Wall clock time and date at job start Tue Mar 31 2020 21:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.08999 * 109.46845 * 301.22059 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21276 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99555 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47129 * 180.02562 * 10 8 7 12 12 C 1.38204 * 119.99963 * 99.99887 * 11 10 8 13 13 C 1.38428 * 120.00265 * 179.97438 * 12 11 10 14 14 F 1.35102 * 120.00121 * 179.97438 * 13 12 11 15 15 C 1.38476 * 120.00022 * 0.02562 * 13 12 11 16 16 C 1.38166 * 119.99456 * 359.95192 * 15 13 12 17 17 C 1.38423 * 120.00177 * 279.72814 * 11 10 8 18 18 F 1.35104 * 119.99922 * 0.02562 * 17 11 10 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07995 * 120.00274 * 209.19622 * 22 21 20 24 24 C 1.38814 * 119.99924 * 29.19414 * 22 21 20 25 25 N 1.31623 * 119.99750 * 24.22945 * 24 22 21 26 26 Si 1.86799 * 120.00119 * 204.23697 * 24 22 21 27 27 H 1.48497 * 109.46863 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47014 * 299.99863 * 26 24 22 29 29 H 1.48505 * 109.47110 * 59.99717 * 26 24 22 30 30 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 31 31 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 33 33 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 34 34 H 1.09000 * 109.38856 * 185.34959 * 4 2 1 35 35 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 36 36 H 1.09002 * 109.47608 * 300.00323 * 10 8 7 37 37 H 1.09000 * 109.47224 * 60.00576 * 10 8 7 38 38 H 1.08002 * 120.00007 * 359.96197 * 12 11 10 39 39 H 1.07992 * 120.00171 * 179.97438 * 15 13 12 40 40 H 1.08002 * 119.99751 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 42 42 H 1.08998 * 109.52068 * 58.60136 * 19 5 4 43 43 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 44 44 H 1.09001 * 109.58413 * 174.42141 * 20 19 5 45 45 H 0.96998 * 120.00078 * 5.78560 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2811 1.0996 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5320 -4.4440 2.1730 10 6 1.9498 -4.7178 4.0397 11 6 1.0887 -5.9299 4.2853 12 6 1.5381 -7.1833 3.9149 13 6 0.7474 -8.2968 4.1409 14 9 1.1865 -9.5220 3.7783 15 6 -0.4941 -8.1549 4.7377 16 6 -0.9431 -6.9019 5.1084 17 6 -0.1499 -5.7886 4.8869 18 9 -0.5871 -4.5640 5.2535 19 6 2.2843 -2.8431 -0.0582 20 6 1.7740 -2.1421 -1.3211 21 7 2.0226 -0.6996 -1.1945 22 6 2.7052 -0.0210 -2.1685 23 1 3.2868 0.8520 -1.9119 24 6 2.6496 -0.4553 -3.4858 25 7 1.6267 -1.1728 -3.8995 26 14 4.0267 -0.0216 -4.6712 27 1 3.7312 -0.6007 -6.0063 28 1 4.1354 1.4550 -4.7846 29 1 5.3083 -0.5749 -4.1647 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5084 -0.8931 33 1 1.5987 -0.2724 2.1349 34 1 3.1240 -0.6413 1.2942 35 1 2.8564 -2.5412 2.8798 36 1 2.9859 -5.0294 3.9072 37 1 1.8796 -4.0430 4.8929 38 1 2.5061 -7.2939 3.4489 39 1 -1.1111 -9.0235 4.9136 40 1 -1.9112 -6.7912 5.5742 41 1 2.0200 -3.8999 -0.0966 42 1 3.3678 -2.7410 0.0020 43 1 0.7043 -2.3203 -1.4310 44 1 2.3024 -2.5288 -2.1925 45 1 0.8724 -1.3274 -3.3095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947668208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:52 Heat of formation + Delta-G solvation = -110.282374 kcal Electronic energy + Delta-G solvation = -29429.053784 eV Core-core repulsion = 25081.700191 eV Total energy + Delta-G solvation = -4347.353593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.98886 -49.96557 -41.26194 -40.01596 -39.20628 -36.20265 -34.50858 -34.07581 -32.60775 -31.37888 -31.04567 -29.09333 -28.26799 -26.08082 -24.25786 -23.85550 -23.62878 -22.83631 -21.46549 -20.26146 -19.36591 -18.70774 -18.29990 -18.26778 -18.03383 -17.33779 -16.82013 -16.38204 -16.26404 -16.07579 -15.85217 -15.45869 -15.41455 -15.39385 -15.14491 -15.01649 -14.57105 -14.42879 -14.32948 -13.97153 -13.84183 -13.72250 -13.46359 -12.94768 -12.84098 -12.80687 -12.63350 -12.48935 -12.34170 -12.07233 -11.98044 -11.93090 -11.77024 -11.49266 -11.20164 -10.94266 -10.46410 -10.16468 -10.05129 -9.57074 -8.92747 -8.22850 -5.39716 -0.12130 -0.01344 1.58717 1.62167 1.66346 1.84700 2.05394 2.44401 2.66540 3.09205 3.17127 3.23696 3.39419 3.47536 3.59838 3.71675 3.91095 3.96318 4.00672 4.09667 4.19807 4.29127 4.33288 4.38589 4.45591 4.55426 4.60861 4.69457 4.72591 4.80154 4.91080 4.96525 4.97913 4.99099 5.01140 5.04171 5.07677 5.16125 5.21139 5.25812 5.50112 5.54604 5.74302 5.88503 6.40132 6.57738 7.07960 7.27513 7.79272 8.25416 9.02295 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.002546 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.992983 B =10996.272517 C =11795.290249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.117 4.117 5 C 0.163 3.837 6 H 0.061 0.939 7 N -0.710 5.710 8 C 0.509 3.491 9 O -0.582 6.582 10 C -0.096 4.096 11 C -0.082 4.082 12 C -0.120 4.120 13 C 0.075 3.925 14 F -0.142 7.142 15 C -0.121 4.121 16 C -0.125 4.125 17 C 0.085 3.915 18 F -0.142 7.142 19 C -0.127 4.127 20 C 0.165 3.835 21 N -0.606 5.606 22 C -0.351 4.351 23 H 0.056 0.944 24 C -0.078 4.078 25 N -0.946 5.946 26 Si 1.114 2.886 27 H -0.297 1.297 28 H -0.274 1.274 29 H -0.278 1.278 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.026 0.974 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.417 0.583 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.047 0.953 42 H 0.064 0.936 43 H -0.005 1.005 44 H 0.041 0.959 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 -10.133 24.479 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.084 0.916 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.079 0.921 7 N -0.361 5.361 8 C 0.297 3.703 9 O -0.461 6.461 10 C -0.135 4.135 11 C -0.084 4.084 12 C -0.139 4.139 13 C 0.055 3.945 14 F -0.120 7.120 15 C -0.140 4.140 16 C -0.144 4.144 17 C 0.066 3.934 18 F -0.120 7.120 19 C -0.167 4.167 20 C 0.038 3.962 21 N -0.330 5.330 22 C -0.480 4.480 23 H 0.074 0.926 24 C -0.274 4.274 25 N -0.588 5.588 26 Si 0.939 3.061 27 H -0.223 1.223 28 H -0.200 1.200 29 H -0.204 1.204 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.177 0.823 39 H 0.188 0.812 40 H 0.185 0.815 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.013 0.987 44 H 0.060 0.940 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.158 -10.625 22.502 24.912 hybrid contribution -0.743 0.336 1.035 1.317 sum 0.415 -10.290 23.537 25.691 Atomic orbital electron populations 1.22218 0.98214 1.00331 1.00692 1.20613 0.92096 0.95434 0.86375 0.91610 1.22038 1.01981 0.93000 0.98644 1.20640 0.98130 0.91994 0.83462 0.92092 1.45987 1.35563 1.26861 1.27738 1.21069 0.82261 0.80539 0.86460 1.90733 1.30126 1.66406 1.58862 1.20709 1.01760 0.94616 0.96466 1.19323 0.94403 0.95305 0.99362 1.21088 1.01972 0.90130 1.00724 1.17832 0.95025 0.80177 1.01446 1.91508 1.89678 1.41001 1.89832 1.21275 0.94761 0.99170 0.98786 1.21247 1.01295 0.90321 1.01520 1.17822 0.94163 0.80667 1.00792 1.91485 1.89539 1.41552 1.89437 1.22221 1.00519 0.98244 0.95723 1.20610 0.95359 0.84474 0.95722 1.44394 1.64974 1.02828 1.20802 1.20226 1.24798 1.13809 0.89198 0.92628 1.27216 1.02692 0.99686 0.97843 1.70897 1.06253 1.43662 1.37978 0.82864 0.73151 0.76379 0.73691 1.22303 1.19992 1.20437 0.94561 0.90462 0.95472 0.88914 0.90746 0.74567 0.83742 0.84851 0.82306 0.81247 0.81492 0.93448 0.91769 0.98712 0.94017 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.87 9.02 71.98 0.65 -5.22 16 2 C 0.16 6.33 3.27 44.83 0.15 6.48 16 3 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 4 C -0.12 -3.49 4.99 30.53 0.15 -3.34 16 5 C 0.16 5.23 2.21 45.02 0.10 5.33 16 6 H 0.06 2.32 5.93 -2.39 -0.01 2.31 16 7 N -0.71 -16.61 5.08 -442.39 -2.25 -18.86 16 8 C 0.51 13.02 7.78 87.66 0.68 13.70 16 9 O -0.58 -21.13 15.62 -3.02 -0.05 -21.17 16 10 C -0.10 -1.50 5.56 29.10 0.16 -1.33 16 11 C -0.08 -1.60 4.42 -19.83 -0.09 -1.69 16 12 C -0.12 -2.19 9.65 22.31 0.22 -1.98 16 13 C 0.07 1.38 7.30 22.37 0.16 1.55 16 14 F -0.14 -2.82 17.27 44.97 0.78 -2.04 16 15 C -0.12 -1.86 10.02 22.31 0.22 -1.64 16 16 C -0.13 -2.05 10.02 22.31 0.22 -1.83 16 17 C 0.08 1.76 7.14 22.37 0.16 1.92 16 18 F -0.14 -3.25 16.66 44.97 0.75 -2.50 16 19 C -0.13 -4.93 5.65 30.67 0.17 -4.75 16 20 C 0.16 8.09 4.29 86.36 0.37 8.46 16 21 N -0.61 -29.84 2.55 -676.05 -1.72 -31.56 16 22 C -0.35 -19.33 9.48 84.03 0.80 -18.53 16 23 H 0.06 3.02 7.94 -2.91 -0.02 2.99 16 24 C -0.08 -4.47 4.69 84.86 0.40 -4.07 16 25 N -0.95 -58.92 12.45 21.65 0.27 -58.65 16 26 Si 1.11 51.02 29.98 68.60 2.06 53.08 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 30 H 0.04 1.44 5.74 -2.39 -0.01 1.43 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.42 6.39 8.60 -92.71 -0.80 5.60 16 36 H 0.14 1.26 8.00 -2.39 -0.02 1.24 16 37 H 0.13 1.45 7.94 -2.39 -0.02 1.43 16 38 H 0.16 2.28 8.04 -2.91 -0.02 2.26 16 39 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 41 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 43 H -0.01 -0.27 7.23 -2.39 -0.02 -0.29 16 44 H 0.04 2.33 6.39 -2.39 -0.02 2.31 16 45 H 0.25 16.18 6.71 -92.71 -0.62 15.55 16 Total: -1.00 -76.02 371.83 4.74 -71.28 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.37 Total: 17.37 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 4.53 Total: -6.94 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -3.70 Total: -109.07 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 1.53 Total: -4.55 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.06 Total: 53.08 kcal Total: -76.02 4.74 -71.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947668208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.999 kcal (2) G-P(sol) polarization free energy of solvation -76.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds