Wall clock time and date at job start Tue Mar 31 2020 21:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58612 * 2 1 4 4 C 1.53197 * 109.58246 * 120.28042 * 2 1 3 5 5 C 1.53043 * 109.33266 * 174.40880 * 4 2 1 6 6 H 1.08999 * 109.46036 * 58.67325 * 5 4 2 7 7 N 1.46497 * 109.45670 * 178.63340 * 5 4 2 8 8 C 1.34783 * 120.00217 * 205.00030 * 7 5 4 9 9 O 1.21277 * 119.99753 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00235 * 179.97438 * 8 7 5 11 11 C 1.50703 * 109.47005 * 180.02562 * 10 8 7 12 12 C 1.38209 * 119.99790 * 264.72488 * 11 10 8 13 13 C 1.38427 * 120.00143 * 179.81693 * 12 11 10 14 14 F 1.35096 * 120.00220 * 180.20817 * 13 12 11 15 15 C 1.38476 * 119.99359 * 0.41328 * 13 12 11 16 16 C 1.38158 * 120.00119 * 359.83567 * 15 13 12 17 17 C 1.38425 * 119.99903 * 84.99741 * 11 10 8 18 18 F 1.35091 * 120.00146 * 359.95789 * 17 11 10 19 19 C 1.53042 * 109.53982 * 298.68181 * 5 4 2 20 20 C 1.53190 * 109.33639 * 61.32171 * 19 5 4 21 21 N 1.46919 * 109.58897 * 239.57019 * 2 1 3 22 22 C 1.36938 * 120.63134 * 6.62948 * 21 2 1 23 23 H 1.08003 * 119.99667 * 330.15464 * 22 21 2 24 24 C 1.38809 * 120.00325 * 150.15524 * 22 21 2 25 25 N 1.31614 * 120.00019 * 344.49423 * 24 22 21 26 26 Si 1.86801 * 119.99981 * 164.48906 * 24 22 21 27 27 H 1.48507 * 109.47078 * 60.00464 * 26 24 22 28 28 H 1.48502 * 109.47284 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47508 * 300.00269 * 26 24 22 30 30 H 1.08997 * 109.47525 * 299.71602 * 1 2 3 31 31 H 1.09001 * 109.46846 * 59.71982 * 1 2 3 32 32 H 1.09001 * 109.47202 * 179.71727 * 1 2 3 33 33 H 1.08993 * 109.49899 * 294.37376 * 4 2 1 34 34 H 1.08997 * 109.49682 * 54.44489 * 4 2 1 35 35 H 0.97007 * 120.00552 * 24.99639 * 7 5 4 36 36 H 1.08995 * 109.47260 * 299.99900 * 10 8 7 37 37 H 1.08998 * 109.46977 * 60.00292 * 10 8 7 38 38 H 1.08005 * 119.99788 * 359.97438 * 12 11 10 39 39 H 1.08000 * 119.99506 * 179.81601 * 15 13 12 40 40 H 1.08004 * 119.99273 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.46956 * 301.36820 * 19 5 4 42 42 H 1.08998 * 109.52451 * 181.30232 * 19 5 4 43 43 H 1.09000 * 109.58456 * 185.59410 * 20 19 5 44 44 H 1.08991 * 109.58885 * 65.16841 * 20 19 5 45 45 H 0.97007 * 120.00275 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5674 -0.8471 1.1717 6 1 4.0065 0.1480 1.0999 7 7 4.0644 -1.5137 2.3778 8 6 5.3286 -1.3003 2.7935 9 8 6.0549 -0.5566 2.1687 10 6 5.8397 -1.9856 4.0345 11 6 7.2706 -1.5806 4.2789 12 6 8.3023 -2.3773 3.8197 13 6 9.6167 -2.0035 4.0408 14 9 10.6252 -2.7801 3.5883 15 6 9.8976 -0.8355 4.7296 16 6 8.8662 -0.0417 5.1931 17 6 7.5515 -0.4135 4.9682 18 9 6.5430 0.3629 5.4211 19 6 3.9569 -1.6657 -0.0613 20 6 3.4651 -0.9486 -1.3224 21 7 2.0226 -0.7010 -1.1935 22 6 1.1538 -1.1154 -2.1675 23 1 0.1397 -1.3821 -1.9087 24 6 1.5765 -1.1928 -3.4874 25 7 2.6873 -0.5925 -3.8590 26 14 0.5688 -2.1489 -4.7363 27 1 -0.7917 -1.5608 -4.8292 28 1 1.2303 -2.0791 -6.0640 29 1 0.4668 -3.5673 -4.3087 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0277 -0.0051 33 1 1.7659 -0.1641 2.1371 34 1 1.6025 -1.7234 1.2939 35 1 3.4836 -2.1088 2.8775 36 1 5.2289 -1.6934 4.8886 37 1 5.7852 -3.0660 3.9015 38 1 8.0831 -3.2904 3.2861 39 1 10.9231 -0.5453 4.9047 40 1 9.0855 0.8691 5.7306 41 1 3.4983 -2.6527 -0.0017 42 1 5.0411 -1.7702 -0.1016 43 1 3.6519 -1.5745 -2.1950 44 1 3.9903 0.0002 -1.4316 45 1 2.9825 -0.6462 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947668201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:46 Heat of formation + Delta-G solvation = -106.801238 kcal Electronic energy + Delta-G solvation = -29211.152608 eV Core-core repulsion = 24863.949968 eV Total energy + Delta-G solvation = -4347.202639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.98133 -49.95607 -41.16773 -39.87401 -39.05223 -36.08830 -34.29234 -34.05444 -32.91673 -31.44025 -31.07985 -28.89374 -27.84123 -26.59035 -24.22743 -23.87115 -23.30280 -22.28155 -21.39248 -20.83037 -18.75460 -18.46035 -18.28048 -18.22948 -17.95170 -17.22606 -16.83253 -16.69590 -16.35364 -16.12885 -15.75557 -15.52775 -15.40011 -15.32589 -15.01978 -14.73678 -14.61267 -14.49424 -14.26878 -14.01668 -13.69956 -13.32963 -12.95780 -12.88626 -12.85373 -12.72124 -12.64918 -12.60651 -12.35517 -12.11142 -12.05231 -11.84823 -11.71851 -11.49762 -11.33260 -10.90174 -10.54178 -10.14187 -9.98817 -9.55757 -8.64070 -7.83579 -5.30713 -0.10727 0.00293 1.47840 1.50067 1.56463 1.65842 2.08555 2.47463 2.53089 3.10629 3.18067 3.32724 3.41348 3.59192 3.62116 3.84200 3.95761 4.01329 4.07105 4.11549 4.27780 4.35714 4.40260 4.47684 4.61867 4.69971 4.74521 4.76505 4.85602 4.92471 4.96144 4.98096 5.00876 5.08044 5.09707 5.11883 5.17124 5.39210 5.48995 5.55397 5.58966 5.70935 5.73108 5.75883 6.43388 6.62216 7.17303 7.32079 7.89126 8.42501 9.23758 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002488 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.322360 B =11249.521711 C =12211.440395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.007 0.993 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.050 0.950 7 N -0.709 5.709 8 C 0.508 3.492 9 O -0.583 6.583 10 C -0.096 4.096 11 C -0.082 4.082 12 C -0.121 4.121 13 C 0.074 3.926 14 F -0.142 7.142 15 C -0.122 4.122 16 C -0.124 4.124 17 C 0.084 3.916 18 F -0.141 7.141 19 C -0.129 4.129 20 C 0.184 3.816 21 N -0.602 5.602 22 C -0.250 4.250 23 H 0.081 0.919 24 C -0.057 4.057 25 N -0.942 5.942 26 Si 0.965 3.035 27 H -0.273 1.273 28 H -0.301 1.301 29 H -0.276 1.276 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.417 0.583 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.053 0.947 44 H -0.017 1.017 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.226 -4.774 24.059 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.025 0.975 4 C -0.156 4.156 5 C 0.057 3.943 6 H 0.068 0.932 7 N -0.360 5.360 8 C 0.296 3.704 9 O -0.463 6.463 10 C -0.135 4.135 11 C -0.083 4.083 12 C -0.139 4.139 13 C 0.055 3.945 14 F -0.121 7.121 15 C -0.140 4.140 16 C -0.143 4.143 17 C 0.064 3.936 18 F -0.119 7.119 19 C -0.169 4.169 20 C 0.057 3.943 21 N -0.326 5.326 22 C -0.380 4.380 23 H 0.098 0.902 24 C -0.252 4.252 25 N -0.588 5.588 26 Si 0.793 3.207 27 H -0.199 1.199 28 H -0.227 1.227 29 H -0.202 1.202 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.255 0.745 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.174 0.826 39 H 0.188 0.812 40 H 0.186 0.814 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.001 0.999 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.762 -4.236 23.472 25.410 hybrid contribution -0.272 -0.294 -1.345 1.404 sum 8.491 -4.530 22.127 24.129 Atomic orbital electron populations 1.21708 0.93825 1.01774 1.01074 1.20646 0.94763 0.92760 0.86647 0.97512 1.22171 0.92444 1.02349 0.98665 1.20612 0.94949 0.95042 0.83683 0.93152 1.45989 1.13395 1.48779 1.27866 1.21075 0.81686 0.81233 0.86412 1.90736 1.57359 1.39345 1.58842 1.20705 0.92084 1.04228 0.96515 1.19324 0.96107 0.94234 0.98642 1.21075 0.90241 1.01992 1.00617 1.17842 0.84690 0.91857 1.00104 1.91503 1.59170 1.74053 1.87339 1.21275 1.01930 0.92814 0.97993 1.21248 0.89564 1.01912 1.01539 1.17806 0.85555 0.90566 0.99643 1.91482 1.59574 1.73851 1.87018 1.22287 0.98913 0.99658 0.96038 1.20425 0.83724 0.95275 0.94878 1.44414 1.02571 1.65491 1.20158 1.19520 0.95722 1.36262 0.86529 0.90180 1.25904 0.99159 1.01012 0.99083 1.70201 1.26169 1.45874 1.16587 0.85379 0.78306 0.79126 0.77878 1.19907 1.22743 1.20214 0.90431 0.94316 0.92445 0.89288 0.90300 0.74536 0.84922 0.83718 0.82558 0.81219 0.81359 0.91739 0.93835 0.92858 0.99850 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.95 71.98 0.57 -3.75 16 2 C 0.16 6.26 3.50 44.98 0.16 6.42 16 3 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 4 C -0.12 -3.51 4.84 30.67 0.15 -3.36 16 5 C 0.16 5.39 2.42 45.02 0.11 5.50 16 6 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 7 N -0.71 -17.04 5.08 -442.40 -2.25 -19.28 16 8 C 0.51 13.38 7.79 87.66 0.68 14.06 16 9 O -0.58 -21.79 15.70 -3.02 -0.05 -21.84 16 10 C -0.10 -1.55 5.60 29.10 0.16 -1.38 16 11 C -0.08 -1.62 4.38 -19.83 -0.09 -1.71 16 12 C -0.12 -2.30 9.66 22.31 0.22 -2.08 16 13 C 0.07 1.43 7.30 22.37 0.16 1.59 16 14 F -0.14 -2.93 17.27 44.97 0.78 -2.15 16 15 C -0.12 -1.90 10.02 22.31 0.22 -1.68 16 16 C -0.12 -2.04 10.02 22.31 0.22 -1.81 16 17 C 0.08 1.74 7.24 22.37 0.16 1.90 16 18 F -0.14 -3.18 16.56 44.97 0.74 -2.44 16 19 C -0.13 -5.11 5.65 30.67 0.17 -4.93 16 20 C 0.18 9.29 5.28 86.36 0.46 9.75 16 21 N -0.60 -29.79 2.99 -675.26 -2.02 -31.81 16 22 C -0.25 -13.33 8.58 84.03 0.72 -12.61 16 23 H 0.08 4.03 6.23 -2.91 -0.02 4.01 16 24 C -0.06 -3.19 4.94 84.86 0.42 -2.77 16 25 N -0.94 -57.19 11.23 21.65 0.24 -56.94 16 26 Si 0.96 44.85 29.58 68.60 2.03 46.87 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 29 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.49 7.67 -2.39 -0.02 1.47 16 32 H 0.06 1.92 7.40 -2.39 -0.02 1.90 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.42 6.54 8.60 -92.70 -0.80 5.74 16 36 H 0.13 1.52 7.79 -2.39 -0.02 1.50 16 37 H 0.14 1.33 8.05 -2.39 -0.02 1.31 16 38 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 41 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 3.04 6.15 -2.39 -0.01 3.02 16 44 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 45 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -74.82 373.83 4.21 -70.61 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.22 Total: 13.85 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 4.50 Total: 3.13 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.02 Total: -108.04 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.05 Total: -21.84 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.52 Total: -4.59 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -74.82 4.21 -70.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947668201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.188 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds