Wall clock time and date at job start Tue Mar 31 2020 21:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58612 * 2 1 4 4 C 1.53197 * 109.58246 * 120.28042 * 2 1 3 5 5 C 1.53043 * 109.33266 * 174.40880 * 4 2 1 6 6 H 1.08999 * 109.46036 * 58.67325 * 5 4 2 7 7 N 1.46497 * 109.45670 * 178.63340 * 5 4 2 8 8 C 1.34783 * 120.00217 * 205.00030 * 7 5 4 9 9 O 1.21277 * 119.99753 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00235 * 179.97438 * 8 7 5 11 11 C 1.50703 * 109.47005 * 180.02562 * 10 8 7 12 12 C 1.38209 * 119.99790 * 264.72488 * 11 10 8 13 13 C 1.38427 * 120.00143 * 179.81693 * 12 11 10 14 14 F 1.35096 * 120.00220 * 180.20817 * 13 12 11 15 15 C 1.38476 * 119.99359 * 0.41328 * 13 12 11 16 16 C 1.38158 * 120.00119 * 359.83567 * 15 13 12 17 17 C 1.38425 * 119.99903 * 84.99741 * 11 10 8 18 18 F 1.35091 * 120.00146 * 359.95789 * 17 11 10 19 19 C 1.53042 * 109.53982 * 298.68181 * 5 4 2 20 20 C 1.53190 * 109.33639 * 61.32171 * 19 5 4 21 21 N 1.46919 * 109.58897 * 239.57019 * 2 1 3 22 22 C 1.36938 * 120.63134 * 6.62948 * 21 2 1 23 23 H 1.08003 * 119.99667 * 330.15464 * 22 21 2 24 24 C 1.38809 * 120.00325 * 150.15524 * 22 21 2 25 25 N 1.31614 * 120.00019 * 344.49423 * 24 22 21 26 26 Si 1.86801 * 119.99981 * 164.48906 * 24 22 21 27 27 H 1.48507 * 109.47078 * 60.00464 * 26 24 22 28 28 H 1.48502 * 109.47284 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47508 * 300.00269 * 26 24 22 30 30 H 1.08997 * 109.47525 * 299.71602 * 1 2 3 31 31 H 1.09001 * 109.46846 * 59.71982 * 1 2 3 32 32 H 1.09001 * 109.47202 * 179.71727 * 1 2 3 33 33 H 1.08993 * 109.49899 * 294.37376 * 4 2 1 34 34 H 1.08997 * 109.49682 * 54.44489 * 4 2 1 35 35 H 0.97007 * 120.00552 * 24.99639 * 7 5 4 36 36 H 1.08995 * 109.47260 * 299.99900 * 10 8 7 37 37 H 1.08998 * 109.46977 * 60.00292 * 10 8 7 38 38 H 1.08005 * 119.99788 * 359.97438 * 12 11 10 39 39 H 1.08000 * 119.99506 * 179.81601 * 15 13 12 40 40 H 1.08004 * 119.99273 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.46956 * 301.36820 * 19 5 4 42 42 H 1.08998 * 109.52451 * 181.30232 * 19 5 4 43 43 H 1.09000 * 109.58456 * 185.59410 * 20 19 5 44 44 H 1.08991 * 109.58885 * 65.16841 * 20 19 5 45 45 H 0.97007 * 120.00275 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5674 -0.8471 1.1717 6 1 4.0065 0.1480 1.0999 7 7 4.0644 -1.5137 2.3778 8 6 5.3286 -1.3003 2.7935 9 8 6.0549 -0.5566 2.1687 10 6 5.8397 -1.9856 4.0345 11 6 7.2706 -1.5806 4.2789 12 6 8.3023 -2.3773 3.8197 13 6 9.6167 -2.0035 4.0408 14 9 10.6252 -2.7801 3.5883 15 6 9.8976 -0.8355 4.7296 16 6 8.8662 -0.0417 5.1931 17 6 7.5515 -0.4135 4.9682 18 9 6.5430 0.3629 5.4211 19 6 3.9569 -1.6657 -0.0613 20 6 3.4651 -0.9486 -1.3224 21 7 2.0226 -0.7010 -1.1935 22 6 1.1538 -1.1154 -2.1675 23 1 0.1397 -1.3821 -1.9087 24 6 1.5765 -1.1928 -3.4874 25 7 2.6873 -0.5925 -3.8590 26 14 0.5688 -2.1489 -4.7363 27 1 -0.7917 -1.5608 -4.8292 28 1 1.2303 -2.0791 -6.0640 29 1 0.4668 -3.5673 -4.3087 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0277 -0.0051 33 1 1.7659 -0.1641 2.1371 34 1 1.6025 -1.7234 1.2939 35 1 3.4836 -2.1088 2.8775 36 1 5.2289 -1.6934 4.8886 37 1 5.7852 -3.0660 3.9015 38 1 8.0831 -3.2904 3.2861 39 1 10.9231 -0.5453 4.9047 40 1 9.0855 0.8691 5.7306 41 1 3.4983 -2.6527 -0.0017 42 1 5.0411 -1.7702 -0.1016 43 1 3.6519 -1.5745 -2.1950 44 1 3.9903 0.0002 -1.4316 45 1 2.9825 -0.6462 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947668201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:47 Heat of formation + Delta-G solvation = -87.459702 kcal Electronic energy + Delta-G solvation = -29210.313896 eV Core-core repulsion = 24863.949968 eV Total energy + Delta-G solvation = -4346.363928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.16948 -49.14927 -40.05844 -38.90067 -37.59030 -34.58906 -33.32307 -32.39965 -31.35113 -30.46002 -29.63262 -27.90663 -26.33321 -24.76536 -23.39396 -22.67833 -21.91549 -20.95392 -20.06250 -19.22515 -17.95379 -17.50930 -17.47311 -17.13379 -16.29569 -15.95665 -15.79372 -15.52418 -15.09266 -15.01205 -14.64809 -14.53398 -13.98961 -13.83836 -13.74890 -13.57515 -13.36914 -13.19361 -12.98493 -12.78404 -12.72267 -12.10528 -12.04276 -11.59824 -11.36508 -11.22058 -11.10478 -10.92802 -10.88100 -10.65639 -10.33155 -10.15196 -10.04823 -9.90666 -9.73471 -9.51219 -9.28362 -8.78068 -8.71552 -8.41839 -6.63122 -5.76655 -3.21141 0.65222 0.72097 2.73441 2.95711 3.37752 3.43491 3.44656 3.45055 3.84814 3.91278 4.14161 4.31353 4.49400 4.62981 4.80350 4.85357 5.00142 5.12716 5.27239 5.37810 5.39636 5.44440 5.58712 5.61553 5.68341 5.75011 5.77570 5.81320 5.99388 6.15482 6.25076 6.31577 6.41613 6.42274 6.47832 6.51365 6.64262 6.78972 6.88943 7.03387 7.09909 7.38093 7.65437 7.70468 7.82746 8.36431 8.47848 9.22946 9.86538 10.44087 11.32052 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002488 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.322360 B =11249.521711 C =12211.440395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.026 0.974 4 C -0.133 4.133 5 C 0.151 3.849 6 H 0.081 0.919 7 N -0.723 5.723 8 C 0.512 3.488 9 O -0.531 6.531 10 C -0.107 4.107 11 C -0.067 4.067 12 C -0.113 4.113 13 C 0.090 3.910 14 F -0.136 7.136 15 C -0.127 4.127 16 C -0.124 4.124 17 C 0.105 3.895 18 F -0.132 7.132 19 C -0.146 4.146 20 C 0.176 3.824 21 N -0.587 5.587 22 C -0.253 4.253 23 H 0.069 0.931 24 C 0.004 3.996 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.339 -3.437 21.213 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.099 0.901 7 N -0.373 5.373 8 C 0.297 3.703 9 O -0.407 6.407 10 C -0.146 4.146 11 C -0.068 4.068 12 C -0.132 4.132 13 C 0.071 3.929 14 F -0.114 7.114 15 C -0.145 4.145 16 C -0.143 4.143 17 C 0.086 3.914 18 F -0.110 7.110 19 C -0.186 4.186 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.195 4.195 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.211 1.211 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.920 -2.868 20.557 23.005 hybrid contribution -0.673 -0.790 -0.506 1.155 sum 9.247 -3.658 20.051 22.381 Atomic orbital electron populations 1.21791 0.95768 1.01410 1.00301 1.20353 0.93070 0.93562 0.86657 0.95605 1.22377 0.93662 1.01620 0.99679 1.21049 0.94256 0.96769 0.83163 0.90117 1.46297 1.12991 1.48860 1.29200 1.20257 0.82298 0.82107 0.85665 1.90748 1.56049 1.37009 1.56926 1.20667 0.92704 1.02807 0.98466 1.19142 0.95327 0.94035 0.98318 1.20875 0.90188 1.01446 1.00665 1.17581 0.84661 0.91211 0.99447 1.91521 1.58952 1.73791 1.87156 1.20971 1.00664 0.93690 0.99208 1.20945 0.90248 1.01193 1.01903 1.17463 0.84959 0.90200 0.98828 1.91511 1.59114 1.73573 1.86808 1.22563 0.99670 0.99557 0.96849 1.20726 0.83280 0.97277 0.93795 1.44151 1.02957 1.64788 1.19154 1.19113 0.95187 1.37847 0.86117 0.91320 1.25114 0.97894 0.99515 0.97009 1.70013 1.24084 1.43670 1.16817 0.86405 0.79616 0.80188 0.80728 1.20902 1.21691 1.21096 0.94320 0.91874 0.92773 0.92699 0.91809 0.77145 0.87371 0.87153 0.83718 0.83741 0.83631 0.92699 0.92953 0.89406 0.96180 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.95 37.16 0.30 -2.17 16 2 C 0.17 3.46 3.50 -67.60 -0.24 3.22 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.19 4.84 -26.61 -0.13 -2.32 16 5 C 0.15 2.59 2.42 -67.89 -0.16 2.42 16 6 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 7 N -0.72 -9.62 5.08 -53.76 -0.27 -9.90 16 8 C 0.51 7.17 7.79 -10.98 -0.09 7.09 16 9 O -0.53 -9.90 15.70 5.56 0.09 -9.82 16 10 C -0.11 -1.01 5.60 -29.03 -0.16 -1.17 16 11 C -0.07 -0.72 4.38 -104.56 -0.46 -1.18 16 12 C -0.11 -1.15 9.66 -39.52 -0.38 -1.53 16 13 C 0.09 0.92 7.30 -39.42 -0.29 0.63 16 14 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 15 C -0.13 -1.09 10.02 -39.52 -0.40 -1.49 16 16 C -0.12 -1.12 10.02 -39.53 -0.40 -1.51 16 17 C 0.11 1.16 7.24 -39.43 -0.29 0.87 16 18 F -0.13 -1.57 16.56 2.25 0.04 -1.54 16 19 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 20 C 0.18 4.24 5.28 -3.71 -0.02 4.22 16 21 N -0.59 -14.31 2.99 -164.78 -0.49 -14.80 16 22 C -0.25 -6.70 8.58 -15.06 -0.13 -6.83 16 23 H 0.07 1.76 6.23 -52.48 -0.33 1.44 16 24 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 25 N -0.90 -26.18 11.23 55.49 0.62 -25.56 16 26 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 32 H 0.05 0.99 7.40 -51.93 -0.38 0.60 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.40 3.93 8.60 -40.82 -0.35 3.58 16 36 H 0.11 0.82 7.79 -51.93 -0.40 0.42 16 37 H 0.11 0.73 8.05 -51.93 -0.42 0.32 16 38 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -32.34 373.83 -8.80 -41.15 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.36 Total: 2.53 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.07 Total: -2.76 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.14 Total: -50.25 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.34 -8.80 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947668201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.312 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds