Wall clock time and date at job start Tue Mar 31 2020 21:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.58683 * 2 1 4 4 C 1.53190 * 109.59022 * 239.55280 * 2 1 3 5 5 C 1.53034 * 109.31509 * 185.56419 * 4 2 1 6 6 H 1.09005 * 109.46527 * 301.37592 * 5 4 2 7 7 N 1.46504 * 109.46038 * 181.40439 * 5 4 2 8 8 C 1.34771 * 119.99909 * 154.97536 * 7 5 4 9 9 O 1.21284 * 120.00690 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99776 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47094 * 180.02562 * 10 8 7 12 12 C 1.38210 * 119.99879 * 265.22833 * 11 10 8 13 13 C 1.38426 * 119.99983 * 180.31997 * 12 11 10 14 14 F 1.35096 * 119.99929 * 179.72032 * 13 12 11 15 15 C 1.38478 * 119.99862 * 359.45314 * 13 12 11 16 16 C 1.38155 * 119.99853 * 0.26983 * 15 13 12 17 17 C 1.38424 * 120.00241 * 85.00026 * 11 10 8 18 18 F 1.35098 * 120.00189 * 359.97380 * 17 11 10 19 19 C 1.53035 * 109.52798 * 61.39111 * 5 4 2 20 20 C 1.53197 * 109.31280 * 298.62531 * 19 5 4 21 21 N 1.46931 * 109.58293 * 120.28107 * 2 1 3 22 22 C 1.36930 * 120.63330 * 353.41616 * 21 2 1 23 23 H 1.08003 * 119.99700 * 29.50469 * 22 21 2 24 24 C 1.38817 * 120.00135 * 209.50455 * 22 21 2 25 25 N 1.31613 * 120.00124 * 15.62254 * 24 22 21 26 26 Si 1.86808 * 119.99804 * 195.61996 * 24 22 21 27 27 H 1.48497 * 109.46738 * 94.72234 * 26 24 22 28 28 H 1.48499 * 109.47065 * 214.72130 * 26 24 22 29 29 H 1.48498 * 109.46943 * 334.72379 * 26 24 22 30 30 H 1.08995 * 109.47446 * 299.72034 * 1 2 3 31 31 H 1.09000 * 109.47104 * 59.72143 * 1 2 3 32 32 H 1.08998 * 109.47270 * 179.71679 * 1 2 3 33 33 H 1.09004 * 109.48071 * 65.62387 * 4 2 1 34 34 H 1.09000 * 109.50960 * 305.53045 * 4 2 1 35 35 H 0.97004 * 120.00026 * 334.97292 * 7 5 4 36 36 H 1.08993 * 109.47504 * 59.99790 * 10 8 7 37 37 H 1.09003 * 109.47452 * 299.99907 * 10 8 7 38 38 H 1.08001 * 120.00328 * 0.06834 * 12 11 10 39 39 H 1.08004 * 119.99777 * 180.30027 * 15 13 12 40 40 H 1.08008 * 119.99692 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.49959 * 58.57886 * 19 5 4 42 42 H 1.08998 * 109.50347 * 178.67655 * 19 5 4 43 43 H 1.08996 * 109.58999 * 174.41950 * 20 19 5 44 44 H 1.09000 * 109.58740 * 294.84872 * 20 19 5 45 45 H 0.97002 * 119.99978 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7313 -1.2442 5 6 3.5675 -0.8495 -1.1689 6 1 4.0060 0.1460 -1.0992 7 7 4.0652 -1.5188 -2.3733 8 6 5.3292 -1.3051 -2.7893 9 8 6.0545 -0.5584 -2.1670 10 6 5.8414 -1.9940 -4.0279 11 6 7.2722 -1.5891 -4.2727 12 6 7.5573 -0.5437 -5.1307 13 6 8.8719 -0.1760 -5.3607 14 9 9.1509 0.8421 -6.2037 15 6 9.9007 -0.8481 -4.7223 16 6 9.6153 -1.8893 -3.8603 17 6 8.3006 -2.2609 -3.6346 18 9 8.0216 -3.2794 -2.7919 19 6 3.9569 -1.6656 0.0657 20 6 3.4650 -0.9452 1.3251 21 7 2.0224 -0.6980 1.1954 22 6 1.1535 -1.1107 2.1700 23 1 0.1381 -1.3733 1.9122 24 6 1.5777 -1.1914 3.4893 25 7 2.6900 -0.5938 3.8607 26 14 0.5698 -2.1483 4.7376 27 1 1.1011 -3.5306 4.8475 28 1 0.6548 -1.4786 6.0603 29 1 -0.8475 -2.1963 4.2971 30 1 -0.3634 0.5094 0.8924 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0276 -0.0051 33 1 1.7659 -0.1700 -2.1364 34 1 1.6031 -1.7274 -1.2887 35 1 3.4851 -2.1158 -2.8713 36 1 5.2304 -1.7056 -4.8831 37 1 5.7883 -3.0742 -3.8912 38 1 6.7548 -0.0164 -5.6249 39 1 10.9261 -0.5580 -4.8980 40 1 10.4177 -2.4138 -3.3627 41 1 3.4983 -2.6528 0.0088 42 1 5.0411 -1.7695 0.1062 43 1 3.6517 -1.5689 2.1993 44 1 3.9902 0.0039 1.4319 45 1 2.9862 -0.6499 4.7827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947668200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:44 Heat of formation + Delta-G solvation = -87.368119 kcal Electronic energy + Delta-G solvation = -29234.088281 eV Core-core repulsion = 24887.728325 eV Total energy + Delta-G solvation = -4346.359956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.18450 -49.11525 -40.05908 -38.89973 -37.59127 -34.59059 -33.32191 -32.40126 -31.34608 -30.45940 -29.63029 -27.90522 -26.33358 -24.76674 -23.38966 -22.67562 -21.91468 -20.95292 -20.06229 -19.22783 -17.93604 -17.50735 -17.47170 -17.13179 -16.29492 -15.95824 -15.81160 -15.50978 -15.06813 -15.02251 -14.65510 -14.52176 -13.98554 -13.81522 -13.72008 -13.59188 -13.39645 -13.21122 -12.97494 -12.80027 -12.68276 -12.10501 -12.04430 -11.60030 -11.36249 -11.22441 -11.10717 -10.91432 -10.88935 -10.66937 -10.30346 -10.15243 -10.04295 -9.90344 -9.73247 -9.50842 -9.28052 -8.77642 -8.71527 -8.41808 -6.63653 -5.76352 -3.20650 0.65389 0.72150 2.73145 2.95889 3.37522 3.43637 3.44971 3.46410 3.83992 3.92852 4.14186 4.32082 4.49539 4.62433 4.80445 4.85085 4.99280 5.13700 5.27132 5.37579 5.39787 5.44554 5.58808 5.61860 5.67796 5.75245 5.77278 5.81525 5.99339 6.15062 6.25008 6.31119 6.41684 6.42374 6.47998 6.51099 6.64481 6.80304 6.89160 7.03259 7.09583 7.39029 7.65723 7.71137 7.83391 8.36317 8.47841 9.23106 9.86752 10.44049 11.32293 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.002440 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.695333 B =11472.441626 C =12105.556001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.133 4.133 5 C 0.151 3.849 6 H 0.081 0.919 7 N -0.723 5.723 8 C 0.512 3.488 9 O -0.531 6.531 10 C -0.106 4.106 11 C -0.068 4.068 12 C -0.113 4.113 13 C 0.089 3.911 14 F -0.136 7.136 15 C -0.126 4.126 16 C -0.124 4.124 17 C 0.107 3.893 18 F -0.130 7.130 19 C -0.146 4.146 20 C 0.175 3.825 21 N -0.588 5.588 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.003 3.997 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.372 -3.616 -21.115 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.099 0.901 7 N -0.373 5.373 8 C 0.297 3.703 9 O -0.407 6.407 10 C -0.146 4.146 11 C -0.069 4.069 12 C -0.132 4.132 13 C 0.069 3.931 14 F -0.115 7.115 15 C -0.145 4.145 16 C -0.143 4.143 17 C 0.087 3.913 18 F -0.108 7.108 19 C -0.187 4.187 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.038 0.962 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.941 -3.044 -20.467 22.956 hybrid contribution -0.653 -0.798 0.508 1.150 sum 9.288 -3.842 -19.959 22.347 Atomic orbital electron populations 1.21791 0.95767 1.01368 1.00355 1.20356 0.93069 0.93570 0.86659 0.95584 1.22374 0.93672 1.01621 0.99644 1.21052 0.94217 0.96724 0.83242 0.90104 1.46295 1.13053 1.48652 1.29342 1.20259 0.82277 0.82135 0.85668 1.90750 1.56024 1.37021 1.56945 1.20666 0.92629 1.02864 0.98475 1.19146 0.94271 0.96228 0.97280 1.20843 0.95631 0.97099 0.99615 1.17573 0.93587 0.88549 0.93372 1.91516 1.94414 1.56974 1.68594 1.20971 0.99580 0.96334 0.97590 1.20965 0.95293 0.98364 0.99664 1.17485 0.93318 0.88395 0.92062 1.91530 1.94423 1.56459 1.68428 1.22563 0.99733 0.99570 0.96803 1.20738 0.83236 0.97251 0.93881 1.44171 1.02975 1.64976 1.18977 1.19179 0.95068 1.37752 0.86134 0.91220 1.25111 0.97902 0.99584 0.97008 1.70026 1.24023 1.43764 1.16759 0.86305 0.79777 0.79785 0.81081 1.21558 1.21823 1.20409 0.91831 0.94330 0.92802 0.92725 0.91790 0.77145 0.87226 0.87305 0.83800 0.83746 0.83581 0.92684 0.92926 0.89346 0.96191 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.95 37.15 0.30 -2.16 16 2 C 0.17 3.44 3.50 -67.60 -0.24 3.21 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.17 4.84 -26.62 -0.13 -2.30 16 5 C 0.15 2.58 2.42 -67.89 -0.16 2.42 16 6 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 7 N -0.72 -9.61 5.08 -53.77 -0.27 -9.88 16 8 C 0.51 7.16 7.79 -10.99 -0.09 7.07 16 9 O -0.53 -9.89 15.70 5.55 0.09 -9.81 16 10 C -0.11 -1.01 5.60 -29.03 -0.16 -1.17 16 11 C -0.07 -0.73 4.38 -104.56 -0.46 -1.19 16 12 C -0.11 -1.12 9.66 -39.52 -0.38 -1.50 16 13 C 0.09 0.88 7.30 -39.42 -0.29 0.59 16 14 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 15 C -0.13 -1.09 10.02 -39.52 -0.40 -1.49 16 16 C -0.12 -1.15 10.02 -39.52 -0.40 -1.54 16 17 C 0.11 1.22 7.24 -39.43 -0.29 0.93 16 18 F -0.13 -1.65 16.56 2.25 0.04 -1.61 16 19 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 20 C 0.18 4.25 5.29 -3.70 -0.02 4.23 16 21 N -0.59 -14.33 2.99 -164.77 -0.49 -14.82 16 22 C -0.25 -6.67 8.58 -15.06 -0.13 -6.80 16 23 H 0.07 1.80 6.23 -52.48 -0.33 1.47 16 24 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 25 N -0.90 -26.23 11.22 55.49 0.62 -25.60 16 26 Si 0.90 21.55 29.58 -169.99 -5.03 16.53 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.40 3.93 8.60 -40.82 -0.35 3.57 16 36 H 0.11 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.11 0.87 7.79 -51.93 -0.40 0.47 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.09 2.40 6.12 -51.93 -0.32 2.08 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -32.46 373.79 -8.80 -41.26 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.36 Total: 2.45 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -3.07 Total: -2.77 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.14 Total: -50.30 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.08 Total: -2.99 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.46 -8.80 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947668200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.105 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds