Wall clock time and date at job start Tue Mar 31 2020 21:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.58588 * 2 1 4 4 C 1.53186 * 109.58608 * 120.27973 * 2 1 3 5 5 C 1.53042 * 109.33895 * 174.40528 * 4 2 1 6 6 H 1.09000 * 109.45855 * 58.67784 * 5 4 2 7 7 N 1.46506 * 109.45892 * 178.63395 * 5 4 2 8 8 C 1.34782 * 119.99668 * 204.99976 * 7 5 4 9 9 O 1.21274 * 120.00096 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99781 * 179.97438 * 8 7 5 11 11 C 1.50697 * 109.46896 * 180.02562 * 10 8 7 12 12 C 1.38258 * 119.99967 * 264.72672 * 11 10 8 13 13 C 1.38216 * 120.07217 * 179.72366 * 12 11 10 14 14 C 1.38257 * 120.06724 * 0.55114 * 13 12 11 15 15 C 1.38369 * 120.00017 * 359.72356 * 14 13 12 16 16 F 1.35101 * 120.03323 * 180.02562 * 15 14 13 17 17 C 1.38362 * 120.00300 * 85.00287 * 11 10 8 18 18 F 1.35104 * 120.03758 * 0.02562 * 17 11 10 19 19 C 1.53034 * 109.53918 * 298.68777 * 5 4 2 20 20 C 1.53184 * 109.34170 * 61.31568 * 19 5 4 21 21 N 1.46921 * 109.58617 * 239.57459 * 2 1 3 22 22 C 1.36931 * 120.63304 * 6.62427 * 21 2 1 23 23 H 1.08001 * 119.99745 * 330.84768 * 22 21 2 24 24 C 1.38813 * 120.00238 * 150.84874 * 22 21 2 25 25 N 1.31617 * 120.00179 * 343.81948 * 24 22 21 26 26 Si 1.86801 * 120.00044 * 163.81009 * 24 22 21 27 27 H 1.48506 * 109.46732 * 94.31496 * 26 24 22 28 28 H 1.48495 * 109.47420 * 214.30915 * 26 24 22 29 29 H 1.48493 * 109.47169 * 334.31653 * 26 24 22 30 30 H 1.08999 * 109.46775 * 299.72051 * 1 2 3 31 31 H 1.08997 * 109.46957 * 59.71650 * 1 2 3 32 32 H 1.08996 * 109.46827 * 179.71961 * 1 2 3 33 33 H 1.08994 * 109.50299 * 294.37731 * 4 2 1 34 34 H 1.09004 * 109.49676 * 54.43883 * 4 2 1 35 35 H 0.96997 * 119.99960 * 25.00363 * 7 5 4 36 36 H 1.09001 * 109.46963 * 300.00539 * 10 8 7 37 37 H 1.09000 * 109.46639 * 60.00394 * 10 8 7 38 38 H 1.08003 * 119.96037 * 359.97438 * 12 11 10 39 39 H 1.07993 * 119.96603 * 180.29903 * 13 12 11 40 40 H 1.07997 * 119.99944 * 179.69944 * 14 13 12 41 41 H 1.09003 * 109.47335 * 301.36030 * 19 5 4 42 42 H 1.09008 * 109.52462 * 181.30169 * 19 5 4 43 43 H 1.09000 * 109.59111 * 185.59028 * 20 19 5 44 44 H 1.09005 * 109.58779 * 65.16687 * 20 19 5 45 45 H 0.96995 * 120.00803 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0436 -0.7277 1.2463 5 6 3.5675 -0.8471 1.1716 6 1 4.0066 0.1479 1.0999 7 7 4.0645 -1.5138 2.3778 8 6 5.3288 -1.3003 2.7933 9 8 6.0548 -0.5560 2.1690 10 6 5.8399 -1.9856 4.0344 11 6 7.2707 -1.5807 4.2787 12 6 8.3028 -2.3777 3.8193 13 6 9.6157 -2.0049 4.0375 14 6 9.8997 -0.8398 4.7256 15 6 8.8690 -0.0428 5.1916 16 9 9.1458 1.0961 5.8636 17 6 7.5517 -0.4142 4.9677 18 9 6.5437 0.3622 5.4223 19 6 3.9569 -1.6657 -0.0613 20 6 3.4651 -0.9486 -1.3225 21 7 2.0226 -0.7010 -1.1936 22 6 1.1538 -1.1154 -2.1675 23 1 0.1366 -1.3714 -1.9104 24 6 1.5806 -1.2064 -3.4853 25 7 2.6909 -0.6074 -3.8604 26 14 0.5791 -2.1793 -4.7263 27 1 -0.3431 -1.2636 -5.4449 28 1 1.4929 -2.8268 -5.7013 29 1 -0.2088 -3.2206 -4.0192 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0050 33 1 1.7661 -0.1641 2.1370 34 1 1.6025 -1.7234 1.2938 35 1 3.4838 -2.1088 2.8773 36 1 5.2290 -1.6934 4.8885 37 1 5.7853 -3.0661 3.9013 38 1 8.0828 -3.2907 3.2858 39 1 10.4205 -2.6263 3.6737 40 1 10.9259 -0.5520 4.8997 41 1 3.4984 -2.6528 -0.0019 42 1 5.0413 -1.7702 -0.1017 43 1 3.6519 -1.5744 -2.1951 44 1 3.9904 0.0003 -1.4316 45 1 2.9893 -0.6712 -4.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947754915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:56 Heat of formation + Delta-G solvation = -85.957413 kcal Electronic energy + Delta-G solvation = -29294.912111 eV Core-core repulsion = 24948.613328 eV Total energy + Delta-G solvation = -4346.298783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.63844 -48.71918 -40.08355 -38.95355 -37.59544 -34.58952 -33.20210 -32.39711 -31.31964 -30.56462 -29.66276 -27.92490 -26.33589 -24.76877 -23.10080 -22.89650 -21.94477 -20.97051 -20.06396 -19.22572 -18.12007 -17.54812 -17.21815 -17.11904 -16.40675 -16.19642 -15.78523 -15.16483 -15.10364 -15.04016 -14.98833 -14.55199 -13.99002 -13.87782 -13.75525 -13.59247 -13.30567 -13.20597 -12.85792 -12.76500 -12.40781 -12.27053 -11.96650 -11.60284 -11.53093 -11.22283 -11.11304 -10.93387 -10.88872 -10.64932 -10.32516 -10.14998 -10.05131 -9.88702 -9.73493 -9.42879 -9.11899 -8.97002 -8.71949 -8.42263 -6.64252 -5.77098 -3.20491 0.67374 0.69472 2.73559 2.97779 3.36603 3.44036 3.44620 3.46106 3.54533 4.06833 4.17677 4.39095 4.49161 4.62579 4.77407 4.85307 5.00468 5.11071 5.27242 5.38022 5.41568 5.46985 5.53419 5.58816 5.67068 5.77537 5.80085 5.95012 5.99284 6.15367 6.24942 6.31410 6.41482 6.42116 6.47245 6.51281 6.64077 6.78331 6.88759 7.03014 7.09726 7.37737 7.65382 7.70268 7.82767 8.36568 8.46965 9.22476 9.86405 10.43619 11.31680 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021466 B = 0.002414 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.076593 B =11594.285951 C =12179.480976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.026 0.974 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.081 0.919 7 N -0.723 5.723 8 C 0.512 3.488 9 O -0.531 6.531 10 C -0.106 4.106 11 C -0.069 4.069 12 C -0.088 4.088 13 C -0.099 4.099 14 C -0.128 4.128 15 C 0.066 3.934 16 F -0.130 7.130 17 C 0.082 3.918 18 F -0.126 7.126 19 C -0.145 4.145 20 C 0.175 3.825 21 N -0.587 5.587 22 C -0.251 4.251 23 H 0.070 0.930 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.899 3.101 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.020 0.980 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.187 -5.685 19.939 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.099 0.901 7 N -0.373 5.373 8 C 0.297 3.703 9 O -0.407 6.407 10 C -0.146 4.146 11 C -0.070 4.070 12 C -0.107 4.107 13 C -0.117 4.117 14 C -0.147 4.147 15 C 0.046 3.954 16 F -0.109 7.109 17 C 0.062 3.938 18 F -0.104 7.104 19 C -0.186 4.186 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.729 3.271 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.038 0.962 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.734 -5.044 19.340 22.687 hybrid contribution -0.818 -0.367 -0.273 0.937 sum 9.916 -5.411 19.068 22.163 Atomic orbital electron populations 1.21793 0.95766 1.01418 1.00312 1.20354 0.93077 0.93571 0.86659 0.95602 1.22373 0.93668 1.01623 0.99675 1.21051 0.94260 0.96781 0.83173 0.90134 1.46294 1.12981 1.48865 1.29207 1.20262 0.82309 0.82110 0.85662 1.90748 1.56095 1.36931 1.56953 1.20666 0.92746 1.02798 0.98416 1.19261 0.96102 0.93537 0.98100 1.21016 0.91592 0.99908 0.98149 1.21042 0.96993 0.95962 0.97710 1.21084 0.98778 0.95159 0.99694 1.17640 0.92222 0.85859 0.99663 1.91527 1.94236 1.47374 1.77740 1.17466 0.83450 0.91691 1.01192 1.91522 1.58565 1.73554 1.86798 1.22556 0.99655 0.99544 0.96820 1.20735 0.83256 0.97305 0.93838 1.44168 1.02983 1.64806 1.19121 1.19159 0.94895 1.37798 0.86246 0.91245 1.25093 0.97910 0.99681 0.96950 1.70028 1.24099 1.43719 1.16737 0.86334 0.79368 0.80019 0.81357 1.21501 1.21637 1.20485 0.94307 0.91880 0.92751 0.92703 0.91795 0.77147 0.87534 0.86991 0.84216 0.84108 0.83763 0.92692 0.92947 0.89330 0.96202 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.95 37.16 0.30 -2.18 16 2 C 0.17 3.47 3.50 -67.60 -0.24 3.23 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.20 4.84 -26.61 -0.13 -2.33 16 5 C 0.15 2.59 2.42 -67.89 -0.16 2.42 16 6 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 7 N -0.72 -9.64 5.08 -53.76 -0.27 -9.91 16 8 C 0.51 7.19 7.79 -10.98 -0.09 7.10 16 9 O -0.53 -9.95 15.70 5.56 0.09 -9.86 16 10 C -0.11 -1.01 5.61 -29.03 -0.16 -1.17 16 11 C -0.07 -0.74 4.38 -104.57 -0.46 -1.20 16 12 C -0.09 -0.77 9.68 -39.58 -0.38 -1.15 16 13 C -0.10 -0.75 10.04 -39.58 -0.40 -1.15 16 14 C -0.13 -1.11 10.02 -39.53 -0.40 -1.51 16 15 C 0.07 0.77 7.31 -39.37 -0.29 0.48 16 16 F -0.13 -1.63 17.18 2.25 0.04 -1.59 16 17 C 0.08 1.03 7.25 -39.37 -0.29 0.74 16 18 F -0.13 -1.75 16.48 2.25 0.04 -1.71 16 19 C -0.15 -2.84 5.65 -26.62 -0.15 -2.99 16 20 C 0.17 4.21 5.29 -3.71 -0.02 4.19 16 21 N -0.59 -14.30 2.99 -164.78 -0.49 -14.79 16 22 C -0.25 -6.65 8.60 -15.06 -0.13 -6.78 16 23 H 0.07 1.78 6.21 -52.49 -0.33 1.46 16 24 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 25 N -0.90 -26.10 11.22 55.49 0.62 -25.48 16 26 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16 32 H 0.05 0.99 7.40 -51.93 -0.38 0.61 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.40 3.94 8.60 -40.82 -0.35 3.58 16 36 H 0.11 0.85 7.79 -51.93 -0.40 0.44 16 37 H 0.11 0.70 8.05 -51.93 -0.42 0.28 16 38 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 43 H 0.09 2.38 6.11 -51.93 -0.32 2.06 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -32.93 373.67 -8.81 -41.74 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.36 Total: 1.89 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -3.08 Total: -2.31 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.14 Total: -50.18 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.08 Total: -3.30 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.93 -8.81 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947754915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.215 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds