 120.03389 * 180.02562 * 16 14 13 18 18 C 1.38210 * 119.96792 * 90.00218 * 11 10 8 19 19 C 1.53039 * 109.53721 * 298.63672 * 5 4 2 20 20 C 1.53193 * 109.31370 * 61.36397 * 19 5 4 21 21 N 1.46921 * 108.77600 * 305.36350 * 20 19 5 22 22 C 1.36937 * 120.63558 * 233.58893 * 21 20 19 23 23 H 1.07996 * 120.00648 * 151.84196 * 22 21 20 24 24 C 1.38815 * 119.99671 * 331.84464 * 22 21 20 25 25 N 1.31621 * 120.00048 * 343.07290 * 24 22 21 26 26 Si 1.86796 * 120.00287 * 163.07553 * 24 22 21 27 27 H 1.48505 * 109.46956 * 59.99419 * 26 24 22 28 28 H 1.48494 * 109.47319 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46935 * 300.00074 * 26 24 22 30 30 H 1.09003 * 109.47131 * 180.35263 * 1 2 3 31 31 H 1.09000 * 109.47373 * 300.35615 * 1 2 3 32 32 H 1.08999 * 109.47213 * 60.35485 * 1 2 3 33 33 H 1.09003 * 109.49552 * 174.89410 * 4 2 1 34 34 H 1.08999 * 109.49587 * 54.79520 * 4 2 1 35 35 H 0.97007 * 119.99447 * 25.00052 * 7 5 4 36 36 H 1.08999 * 109.46949 * 60.00042 * 10 8 7 37 37 H 1.09005 * 109.47274 * 300.00294 * 10 8 7 38 38 H 1.07992 * 119.96264 * 0.02932 * 12 11 10 39 39 H 1.07996 * 119.99882 * 179.77191 * 13 12 11 40 40 H 1.07999 * 119.99781 * 359.97438 * 18 11 10 41 41 H 1.09001 * 109.49366 * 181.31448 * 19 5 4 42 42 H 1.08998 * 109.49850 * 301.40851 * 19 5 4 43 43 H 1.09005 * 109.58427 * 185.57678 * 20 19 5 44 44 H 1.08997 * 109.58616 * 65.15314 * 20 19 5 45 45 H 0.96996 * 120.00496 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 1.6415 -2.2040 -1.1703 6 1 0.5566 -2.2814 -1.0991 7 7 2.1023 -2.8977 -2.3755 8 6 1.4751 -4.0159 -2.7910 9 8 0.5294 -4.4482 -2.1667 10 6 1.9496 -4.7297 -4.0304 11 6 1.0855 -5.9399 -4.2749 12 6 1.4286 -7.1575 -3.7167 13 6 0.6408 -8.2701 -3.9442 14 6 -0.4957 -8.1651 -4.7272 15 9 -1.2660 -9.2523 -4.9505 16 6 -0.8423 -6.9430 -5.2831 17 9 -1.9514 -6.8380 -6.0472 18 6 -0.0516 -5.8306 -5.0529 19 6 2.2801 -2.8463 0.0633 20 6 1.7692 -2.1410 1.3236 21 7 2.0225 -0.6996 1.1944 22 6 2.7044 -0.0208 2.1689 23 1 3.2759 0.8596 1.9147 24 6 2.6611 -0.4645 3.4835 25 7 1.7269 -1.3110 3.8620 26 14 3.9285 0.1397 4.7155 27 1 3.8399 1.6175 4.8324 28 1 3.6651 -0.4779 6.0400 29 1 5.2879 -0.2396 4.2535 30 1 -0.3633 -1.0277 0.0063 31 1 -0.3634 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 3.1297 -0.6502 -1.2914 34 1 1.6074 -0.2784 -2.1368 35 1 2.8590 -2.5521 -2.8745 36 1 2.9847 -5.0432 -3.8953 37 1 1.8823 -4.0570 -4.8854 38 1 2.3152 -7.2401 -3.1057 39 1 0.9118 -9.2214 -3.5107 40 1 -0.3206 -4.8781 -5.4850 41 1 2.0123 -3.9022 0.1035 42 1 3.3640 -2.7474 0.0051 43 1 2.2945 -2.5275 2.1970 44 1 0.6987 -2.3156 1.4315 45 1 1.6968 -1.6213 4.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947663699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:40 Heat of formation + Delta-G solvation = -106.840365 kcal Electronic energy + Delta-G solvation = -29034.093835 eV Core-core repulsion = 24686.889499 eV Total energy + Delta-G solvation = -4347.204336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.53088 -49.61805 -41.19480 -39.99665 -39.01581 -35.94399 -34.30315 -33.65068 -32.40657 -31.81230 -31.28272 -28.88638 -28.00203 -26.12078 -24.30641 -23.90619 -23.52970 -22.69300 -21.32364 -20.03631 -19.04078 -18.76557 -18.22392 -18.00418 -17.82289 -17.32303 -17.26304 -16.54569 -16.07730 -16.04745 -15.61675 -15.56067 -15.48723 -15.38153 -14.99094 -14.79780 -14.56543 -14.39074 -14.15723 -14.02097 -13.84111 -13.13175 -13.07639 -12.91923 -12.87407 -12.70639 -12.61018 -12.52320 -12.27295 -12.23442 -12.02053 -11.98813 -11.73804 -11.44979 -11.10563 -10.78596 -10.52639 -10.06077 -9.89705 -9.65356 -8.65859 -7.83908 -5.29289 -0.14735 0.02065 1.48761 1.50601 1.57364 1.77061 2.12647 2.53438 2.57033 2.78815 3.27927 3.31740 3.48156 3.63115 3.65027 3.86814 4.00834 4.10227 4.13096 4.15078 4.34381 4.44650 4.49421 4.55397 4.63264 4.72905 4.76544 4.81859 4.86153 4.86807 4.90638 4.99154 5.03459 5.13821 5.19299 5.20075 5.35058 5.36521 5.47875 5.54371 5.67174 5.70271 5.74186 5.79392 6.42851 6.73077 7.17990 7.43391 7.90415 8.42267 9.22289 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.002255 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.506628 B =12411.762587 C =12831.719823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.068 0.932 4 C -0.117 4.117 5 C 0.161 3.839 6 H 0.059 0.941 7 N -0.710 5.710 8 C 0.507 3.493 9 O -0.585 6.585 10 C -0.093 4.093 11 C -0.049 4.049 12 C -0.085 4.085 13 C -0.123 4.123 14 C 0.042 3.958 15 F -0.143 7.143 16 C 0.044 3.956 17 F -0.143 7.143 18 C -0.115 4.115 19 C -0.130 4.130 20 C 0.184 3.816 21 N -0.599 5.599 22 C -0.257 4.257 23 H 0.072 0.928 24 C -0.053 4.053 25 N -0.937 5.937 26 Si 0.965 3.035 27 H -0.275 1.275 28 H -0.300 1.300 29 H -0.276 1.276 30 H 0.033 0.967 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.417 0.583 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.051 0.949 44 H -0.014 1.014 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 -8.412 -22.487 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.087 0.913 4 C -0.156 4.156 5 C 0.056 3.944 6 H 0.077 0.923 7 N -0.362 5.362 8 C 0.295 3.705 9 O -0.465 6.465 10 C -0.132 4.132 11 C -0.050 4.050 12 C -0.103 4.103 13 C -0.141 4.141 14 C 0.022 3.978 15 F -0.121 7.121 16 C 0.024 3.976 17 F -0.122 7.122 18 C -0.134 4.134 19 C -0.171 4.171 20 C 0.058 3.942 21 N -0.322 5.322 22 C -0.388 4.388 23 H 0.090 0.910 24 C -0.248 4.248 25 N -0.583 5.583 26 Si 0.794 3.206 27 H -0.201 1.201 28 H -0.227 1.227 29 H -0.202 1.202 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.255 0.745 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.182 0.818 39 H 0.185 0.815 40 H 0.177 0.823 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.004 0.996 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.548 -8.791 -21.934 23.895 hybrid contribution -0.264 -0.047 1.066 1.099 sum 3.284 -8.838 -20.868 22.899 Atomic orbital electron populations 1.22189 0.98466 1.00160 1.00433 1.20731 0.91989 0.95554 0.86571 0.91333 1.22113 1.01937 0.93015 0.98551 1.20646 0.98074 0.92019 0.83655 0.92313 1.46023 1.35374 1.26951 1.27852 1.21192 0.82264 0.80511 0.86572 1.90763 1.30232 1.66563 1.58918 1.20790 1.01463 0.94493 0.96422 1.19495 0.94649 0.95465 0.95390 1.21353 1.00561 0.90782 0.97568 1.21341 0.92569 1.02304 0.97908 1.18029 0.94009 0.82372 1.03383 1.91485 1.74510 1.52609 1.93530 1.17914 0.87168 0.94658 0.97883 1.91483 1.50499 1.96790 1.73382 1.21149 0.94291 0.97694 1.00228 1.22300 1.00349 0.98211 0.96195 1.20412 0.95210 0.83718 0.94910 1.44372 1.64097 1.03618 1.20080 1.19503 1.21532 1.10441 0.87297 0.91038 1.25819 0.99466 1.00787 0.98754 1.70201 1.33669 1.37657 1.16800 0.85374 0.79462 0.77979 0.77821 1.20099 1.22654 1.20197 0.94823 0.95557 0.90719 0.90611 0.89013 0.74546 0.83705 0.84024 0.81790 0.81539 0.82340 0.93744 0.91947 0.93097 0.99568 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 9.02 71.98 0.65 -5.03 16 2 C 0.16 5.95 3.29 44.98 0.15 6.10 16 3 H 0.07 2.53 7.93 -2.38 -0.02 2.51 16 4 C -0.12 -3.23 5.02 30.67 0.15 -3.08 16 5 C 0.16 4.86 2.21 45.02 0.10 4.96 16 6 H 0.06 2.15 5.94 -2.39 -0.01 2.13 16 7 N -0.71 -14.36 5.08 -442.42 -2.25 -16.60 16 8 C 0.51 10.96 7.79 87.66 0.68 11.64 16 9 O -0.59 -19.49 15.70 -3.03 -0.05 -19.54 16 10 C -0.09 -0.96 5.83 29.10 0.17 -0.79 16 11 C -0.05 -0.77 4.37 -19.86 -0.09 -0.86 16 12 C -0.08 -1.26 9.70 22.27 0.22 -1.04 16 13 C -0.12 -2.06 10.02 22.31 0.22 -1.83 16 14 C 0.04 0.92 7.31 22.41 0.16 1.09 16 15 F -0.14 -3.48 17.18 44.97 0.77 -2.71 16 16 C 0.04 0.99 7.31 22.41 0.16 1.15 16 17 F -0.14 -3.59 17.18 44.97 0.77 -2.82 16 18 C -0.11 -2.09 9.68 22.30 0.22 -1.87 16 19 C -0.13 -4.87 5.65 30.67 0.17 -4.70 16 20 C 0.18 8.95 4.89 86.36 0.42 9.37 16 21 N -0.60 -28.71 2.70 -675.23 -1.82 -30.53 16 22 C -0.26 -13.66 9.58 84.03 0.81 -12.86 16 23 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 24 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 25 N -0.94 -55.89 11.20 21.65 0.24 -55.65 16 26 Si 0.97 44.29 29.59 68.60 2.03 46.32 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 30 H 0.03 1.34 5.72 -2.39 -0.01 1.32 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.42 4.98 8.60 -92.70 -0.80 4.18 16 36 H 0.15 0.56 8.09 -2.39 -0.02 0.54 16 37 H 0.14 0.56 8.08 -2.38 -0.02 0.54 16 38 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 39 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.05 2.83 6.06 -2.38 -0.01 2.82 16 44 H -0.01 -0.75 7.48 -2.39 -0.02 -0.77 16 45 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -75.33 373.65 4.54 -70.79 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.22 Total: 11.01 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 4.62 Total: -0.26 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -3.83 Total: -102.79 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 1.55 Total: -5.52 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -75.33 4.54 -70.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947663699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.050 kcal (2) G-P(sol) polarization free energy of solvation -75.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds