Wall clock time and date at job start Tue Mar 31 2020 21:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.70295 * 2 1 4 4 C 1.53196 * 109.58919 * 120.35456 * 2 1 3 5 5 C 1.53042 * 109.30908 * 65.15604 * 4 2 1 6 6 H 1.09001 * 109.44910 * 301.35017 * 5 4 2 7 7 N 1.46500 * 109.45803 * 181.38806 * 5 4 2 8 8 C 1.34775 * 120.00052 * 154.93136 * 7 5 4 9 9 O 1.21279 * 119.99923 * 359.97438 * 8 7 5 10 10 C 1.50707 * 119.99796 * 179.97438 * 8 7 5 11 11 C 1.50698 * 109.47013 * 179.97438 * 10 8 7 12 12 C 1.38246 * 120.00448 * 265.25351 * 11 10 8 13 13 C 1.38215 * 120.07275 * 180.25150 * 12 11 10 14 14 C 1.38254 * 120.06904 * 359.49995 * 13 12 11 15 15 C 1.38370 * 119.99936 * 0.24318 * 14 13 12 16 16 F 1.35103 * 120.03068 * 180.02562 * 15 14 13 17 17 C 1.38378 * 119.99657 * 85.00088 * 11 10 8 18 18 F 1.35098 * 120.03376 * 359.97438 * 17 11 10 19 19 C 1.53037 * 109.54009 * 61.36465 * 5 4 2 20 20 C 1.53195 * 109.31381 * 298.63069 * 19 5 4 21 21 N 1.46923 * 109.58746 * 239.64853 * 2 1 3 22 22 C 1.36931 * 120.63541 * 113.83836 * 21 2 1 23 23 H 1.08003 * 119.99752 * 27.89833 * 22 21 2 24 24 C 1.38812 * 120.00204 * 207.89554 * 22 21 2 25 25 N 1.31612 * 120.00322 * 17.08224 * 24 22 21 26 26 Si 1.86807 * 119.99936 * 197.08263 * 24 22 21 27 27 H 1.48498 * 109.47008 * 94.75395 * 26 24 22 28 28 H 1.48497 * 109.47247 * 214.75316 * 26 24 22 29 29 H 1.48499 * 109.47047 * 334.75446 * 26 24 22 30 30 H 1.09004 * 109.46998 * 180.35662 * 1 2 3 31 31 H 1.09003 * 109.47185 * 300.35337 * 1 2 3 32 32 H 1.08994 * 109.47626 * 60.35259 * 1 2 3 33 33 H 1.08998 * 109.49381 * 305.20395 * 4 2 1 34 34 H 1.08996 * 109.49394 * 185.10156 * 4 2 1 35 35 H 0.97008 * 119.99877 * 334.92257 * 7 5 4 36 36 H 1.08994 * 109.47029 * 59.99873 * 10 8 7 37 37 H 1.08997 * 109.46719 * 299.99975 * 10 8 7 38 38 H 1.08005 * 119.96306 * 0.02562 * 12 11 10 39 39 H 1.08005 * 119.96300 * 179.76561 * 13 12 11 40 40 H 1.08002 * 119.99678 * 180.23108 * 14 13 12 41 41 H 1.08998 * 109.49766 * 58.58357 * 19 5 4 42 42 H 1.09004 * 109.49868 * 178.68422 * 19 5 4 43 43 H 1.08999 * 109.58455 * 174.41827 * 20 19 5 44 44 H 1.08997 * 109.58774 * 294.85173 * 20 19 5 45 45 H 0.96998 * 120.00622 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 1.6415 -2.2041 1.1701 6 1 0.5566 -2.2813 1.0991 7 7 2.1024 -2.8978 2.3753 8 6 1.4743 -4.0153 2.7914 9 8 0.5273 -4.4463 2.1684 10 6 1.9488 -4.7292 4.0310 11 6 1.0838 -5.9385 4.2764 12 6 0.0025 -5.8526 5.1335 13 6 -0.7887 -6.9622 5.3636 14 6 -0.5067 -8.1577 4.7291 15 6 0.5716 -8.2456 3.8665 16 9 0.8475 -9.4134 3.2458 17 6 1.3687 -7.1336 3.6397 18 9 2.4218 -7.2168 2.7976 19 6 2.2801 -2.8463 -0.0636 20 6 1.7691 -2.1410 -1.3238 21 7 2.0225 -0.6994 -1.1945 22 6 2.7051 -0.0210 -2.1686 23 1 3.2733 0.8617 -1.9147 24 6 2.6667 -0.4677 -3.4823 25 7 1.7342 -1.3152 -3.8623 26 14 3.9386 0.1342 -4.7110 27 1 5.0585 -0.8384 -4.7807 28 1 3.3107 0.2629 -6.0505 29 1 4.4576 1.4566 -4.2785 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3634 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 1.6075 -0.2784 2.1368 34 1 3.1297 -0.6503 1.2912 35 1 2.8598 -2.5529 2.8738 36 1 1.8827 -4.0560 4.8857 37 1 2.9836 -5.0436 3.8954 38 1 -0.2220 -4.9183 5.6267 39 1 -1.6308 -6.8941 6.0365 40 1 -1.1280 -9.0231 4.9069 41 1 3.3640 -2.7473 -0.0054 42 1 2.0124 -3.9022 -0.1038 43 1 2.2945 -2.5274 -2.1972 44 1 0.6987 -2.3156 -1.4317 45 1 1.7072 -1.6271 -4.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947754923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:02 Heat of formation + Delta-G solvation = -86.017719 kcal Electronic energy + Delta-G solvation = -29503.466646 eV Core-core repulsion = 25157.165247 eV Total energy + Delta-G solvation = -4346.301398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.61119 -48.69112 -40.09613 -38.98300 -37.66952 -34.48795 -33.19715 -32.48538 -30.81916 -30.56142 -29.68729 -27.97210 -26.78629 -24.32638 -23.09310 -22.91980 -21.92971 -21.54203 -20.26118 -18.47476 -18.07470 -17.53329 -17.29317 -17.10239 -16.63283 -16.25454 -15.86268 -15.12942 -15.06939 -15.02117 -14.71156 -14.51593 -14.02270 -13.84396 -13.71991 -13.61452 -13.28119 -13.03980 -12.76381 -12.54233 -12.38104 -12.26418 -12.21662 -11.93247 -11.51420 -11.40853 -11.05984 -10.92253 -10.79282 -10.61872 -10.34431 -10.16688 -10.05149 -9.79740 -9.71355 -9.39984 -9.11724 -8.95939 -8.71951 -8.40237 -6.68390 -5.77424 -3.20466 0.67518 0.70066 2.73690 2.98106 3.38084 3.45042 3.45454 3.46846 3.56197 4.08302 4.18423 4.38472 4.49272 4.62871 4.76691 4.85630 5.00963 5.10887 5.29507 5.38918 5.40541 5.47361 5.53725 5.61065 5.67303 5.79090 5.79850 5.94172 6.02223 6.07373 6.25598 6.31603 6.43024 6.46203 6.48564 6.58413 6.66403 6.80845 6.88676 6.95895 7.16047 7.40301 7.66470 7.72354 7.80958 8.37025 8.46521 9.22137 9.85622 10.42277 11.30707 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.002588 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.249702 B =10815.601142 C =11574.799223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.065 0.935 4 C -0.132 4.132 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.724 5.724 8 C 0.512 3.488 9 O -0.531 6.531 10 C -0.106 4.106 11 C -0.069 4.069 12 C -0.089 4.089 13 C -0.100 4.100 14 C -0.128 4.128 15 C 0.067 3.933 16 F -0.130 7.130 17 C 0.084 3.916 18 F -0.124 7.124 19 C -0.147 4.147 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.254 4.254 23 H 0.066 0.934 24 C 0.004 3.996 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.021 0.979 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.865 -8.942 22.826 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.083 0.917 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.374 5.374 8 C 0.296 3.704 9 O -0.408 6.408 10 C -0.146 4.146 11 C -0.071 4.071 12 C -0.107 4.107 13 C -0.119 4.119 14 C -0.147 4.147 15 C 0.047 3.953 16 F -0.108 7.108 17 C 0.064 3.936 18 F -0.103 7.103 19 C -0.188 4.188 20 C 0.048 3.952 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.084 0.916 24 C -0.195 4.195 25 N -0.543 5.543 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.039 0.961 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.522 -9.349 22.102 24.130 hybrid contribution 1.235 0.094 -0.818 1.484 sum -1.287 -9.256 21.284 23.245 Atomic orbital electron populations 1.22304 0.98719 1.01091 1.00066 1.20436 0.91771 0.95084 0.86536 0.91656 1.22300 1.01148 0.94151 0.99580 1.21114 0.99803 0.91277 0.83143 0.89683 1.46310 1.34610 1.27164 1.29300 1.20261 0.83373 0.81024 0.85699 1.90747 1.27866 1.65211 1.56936 1.20666 1.00526 0.94946 0.98493 1.19266 0.97770 0.92488 0.97554 1.20982 0.93102 0.99345 0.97289 1.21026 0.99721 0.91619 0.99485 1.21082 0.96389 1.00233 0.97000 1.17651 0.97807 0.81530 0.98358 1.91532 1.93332 1.44997 1.80951 1.17490 0.88017 0.94006 0.94135 1.91537 1.53645 1.96718 1.68364 1.22570 1.00141 0.99179 0.96874 1.20742 0.97712 0.82870 0.93896 1.44171 1.63760 1.03461 1.19267 1.19177 1.21967 1.10449 0.86724 0.91634 1.25055 0.97675 0.99985 0.96820 1.70032 1.31701 1.35706 1.16908 0.86288 0.81298 0.78420 0.80835 1.21527 1.21817 1.20417 0.93221 0.94526 0.92602 0.92622 0.91889 0.77177 0.87073 0.87469 0.84307 0.84162 0.83772 0.92700 0.92969 0.89313 0.96093 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.03 37.16 0.34 -2.76 16 2 C 0.17 3.39 3.29 -67.60 -0.22 3.17 16 3 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 4 C -0.13 -2.13 5.02 -26.61 -0.13 -2.27 16 5 C 0.15 2.55 2.21 -67.89 -0.15 2.40 16 6 H 0.09 1.64 5.92 -51.93 -0.31 1.34 16 7 N -0.72 -9.62 5.08 -53.76 -0.27 -9.89 16 8 C 0.51 7.17 7.79 -10.98 -0.09 7.09 16 9 O -0.53 -9.92 15.70 5.56 0.09 -9.83 16 10 C -0.11 -1.01 5.60 -29.03 -0.16 -1.17 16 11 C -0.07 -0.75 4.38 -104.57 -0.46 -1.20 16 12 C -0.09 -0.75 9.68 -39.59 -0.38 -1.13 16 13 C -0.10 -0.74 10.04 -39.58 -0.40 -1.14 16 14 C -0.13 -1.11 10.02 -39.53 -0.40 -1.51 16 15 C 0.07 0.79 7.31 -39.37 -0.29 0.50 16 16 F -0.13 -1.67 17.18 2.25 0.04 -1.63 16 17 C 0.08 1.07 7.25 -39.36 -0.29 0.79 16 18 F -0.12 -1.82 16.48 2.25 0.04 -1.78 16 19 C -0.15 -2.97 5.65 -26.61 -0.15 -3.12 16 20 C 0.17 4.22 4.89 -3.70 -0.02 4.21 16 21 N -0.59 -14.25 2.70 -164.77 -0.45 -14.69 16 22 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 23 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 24 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 25 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 26 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 30 H 0.05 0.99 5.72 -51.93 -0.30 0.69 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.39 3.92 8.60 -40.82 -0.35 3.57 16 36 H 0.11 0.65 8.05 -51.93 -0.42 0.23 16 37 H 0.11 0.90 7.79 -51.93 -0.40 0.49 16 38 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 39 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 44 H 0.02 0.55 7.50 -51.93 -0.39 0.16 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -33.19 372.68 -8.62 -41.81 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.25 Total: 2.44 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.03 Total: -3.10 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.10 Total: -50.15 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.19 -8.62 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947754923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.211 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds