Wall clock time and date at job start Tue Mar 31 2020 21:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.58889 * 2 1 4 4 C 1.53188 * 109.70472 * 239.64109 * 2 1 3 5 5 C 1.53043 * 109.31467 * 294.77984 * 4 2 1 6 6 H 1.08998 * 109.45899 * 58.64237 * 5 4 2 7 7 N 1.46504 * 109.45992 * 178.61356 * 5 4 2 8 8 C 1.34780 * 119.99658 * 205.00128 * 7 5 4 9 9 O 1.21280 * 120.00427 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99770 * 179.97438 * 8 7 5 11 11 C 1.50697 * 109.47087 * 179.97438 * 10 8 7 12 12 C 1.38209 * 119.99798 * 100.00352 * 11 10 8 13 13 C 1.38432 * 120.00008 * 179.97438 * 12 11 10 14 14 F 1.35096 * 119.99745 * 179.97438 * 13 12 11 15 15 C 1.38474 * 119.99994 * 359.97438 * 13 12 11 16 16 C 1.38161 * 119.99872 * 359.97438 * 15 13 12 17 17 C 1.38426 * 120.00466 * 279.72352 * 11 10 8 18 18 F 1.35108 * 119.99673 * 0.02562 * 17 11 10 19 19 C 1.53033 * 109.53857 * 298.63644 * 5 4 2 20 20 C 1.52760 * 109.38562 * 61.23545 * 19 5 4 21 21 N 1.46915 * 109.00966 * 305.59342 * 20 19 5 22 22 C 1.36945 * 120.63065 * 233.58343 * 21 20 19 23 23 H 1.07996 * 120.00223 * 151.62647 * 22 21 20 24 24 C 1.38812 * 119.99791 * 331.62845 * 22 21 20 25 25 N 1.31621 * 119.99722 * 343.22075 * 24 22 21 26 26 Si 1.86797 * 120.00136 * 163.22109 * 24 22 21 27 27 H 1.48497 * 109.47343 * 89.99726 * 26 24 22 28 28 H 1.48499 * 109.47138 * 210.00291 * 26 24 22 29 29 H 1.48506 * 109.47011 * 329.99973 * 26 24 22 30 30 H 1.08991 * 109.47412 * 299.72237 * 1 2 3 31 31 H 1.09004 * 109.47115 * 59.72047 * 1 2 3 32 32 H 1.09001 * 109.47524 * 179.71216 * 1 2 3 33 33 H 1.09006 * 109.50014 * 54.73231 * 4 2 1 34 34 H 1.09001 * 109.50186 * 174.79676 * 4 2 1 35 35 H 0.96997 * 119.99883 * 24.99878 * 7 5 4 36 36 H 1.08999 * 109.47095 * 300.00141 * 10 8 7 37 37 H 1.09008 * 109.46947 * 60.00126 * 10 8 7 38 38 H 1.08001 * 119.99861 * 359.97438 * 12 11 10 39 39 H 1.07997 * 119.99973 * 180.02562 * 15 13 12 40 40 H 1.08000 * 120.00206 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.50193 * 181.31451 * 19 5 4 42 42 H 1.09006 * 109.49898 * 301.41116 * 19 5 4 43 43 H 1.09001 * 109.50960 * 185.70236 * 20 19 5 44 44 H 1.09001 * 109.42767 * 65.42922 * 20 19 5 45 45 H 0.97006 * 119.99968 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6473 -2.2044 -1.1690 6 1 0.5625 -2.2840 -1.0992 7 7 2.1111 -2.8977 -2.3734 8 6 1.4864 -4.0174 -2.7891 9 8 0.5402 -4.4507 -2.1663 10 6 1.9631 -4.7302 -4.0283 11 6 1.1027 -5.9430 -4.2724 12 6 0.0882 -5.8932 -5.2098 13 6 -0.7019 -7.0075 -5.4345 14 9 -1.6938 -6.9586 -6.3503 15 6 -0.4755 -8.1722 -4.7205 16 6 0.5393 -8.2223 -3.7842 17 6 1.3320 -7.1088 -3.5621 18 9 2.3270 -7.1591 -2.6495 19 6 2.2856 -2.8449 0.0656 20 6 1.7767 -2.1410 1.3223 21 7 2.0224 -0.6981 1.1954 22 6 2.7026 -0.0178 2.1700 23 1 3.2720 0.8640 1.9159 24 6 2.6603 -0.4616 3.4845 25 7 1.7299 -1.3126 3.8621 26 14 3.9237 0.1488 4.7176 27 1 3.4171 1.3786 5.3779 28 1 4.1632 -0.9000 5.7413 29 1 5.1955 0.4529 4.0138 30 1 -0.3634 0.5095 0.8924 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0276 -0.0052 33 1 1.6107 -0.2792 -2.1366 34 1 3.1325 -0.6473 -1.2894 35 1 2.8676 -2.5509 -2.8717 36 1 1.8947 -4.0576 -4.8833 37 1 2.9990 -5.0414 -3.8927 38 1 -0.0881 -4.9850 -5.7669 39 1 -1.0916 -9.0416 -4.8961 40 1 0.7162 -9.1308 -3.2276 41 1 2.0199 -3.9012 0.1060 42 1 3.3695 -2.7438 0.0087 43 1 2.3049 -2.5264 2.1945 44 1 0.7073 -2.3214 1.4310 45 1 1.7000 -1.6225 4.7809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947668206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:50 Heat of formation + Delta-G solvation = -87.316454 kcal Electronic energy + Delta-G solvation = -29400.140355 eV Core-core repulsion = 25053.782639 eV Total energy + Delta-G solvation = -4346.357716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.18792 -49.08865 -40.06903 -38.93225 -37.67064 -34.48739 -33.31977 -32.49495 -30.89463 -30.44026 -29.65470 -27.95494 -26.78819 -24.32810 -23.37725 -22.71833 -21.91765 -21.50849 -20.25878 -18.47242 -17.90368 -17.50204 -17.48561 -17.17348 -16.60810 -15.98310 -15.85216 -15.48912 -15.02563 -14.74662 -14.63717 -14.51914 -13.98585 -13.79368 -13.72331 -13.66056 -13.32111 -13.03086 -12.96722 -12.68776 -12.48704 -12.25137 -12.09601 -11.98513 -11.40774 -11.35536 -11.06457 -10.93007 -10.78351 -10.59813 -10.34867 -10.19882 -10.06113 -9.82097 -9.71310 -9.47646 -9.27667 -8.76905 -8.71802 -8.40332 -6.67374 -5.77788 -3.20749 0.65957 0.72199 2.73848 2.96439 3.37263 3.43861 3.44974 3.46669 3.84367 3.94047 4.14403 4.32146 4.49080 4.62315 4.80524 4.86045 4.99180 5.13836 5.29101 5.38892 5.39141 5.43635 5.60631 5.62256 5.67816 5.75522 5.79236 5.81943 6.02445 6.07129 6.26073 6.31774 6.43634 6.46333 6.49030 6.58665 6.66586 6.80973 6.88931 6.96098 7.16425 7.40050 7.66314 7.72043 7.80529 8.37035 8.46585 9.22122 9.85600 10.42402 11.30534 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.002487 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.661854 B =11256.367533 C =11824.123943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.065 0.935 4 C -0.132 4.132 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.724 5.724 8 C 0.512 3.488 9 O -0.531 6.531 10 C -0.106 4.106 11 C -0.068 4.068 12 C -0.115 4.115 13 C 0.088 3.912 14 F -0.137 7.137 15 C -0.126 4.126 16 C -0.124 4.124 17 C 0.110 3.890 18 F -0.129 7.129 19 C -0.147 4.147 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.254 4.254 23 H 0.065 0.935 24 C 0.004 3.996 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 -10.468 -21.059 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.083 0.917 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.374 5.374 8 C 0.297 3.703 9 O -0.407 6.407 10 C -0.146 4.146 11 C -0.070 4.070 12 C -0.134 4.134 13 C 0.069 3.931 14 F -0.115 7.115 15 C -0.145 4.145 16 C -0.143 4.143 17 C 0.090 3.910 18 F -0.108 7.108 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.083 0.917 24 C -0.195 4.195 25 N -0.543 5.543 26 Si 0.731 3.269 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.909 -10.837 -20.398 23.116 hybrid contribution 0.930 0.392 0.504 1.128 sum 0.021 -10.445 -19.894 22.470 Atomic orbital electron populations 1.22301 0.98709 1.01093 1.00061 1.20433 0.91776 0.95098 0.86511 0.91682 1.22297 1.01151 0.94156 0.99580 1.21111 0.99783 0.91280 0.83163 0.89697 1.46303 1.34729 1.26984 1.29363 1.20250 0.83357 0.81069 0.85659 1.90746 1.27825 1.65233 1.56941 1.20666 1.00503 0.94929 0.98511 1.19151 0.97539 0.93773 0.96525 1.20849 0.94827 0.98383 0.99327 1.17570 0.88893 0.95275 0.91410 1.91514 1.58948 1.96984 1.64073 1.20969 0.99080 0.97759 0.96669 1.20970 0.95429 0.98518 0.99380 1.17485 0.88784 0.94606 0.90129 1.91537 1.58275 1.96876 1.64075 1.22492 1.00150 0.99198 0.96852 1.20637 0.97762 0.82893 0.93904 1.44141 1.64017 1.03306 1.19174 1.19138 1.22080 1.10456 0.86653 0.91732 1.25060 0.97695 0.99920 0.96838 1.70037 1.31905 1.35537 1.16865 0.86330 0.81539 0.77921 0.81149 1.21428 1.21604 1.20532 0.92593 0.94536 0.93236 0.92631 0.91880 0.77180 0.87256 0.87296 0.83786 0.83758 0.83583 0.92915 0.92722 0.89384 0.96152 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.04 37.16 0.34 -2.77 16 2 C 0.17 3.40 3.28 -67.60 -0.22 3.18 16 3 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 4 C -0.13 -2.14 5.03 -26.61 -0.13 -2.27 16 5 C 0.15 2.55 2.21 -67.89 -0.15 2.40 16 6 H 0.09 1.65 5.94 -51.93 -0.31 1.34 16 7 N -0.72 -9.61 5.08 -53.77 -0.27 -9.88 16 8 C 0.51 7.16 7.78 -10.98 -0.09 7.07 16 9 O -0.53 -9.88 15.62 5.56 0.09 -9.79 16 10 C -0.11 -1.00 5.56 -29.04 -0.16 -1.16 16 11 C -0.07 -0.73 4.42 -104.56 -0.46 -1.20 16 12 C -0.12 -1.12 9.65 -39.52 -0.38 -1.50 16 13 C 0.09 0.86 7.30 -39.42 -0.29 0.58 16 14 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 15 C -0.13 -1.09 10.02 -39.52 -0.40 -1.49 16 16 C -0.12 -1.16 10.02 -39.52 -0.40 -1.56 16 17 C 0.11 1.26 7.14 -39.43 -0.28 0.98 16 18 F -0.13 -1.68 16.65 2.25 0.04 -1.65 16 19 C -0.15 -2.92 5.63 -26.84 -0.15 -3.07 16 20 C 0.17 4.20 4.86 -3.94 -0.02 4.19 16 21 N -0.58 -14.22 2.70 -165.04 -0.45 -14.66 16 22 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 23 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 24 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 25 N -0.90 -26.09 11.20 55.49 0.62 -25.47 16 26 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.99 5.76 -51.93 -0.30 0.69 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.39 3.92 8.60 -40.82 -0.35 3.57 16 36 H 0.11 0.68 8.00 -51.93 -0.42 0.26 16 37 H 0.11 0.86 7.94 -51.92 -0.41 0.45 16 38 H 0.14 1.11 8.04 -52.49 -0.42 0.68 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 44 H 0.02 0.53 7.52 -51.93 -0.39 0.14 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -32.45 372.84 -8.62 -41.08 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.26 Total: 3.17 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -3.02 Total: -3.58 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.10 Total: -50.01 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.45 -8.62 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947668206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.241 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds