Wall clock time and date at job start Tue Mar 31 2020 21:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.58889 * 2 1 4 4 C 1.53188 * 109.70472 * 239.64109 * 2 1 3 5 5 C 1.53043 * 109.31467 * 294.77984 * 4 2 1 6 6 H 1.08998 * 109.45899 * 58.64237 * 5 4 2 7 7 N 1.46504 * 109.45992 * 178.61356 * 5 4 2 8 8 C 1.34780 * 119.99658 * 205.00128 * 7 5 4 9 9 O 1.21280 * 120.00427 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99770 * 179.97438 * 8 7 5 11 11 C 1.50697 * 109.47087 * 179.97438 * 10 8 7 12 12 C 1.38209 * 119.99798 * 100.00352 * 11 10 8 13 13 C 1.38432 * 120.00008 * 179.97438 * 12 11 10 14 14 F 1.35096 * 119.99745 * 179.97438 * 13 12 11 15 15 C 1.38474 * 119.99994 * 359.97438 * 13 12 11 16 16 C 1.38161 * 119.99872 * 359.97438 * 15 13 12 17 17 C 1.38426 * 120.00466 * 279.72352 * 11 10 8 18 18 F 1.35108 * 119.99673 * 0.02562 * 17 11 10 19 19 C 1.53033 * 109.53857 * 298.63644 * 5 4 2 20 20 C 1.52760 * 109.38562 * 61.23545 * 19 5 4 21 21 N 1.46915 * 109.00966 * 305.59342 * 20 19 5 22 22 C 1.36945 * 120.63065 * 233.58343 * 21 20 19 23 23 H 1.07996 * 120.00223 * 151.62647 * 22 21 20 24 24 C 1.38812 * 119.99791 * 331.62845 * 22 21 20 25 25 N 1.31621 * 119.99722 * 343.22075 * 24 22 21 26 26 Si 1.86797 * 120.00136 * 163.22109 * 24 22 21 27 27 H 1.48497 * 109.47343 * 89.99726 * 26 24 22 28 28 H 1.48499 * 109.47138 * 210.00291 * 26 24 22 29 29 H 1.48506 * 109.47011 * 329.99973 * 26 24 22 30 30 H 1.08991 * 109.47412 * 299.72237 * 1 2 3 31 31 H 1.09004 * 109.47115 * 59.72047 * 1 2 3 32 32 H 1.09001 * 109.47524 * 179.71216 * 1 2 3 33 33 H 1.09006 * 109.50014 * 54.73231 * 4 2 1 34 34 H 1.09001 * 109.50186 * 174.79676 * 4 2 1 35 35 H 0.96997 * 119.99883 * 24.99878 * 7 5 4 36 36 H 1.08999 * 109.47095 * 300.00141 * 10 8 7 37 37 H 1.09008 * 109.46947 * 60.00126 * 10 8 7 38 38 H 1.08001 * 119.99861 * 359.97438 * 12 11 10 39 39 H 1.07997 * 119.99973 * 180.02562 * 15 13 12 40 40 H 1.08000 * 120.00206 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.50193 * 181.31451 * 19 5 4 42 42 H 1.09006 * 109.49898 * 301.41116 * 19 5 4 43 43 H 1.09001 * 109.50960 * 185.70236 * 20 19 5 44 44 H 1.09001 * 109.42767 * 65.42922 * 20 19 5 45 45 H 0.97006 * 119.99968 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6473 -2.2044 -1.1690 6 1 0.5625 -2.2840 -1.0992 7 7 2.1111 -2.8977 -2.3734 8 6 1.4864 -4.0174 -2.7891 9 8 0.5402 -4.4507 -2.1663 10 6 1.9631 -4.7302 -4.0283 11 6 1.1027 -5.9430 -4.2724 12 6 0.0882 -5.8932 -5.2098 13 6 -0.7019 -7.0075 -5.4345 14 9 -1.6938 -6.9586 -6.3503 15 6 -0.4755 -8.1722 -4.7205 16 6 0.5393 -8.2223 -3.7842 17 6 1.3320 -7.1088 -3.5621 18 9 2.3270 -7.1591 -2.6495 19 6 2.2856 -2.8449 0.0656 20 6 1.7767 -2.1410 1.3223 21 7 2.0224 -0.6981 1.1954 22 6 2.7026 -0.0178 2.1700 23 1 3.2720 0.8640 1.9159 24 6 2.6603 -0.4616 3.4845 25 7 1.7299 -1.3126 3.8621 26 14 3.9237 0.1488 4.7176 27 1 3.4171 1.3786 5.3779 28 1 4.1632 -0.9000 5.7413 29 1 5.1955 0.4529 4.0138 30 1 -0.3634 0.5095 0.8924 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3634 -1.0276 -0.0052 33 1 1.6107 -0.2792 -2.1366 34 1 3.1325 -0.6473 -1.2894 35 1 2.8676 -2.5509 -2.8717 36 1 1.8947 -4.0576 -4.8833 37 1 2.9990 -5.0414 -3.8927 38 1 -0.0881 -4.9850 -5.7669 39 1 -1.0916 -9.0416 -4.8961 40 1 0.7162 -9.1308 -3.2276 41 1 2.0199 -3.9012 0.1060 42 1 3.3695 -2.7438 0.0087 43 1 2.3049 -2.5264 2.1945 44 1 0.7073 -2.3214 1.4310 45 1 1.7000 -1.6225 4.7809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947668206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:49 Heat of formation + Delta-G solvation = -106.653130 kcal Electronic energy + Delta-G solvation = -29400.978856 eV Core-core repulsion = 25053.782639 eV Total energy + Delta-G solvation = -4347.196217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.97576 -49.94199 -41.18356 -39.92018 -39.08073 -35.99870 -34.36680 -34.02318 -32.50553 -31.46973 -31.08368 -29.07659 -28.17897 -26.15825 -24.22728 -23.85011 -23.55848 -22.74987 -21.40815 -20.06978 -18.94279 -18.61589 -18.27380 -18.21142 -17.94064 -17.30515 -16.80729 -16.53812 -16.33983 -16.11247 -15.61844 -15.52176 -15.41397 -15.34212 -15.00436 -14.59351 -14.52135 -14.33684 -14.16958 -13.95208 -13.90687 -13.68418 -13.14959 -12.94881 -12.90637 -12.78016 -12.62406 -12.57631 -12.27548 -12.05705 -12.04230 -12.01437 -11.76605 -11.48164 -11.15803 -10.88129 -10.55213 -10.13097 -9.96373 -9.54962 -8.67635 -7.85573 -5.30979 -0.09995 0.01017 1.46744 1.48538 1.57806 1.67407 2.10651 2.48807 2.52000 3.11182 3.20196 3.30485 3.42214 3.61409 3.63076 3.82004 3.96778 4.03507 4.09450 4.12623 4.30960 4.36768 4.45553 4.48607 4.52465 4.71057 4.72983 4.78204 4.84881 4.92293 4.94150 4.98331 5.01674 5.09380 5.10782 5.15624 5.16964 5.34298 5.44575 5.51242 5.61615 5.68578 5.75744 5.76645 6.41283 6.64015 7.16054 7.33845 7.88261 8.40539 9.21142 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.002487 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.661854 B =11256.367533 C =11824.123943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.070 0.930 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.061 0.939 7 N -0.710 5.710 8 C 0.508 3.492 9 O -0.583 6.583 10 C -0.096 4.096 11 C -0.082 4.082 12 C -0.116 4.116 13 C 0.076 3.924 14 F -0.140 7.140 15 C -0.122 4.122 16 C -0.128 4.128 17 C 0.081 3.919 18 F -0.145 7.145 19 C -0.132 4.132 20 C 0.186 3.814 21 N -0.599 5.599 22 C -0.257 4.257 23 H 0.073 0.927 24 C -0.054 4.054 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.285 1.285 28 H -0.298 1.298 29 H -0.267 1.267 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.417 0.583 36 H 0.151 0.849 37 H 0.127 0.873 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.039 0.961 42 H 0.060 0.940 43 H 0.050 0.950 44 H -0.013 1.013 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 -9.739 -24.140 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.089 0.911 4 C -0.156 4.156 5 C 0.057 3.943 6 H 0.079 0.921 7 N -0.361 5.361 8 C 0.296 3.704 9 O -0.462 6.462 10 C -0.135 4.135 11 C -0.083 4.083 12 C -0.135 4.135 13 C 0.057 3.943 14 F -0.119 7.119 15 C -0.140 4.140 16 C -0.146 4.146 17 C 0.062 3.938 18 F -0.123 7.123 19 C -0.172 4.172 20 C 0.060 3.940 21 N -0.322 5.322 22 C -0.388 4.388 23 H 0.090 0.910 24 C -0.249 4.249 25 N -0.583 5.583 26 Si 0.794 3.206 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.192 1.192 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.182 0.818 39 H 0.187 0.813 40 H 0.182 0.818 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.005 0.995 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.271 -10.079 -23.549 25.617 hybrid contribution 0.494 0.142 1.416 1.506 sum 0.765 -9.937 -22.133 24.274 Atomic orbital electron populations 1.22184 0.98309 1.00169 1.00542 1.20726 0.92117 0.95573 0.86348 0.91140 1.22121 1.01932 0.92738 0.98808 1.20675 0.98119 0.92135 0.83361 0.92095 1.46009 1.35319 1.26756 1.28056 1.21065 0.82360 0.80588 0.86419 1.90735 1.30240 1.66459 1.58804 1.20713 1.00847 0.94705 0.97282 1.19343 0.98214 0.93985 0.96803 1.21092 0.94171 0.99144 0.99102 1.17797 0.88999 0.95921 0.91620 1.91507 1.59107 1.97036 1.64225 1.21260 0.98735 0.98332 0.95703 1.21232 0.95098 0.98756 0.99523 1.17910 0.89311 0.95988 0.90626 1.91492 1.59020 1.97029 1.64805 1.22242 1.00324 0.98062 0.96575 1.20288 0.95295 0.83798 0.94669 1.44353 1.64371 1.03373 1.20083 1.19533 1.21706 1.10254 0.87268 0.90970 1.25835 0.99532 1.00718 0.98799 1.70214 1.33904 1.37451 1.16741 0.85306 0.79661 0.76950 0.78703 1.21218 1.22433 1.19163 0.95416 0.90585 0.94894 0.88793 0.90706 0.74616 0.83134 0.85471 0.81756 0.81294 0.81836 0.94237 0.92162 0.93134 0.99469 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 9.04 71.98 0.65 -5.12 16 2 C 0.16 6.15 3.28 44.97 0.15 6.30 16 3 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 4 C -0.12 -3.42 5.03 30.67 0.15 -3.26 16 5 C 0.16 5.29 2.21 45.02 0.10 5.39 16 6 H 0.06 2.35 5.94 -2.39 -0.01 2.33 16 7 N -0.71 -16.91 5.08 -442.40 -2.25 -19.16 16 8 C 0.51 13.26 7.78 87.66 0.68 13.95 16 9 O -0.58 -21.60 15.62 -3.03 -0.05 -21.65 16 10 C -0.10 -1.53 5.56 29.10 0.16 -1.37 16 11 C -0.08 -1.61 4.42 -19.83 -0.09 -1.70 16 12 C -0.12 -2.01 9.65 22.31 0.22 -1.80 16 13 C 0.08 1.36 7.30 22.37 0.16 1.53 16 14 F -0.14 -2.63 17.27 44.97 0.78 -1.86 16 15 C -0.12 -1.91 10.02 22.31 0.22 -1.68 16 16 C -0.13 -2.25 10.02 22.31 0.22 -2.03 16 17 C 0.08 1.80 7.14 22.37 0.16 1.96 16 18 F -0.14 -3.76 16.65 44.97 0.75 -3.01 16 19 C -0.13 -5.32 5.63 30.53 0.17 -5.15 16 20 C 0.19 9.39 4.86 86.22 0.42 9.81 16 21 N -0.60 -29.50 2.70 -676.08 -1.83 -31.33 16 22 C -0.26 -13.93 9.58 84.03 0.81 -13.13 16 23 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 24 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 25 N -0.94 -56.79 11.20 21.65 0.24 -56.55 16 26 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.03 1.33 5.76 -2.39 -0.01 1.32 16 33 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.42 6.48 8.60 -92.71 -0.80 5.68 16 36 H 0.15 1.13 8.00 -2.39 -0.02 1.11 16 37 H 0.13 1.60 7.94 -2.38 -0.02 1.58 16 38 H 0.16 2.03 8.04 -2.91 -0.02 2.00 16 39 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 43 H 0.05 2.90 6.07 -2.39 -0.01 2.89 16 44 H -0.01 -0.71 7.52 -2.39 -0.02 -0.73 16 45 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -75.10 372.84 4.51 -70.59 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.23 Total: 14.75 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 4.61 Total: 1.10 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.83 Total: -107.04 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 1.53 Total: -4.86 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -75.10 4.51 -70.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947668206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.063 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds