Wall clock time and date at job start Tue Mar 31 2020 21:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.58683 * 2 1 4 4 C 1.53190 * 109.59022 * 239.55280 * 2 1 3 5 5 C 1.53034 * 109.31509 * 185.56419 * 4 2 1 6 6 H 1.09005 * 109.46527 * 301.37592 * 5 4 2 7 7 N 1.46504 * 109.46038 * 181.40439 * 5 4 2 8 8 C 1.34771 * 119.99909 * 154.97536 * 7 5 4 9 9 O 1.21284 * 120.00690 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99776 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47094 * 180.02562 * 10 8 7 12 12 C 1.38210 * 119.99879 * 265.22833 * 11 10 8 13 13 C 1.38426 * 119.99983 * 180.31997 * 12 11 10 14 14 F 1.35096 * 119.99929 * 179.72032 * 13 12 11 15 15 C 1.38478 * 119.99862 * 359.45314 * 13 12 11 16 16 C 1.38155 * 119.99853 * 0.26983 * 15 13 12 17 17 C 1.38424 * 120.00241 * 85.00026 * 11 10 8 18 18 F 1.35098 * 120.00189 * 359.97380 * 17 11 10 19 19 C 1.53035 * 109.52798 * 61.39111 * 5 4 2 20 20 C 1.53197 * 109.31280 * 298.62531 * 19 5 4 21 21 N 1.46931 * 109.58293 * 120.28107 * 2 1 3 22 22 C 1.36930 * 120.63330 * 353.41616 * 21 2 1 23 23 H 1.08003 * 119.99700 * 29.50469 * 22 21 2 24 24 C 1.38817 * 120.00135 * 209.50455 * 22 21 2 25 25 N 1.31613 * 120.00124 * 15.62254 * 24 22 21 26 26 Si 1.86808 * 119.99804 * 195.61996 * 24 22 21 27 27 H 1.48497 * 109.46738 * 94.72234 * 26 24 22 28 28 H 1.48499 * 109.47065 * 214.72130 * 26 24 22 29 29 H 1.48498 * 109.46943 * 334.72379 * 26 24 22 30 30 H 1.08995 * 109.47446 * 299.72034 * 1 2 3 31 31 H 1.09000 * 109.47104 * 59.72143 * 1 2 3 32 32 H 1.08998 * 109.47270 * 179.71679 * 1 2 3 33 33 H 1.09004 * 109.48071 * 65.62387 * 4 2 1 34 34 H 1.09000 * 109.50960 * 305.53045 * 4 2 1 35 35 H 0.97004 * 120.00026 * 334.97292 * 7 5 4 36 36 H 1.08993 * 109.47504 * 59.99790 * 10 8 7 37 37 H 1.09003 * 109.47452 * 299.99907 * 10 8 7 38 38 H 1.08001 * 120.00328 * 0.06834 * 12 11 10 39 39 H 1.08004 * 119.99777 * 180.30027 * 15 13 12 40 40 H 1.08008 * 119.99692 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.49959 * 58.57886 * 19 5 4 42 42 H 1.08998 * 109.50347 * 178.67655 * 19 5 4 43 43 H 1.08996 * 109.58999 * 174.41950 * 20 19 5 44 44 H 1.09000 * 109.58740 * 294.84872 * 20 19 5 45 45 H 0.97002 * 119.99978 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7313 -1.2442 5 6 3.5675 -0.8495 -1.1689 6 1 4.0060 0.1460 -1.0992 7 7 4.0652 -1.5188 -2.3733 8 6 5.3292 -1.3051 -2.7893 9 8 6.0545 -0.5584 -2.1670 10 6 5.8414 -1.9940 -4.0279 11 6 7.2722 -1.5891 -4.2727 12 6 7.5573 -0.5437 -5.1307 13 6 8.8719 -0.1760 -5.3607 14 9 9.1509 0.8421 -6.2037 15 6 9.9007 -0.8481 -4.7223 16 6 9.6153 -1.8893 -3.8603 17 6 8.3006 -2.2609 -3.6346 18 9 8.0216 -3.2794 -2.7919 19 6 3.9569 -1.6656 0.0657 20 6 3.4650 -0.9452 1.3251 21 7 2.0224 -0.6980 1.1954 22 6 1.1535 -1.1107 2.1700 23 1 0.1381 -1.3733 1.9122 24 6 1.5777 -1.1914 3.4893 25 7 2.6900 -0.5938 3.8607 26 14 0.5698 -2.1483 4.7376 27 1 1.1011 -3.5306 4.8475 28 1 0.6548 -1.4786 6.0603 29 1 -0.8475 -2.1963 4.2971 30 1 -0.3634 0.5094 0.8924 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0276 -0.0051 33 1 1.7659 -0.1700 -2.1364 34 1 1.6031 -1.7274 -1.2887 35 1 3.4851 -2.1158 -2.8713 36 1 5.2304 -1.7056 -4.8831 37 1 5.7883 -3.0742 -3.8912 38 1 6.7548 -0.0164 -5.6249 39 1 10.9261 -0.5580 -4.8980 40 1 10.4177 -2.4138 -3.3627 41 1 3.4983 -2.6528 0.0088 42 1 5.0411 -1.7695 0.1062 43 1 3.6517 -1.5689 2.1993 44 1 3.9902 0.0039 1.4319 45 1 2.9862 -0.6499 4.7827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947668200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:43 Heat of formation + Delta-G solvation = -106.887706 kcal Electronic energy + Delta-G solvation = -29234.934714 eV Core-core repulsion = 24887.728325 eV Total energy + Delta-G solvation = -4347.206389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98949 -49.94876 -41.16709 -39.87499 -39.05237 -36.08950 -34.29227 -34.05496 -32.91775 -31.43945 -31.07782 -28.89380 -27.83911 -26.59528 -24.22986 -23.85905 -23.31099 -22.27865 -21.39412 -20.83078 -18.75337 -18.45603 -18.28124 -18.22525 -17.95774 -17.23684 -16.83328 -16.70040 -16.35572 -16.12101 -15.73812 -15.52708 -15.41134 -15.31984 -15.02123 -14.73241 -14.63174 -14.44837 -14.34469 -13.97903 -13.70189 -13.33151 -12.97032 -12.89966 -12.85466 -12.73090 -12.64136 -12.60845 -12.36387 -12.07499 -12.04065 -11.84367 -11.71894 -11.49579 -11.33035 -10.90275 -10.55735 -10.13659 -9.99149 -9.55806 -8.64990 -7.83773 -5.30622 -0.10874 0.00529 1.47195 1.48462 1.57443 1.65743 2.08936 2.47570 2.52615 3.10365 3.18881 3.32406 3.41602 3.59009 3.62427 3.84293 3.95847 4.01684 4.06922 4.11385 4.28258 4.36224 4.39889 4.47983 4.61842 4.70188 4.74491 4.75805 4.85763 4.92568 4.96575 4.97816 5.01099 5.07952 5.09807 5.12138 5.16969 5.39067 5.49365 5.56031 5.59189 5.70739 5.73152 5.75928 6.43122 6.62426 7.16893 7.32264 7.88911 8.42044 9.23680 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020245 B = 0.002440 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.695333 B =11472.441626 C =12105.556001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.009 0.991 4 C -0.116 4.116 5 C 0.162 3.838 6 H 0.053 0.947 7 N -0.709 5.709 8 C 0.508 3.492 9 O -0.583 6.583 10 C -0.096 4.096 11 C -0.082 4.082 12 C -0.117 4.117 13 C 0.076 3.924 14 F -0.141 7.141 15 C -0.122 4.122 16 C -0.126 4.126 17 C 0.080 3.920 18 F -0.144 7.144 19 C -0.130 4.130 20 C 0.184 3.816 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.082 0.918 24 C -0.058 4.058 25 N -0.942 5.942 26 Si 0.964 3.036 27 H -0.289 1.289 28 H -0.301 1.301 29 H -0.262 1.262 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.417 0.583 36 H 0.151 0.849 37 H 0.127 0.873 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.052 0.948 44 H -0.016 1.016 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.105 -4.710 -24.183 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.027 0.973 4 C -0.156 4.156 5 C 0.057 3.943 6 H 0.071 0.929 7 N -0.360 5.360 8 C 0.296 3.704 9 O -0.463 6.463 10 C -0.135 4.135 11 C -0.083 4.083 12 C -0.135 4.135 13 C 0.056 3.944 14 F -0.119 7.119 15 C -0.140 4.140 16 C -0.145 4.145 17 C 0.061 3.939 18 F -0.122 7.122 19 C -0.170 4.170 20 C 0.057 3.943 21 N -0.327 5.327 22 C -0.378 4.378 23 H 0.099 0.901 24 C -0.253 4.253 25 N -0.589 5.589 26 Si 0.793 3.207 27 H -0.216 1.216 28 H -0.228 1.228 29 H -0.186 1.186 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.255 0.745 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.183 0.817 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.002 0.998 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.630 -4.168 -23.605 25.476 hybrid contribution -0.197 -0.377 1.411 1.473 sum 8.432 -4.545 -22.194 24.173 Atomic orbital electron populations 1.21709 0.93809 1.01749 1.01130 1.20662 0.94771 0.92834 0.86567 0.97333 1.22169 0.92310 1.02317 0.98761 1.20616 0.95029 0.95033 0.83581 0.92889 1.45988 1.13469 1.48578 1.27990 1.21079 0.81649 0.81268 0.86422 1.90738 1.57309 1.39417 1.58829 1.20708 0.92321 1.03276 0.97218 1.19335 0.94833 0.96575 0.97580 1.21074 0.96245 0.96782 0.99419 1.17808 0.94185 0.88715 0.93647 1.91506 1.94460 1.57190 1.68761 1.21268 1.00670 0.95501 0.96566 1.21239 0.95203 0.98458 0.99587 1.17889 0.94589 0.88810 0.92625 1.91488 1.94596 1.57125 1.69021 1.22295 0.98722 0.99671 0.96317 1.20423 0.83775 0.95256 0.94825 1.44434 1.02523 1.65692 1.20041 1.19576 0.95581 1.36086 0.86521 0.90094 1.25900 0.99183 1.01113 0.99095 1.70207 1.26108 1.45989 1.16563 0.85289 0.79159 0.77983 0.78295 1.21644 1.22785 1.18619 0.94299 0.90340 0.92524 0.88988 0.90417 0.74535 0.83133 0.85480 0.82043 0.81248 0.81675 0.91940 0.94175 0.92919 0.99763 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 7.95 71.98 0.57 -3.71 16 2 C 0.16 6.19 3.50 44.97 0.16 6.35 16 3 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 4 C -0.12 -3.44 4.84 30.67 0.15 -3.29 16 5 C 0.16 5.38 2.42 45.01 0.11 5.49 16 6 H 0.05 2.09 7.58 -2.38 -0.02 2.07 16 7 N -0.71 -16.98 5.08 -442.41 -2.25 -19.23 16 8 C 0.51 13.34 7.79 87.66 0.68 14.03 16 9 O -0.58 -21.77 15.70 -3.04 -0.05 -21.82 16 10 C -0.10 -1.54 5.60 29.10 0.16 -1.37 16 11 C -0.08 -1.62 4.38 -19.83 -0.09 -1.71 16 12 C -0.12 -2.09 9.66 22.31 0.22 -1.87 16 13 C 0.08 1.39 7.30 22.37 0.16 1.55 16 14 F -0.14 -2.71 17.27 44.97 0.78 -1.93 16 15 C -0.12 -1.90 10.02 22.31 0.22 -1.68 16 16 C -0.13 -2.19 10.02 22.31 0.22 -1.97 16 17 C 0.08 1.76 7.24 22.37 0.16 1.92 16 18 F -0.14 -3.60 16.56 44.97 0.74 -2.85 16 19 C -0.13 -5.25 5.65 30.67 0.17 -5.07 16 20 C 0.18 9.37 5.29 86.36 0.46 9.83 16 21 N -0.60 -29.84 2.99 -675.20 -2.02 -31.86 16 22 C -0.25 -13.20 8.58 84.04 0.72 -12.48 16 23 H 0.08 4.08 6.23 -2.91 -0.02 4.06 16 24 C -0.06 -3.28 4.94 84.86 0.42 -2.86 16 25 N -0.94 -57.40 11.22 21.65 0.24 -57.16 16 26 Si 0.96 45.07 29.58 68.60 2.03 47.10 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 30 H 0.04 1.49 7.62 -2.39 -0.02 1.47 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.06 1.88 7.44 -2.39 -0.02 1.86 16 33 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.42 6.50 8.60 -92.71 -0.80 5.71 16 36 H 0.15 1.16 8.05 -2.39 -0.02 1.14 16 37 H 0.13 1.62 7.79 -2.39 -0.02 1.60 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 3.04 6.12 -2.39 -0.01 3.02 16 44 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -75.43 373.79 4.21 -71.22 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.22 Total: 13.37 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 4.50 Total: 3.15 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -4.02 Total: -108.24 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.52 Total: -4.79 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.43 4.21 -71.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947668200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.665 kcal (2) G-P(sol) polarization free energy of solvation -75.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds