Wall clock time and date at job start Tue Mar 31 2020 21:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.70295 * 2 1 4 4 C 1.53196 * 109.58919 * 120.35456 * 2 1 3 5 5 C 1.53042 * 109.30908 * 65.15604 * 4 2 1 6 6 H 1.09001 * 109.44910 * 301.35017 * 5 4 2 7 7 N 1.46500 * 109.45803 * 181.38806 * 5 4 2 8 8 C 1.34775 * 120.00052 * 154.93136 * 7 5 4 9 9 O 1.21279 * 119.99923 * 359.97438 * 8 7 5 10 10 C 1.50707 * 119.99796 * 179.97438 * 8 7 5 11 11 C 1.50698 * 109.47013 * 179.97438 * 10 8 7 12 12 C 1.38246 * 120.00448 * 265.25351 * 11 10 8 13 13 C 1.38215 * 120.07275 * 180.25150 * 12 11 10 14 14 C 1.38254 * 120.06904 * 359.49995 * 13 12 11 15 15 C 1.38370 * 119.99936 * 0.24318 * 14 13 12 16 16 F 1.35103 * 120.03068 * 180.02562 * 15 14 13 17 17 C 1.38378 * 119.99657 * 85.00088 * 11 10 8 18 18 F 1.35098 * 120.03376 * 359.97438 * 17 11 10 19 19 C 1.53037 * 109.54009 * 61.36465 * 5 4 2 20 20 C 1.53195 * 109.31381 * 298.63069 * 19 5 4 21 21 N 1.46923 * 109.58746 * 239.64853 * 2 1 3 22 22 C 1.36931 * 120.63541 * 113.83836 * 21 2 1 23 23 H 1.08003 * 119.99752 * 27.89833 * 22 21 2 24 24 C 1.38812 * 120.00204 * 207.89554 * 22 21 2 25 25 N 1.31612 * 120.00322 * 17.08224 * 24 22 21 26 26 Si 1.86807 * 119.99936 * 197.08263 * 24 22 21 27 27 H 1.48498 * 109.47008 * 94.75395 * 26 24 22 28 28 H 1.48497 * 109.47247 * 214.75316 * 26 24 22 29 29 H 1.48499 * 109.47047 * 334.75446 * 26 24 22 30 30 H 1.09004 * 109.46998 * 180.35662 * 1 2 3 31 31 H 1.09003 * 109.47185 * 300.35337 * 1 2 3 32 32 H 1.08994 * 109.47626 * 60.35259 * 1 2 3 33 33 H 1.08998 * 109.49381 * 305.20395 * 4 2 1 34 34 H 1.08996 * 109.49394 * 185.10156 * 4 2 1 35 35 H 0.97008 * 119.99877 * 334.92257 * 7 5 4 36 36 H 1.08994 * 109.47029 * 59.99873 * 10 8 7 37 37 H 1.08997 * 109.46719 * 299.99975 * 10 8 7 38 38 H 1.08005 * 119.96306 * 0.02562 * 12 11 10 39 39 H 1.08005 * 119.96300 * 179.76561 * 13 12 11 40 40 H 1.08002 * 119.99678 * 180.23108 * 14 13 12 41 41 H 1.08998 * 109.49766 * 58.58357 * 19 5 4 42 42 H 1.09004 * 109.49868 * 178.68422 * 19 5 4 43 43 H 1.08999 * 109.58455 * 174.41827 * 20 19 5 44 44 H 1.08997 * 109.58774 * 294.85173 * 20 19 5 45 45 H 0.96998 * 120.00622 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 1.6415 -2.2041 1.1701 6 1 0.5566 -2.2813 1.0991 7 7 2.1024 -2.8978 2.3753 8 6 1.4743 -4.0153 2.7914 9 8 0.5273 -4.4463 2.1684 10 6 1.9488 -4.7292 4.0310 11 6 1.0838 -5.9385 4.2764 12 6 0.0025 -5.8526 5.1335 13 6 -0.7887 -6.9622 5.3636 14 6 -0.5067 -8.1577 4.7291 15 6 0.5716 -8.2456 3.8665 16 9 0.8475 -9.4134 3.2458 17 6 1.3687 -7.1336 3.6397 18 9 2.4218 -7.2168 2.7976 19 6 2.2801 -2.8463 -0.0636 20 6 1.7691 -2.1410 -1.3238 21 7 2.0225 -0.6994 -1.1945 22 6 2.7051 -0.0210 -2.1686 23 1 3.2733 0.8617 -1.9147 24 6 2.6667 -0.4677 -3.4823 25 7 1.7342 -1.3152 -3.8623 26 14 3.9386 0.1342 -4.7110 27 1 5.0585 -0.8384 -4.7807 28 1 3.3107 0.2629 -6.0505 29 1 4.4576 1.4566 -4.2785 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3634 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 1.6075 -0.2784 2.1368 34 1 3.1297 -0.6503 1.2912 35 1 2.8598 -2.5529 2.8738 36 1 1.8827 -4.0560 4.8857 37 1 2.9836 -5.0436 3.8954 38 1 -0.2220 -4.9183 5.6267 39 1 -1.6308 -6.8941 6.0365 40 1 -1.1280 -9.0231 4.9069 41 1 3.3640 -2.7473 -0.0054 42 1 2.0124 -3.9022 -0.1038 43 1 2.2945 -2.5274 -2.1972 44 1 0.6987 -2.3156 -1.4317 45 1 1.7072 -1.6271 -4.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947754923.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:01 Heat of formation + Delta-G solvation = -106.608945 kcal Electronic energy + Delta-G solvation = -29504.359548 eV Core-core repulsion = 25157.165247 eV Total energy + Delta-G solvation = -4347.194301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.53538 -49.63131 -41.19493 -39.95354 -39.08979 -36.00488 -34.35691 -33.90533 -32.46761 -31.37566 -31.27484 -29.08958 -28.17405 -26.16449 -24.08524 -23.82768 -23.60896 -22.82672 -21.41671 -20.07393 -19.02802 -18.78209 -18.33014 -17.99187 -17.94130 -17.29263 -17.23813 -16.55996 -16.11570 -16.04272 -15.74889 -15.63872 -15.52411 -15.44121 -15.08330 -14.60963 -14.54670 -14.38298 -14.12908 -13.97289 -13.88962 -13.16749 -13.15965 -13.01093 -12.90508 -12.69024 -12.66625 -12.55308 -12.31322 -12.20919 -12.03565 -11.98952 -11.76663 -11.48993 -11.15917 -10.87399 -10.56624 -9.97112 -9.89789 -9.73444 -8.69407 -7.86153 -5.31541 -0.04911 -0.02959 1.46163 1.47825 1.56779 1.66997 2.13802 2.51126 2.53399 2.81843 3.28054 3.29597 3.45607 3.61459 3.76828 3.81202 3.92964 4.03366 4.10343 4.19921 4.31003 4.34345 4.44631 4.51692 4.52565 4.71189 4.75405 4.81298 4.85116 4.88421 4.93825 4.99925 5.09854 5.14965 5.17108 5.17617 5.28494 5.34609 5.43638 5.51066 5.61268 5.67970 5.75313 5.78762 6.40323 6.63884 7.14986 7.33757 7.87454 8.39621 9.20365 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.002588 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.249702 B =10815.601142 C =11574.799223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.071 0.929 4 C -0.116 4.116 5 C 0.162 3.838 6 H 0.063 0.937 7 N -0.710 5.710 8 C 0.508 3.492 9 O -0.583 6.583 10 C -0.096 4.096 11 C -0.084 4.084 12 C -0.085 4.085 13 C -0.090 4.090 14 C -0.125 4.125 15 C 0.035 3.965 16 F -0.146 7.146 17 C 0.045 3.955 18 F -0.147 7.147 19 C -0.133 4.133 20 C 0.186 3.814 21 N -0.600 5.600 22 C -0.256 4.256 23 H 0.074 0.926 24 C -0.054 4.054 25 N -0.937 5.937 26 Si 0.965 3.035 27 H -0.290 1.290 28 H -0.299 1.299 29 H -0.263 1.263 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.026 0.974 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.417 0.583 36 H 0.159 0.841 37 H 0.118 0.882 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.168 0.832 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.049 0.951 44 H -0.011 1.011 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -7.316 26.915 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.089 0.911 4 C -0.156 4.156 5 C 0.057 3.943 6 H 0.081 0.919 7 N -0.361 5.361 8 C 0.296 3.704 9 O -0.463 6.463 10 C -0.135 4.135 11 C -0.085 4.085 12 C -0.103 4.103 13 C -0.107 4.107 14 C -0.143 4.143 15 C 0.015 3.985 16 F -0.125 7.125 17 C 0.025 3.975 18 F -0.126 7.126 19 C -0.174 4.174 20 C 0.059 3.941 21 N -0.322 5.322 22 C -0.386 4.386 23 H 0.092 0.908 24 C -0.250 4.250 25 N -0.584 5.584 26 Si 0.794 3.206 27 H -0.217 1.217 28 H -0.226 1.226 29 H -0.187 1.187 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.254 0.746 36 H 0.177 0.823 37 H 0.136 0.864 38 H 0.190 0.810 39 H 0.198 0.802 40 H 0.186 0.814 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.007 0.993 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.288 -7.692 26.261 27.460 hybrid contribution 1.076 -0.414 -2.015 2.322 sum -1.212 -8.106 24.246 25.594 Atomic orbital electron populations 1.22184 0.98202 1.00198 1.00617 1.20742 0.92203 0.95560 0.86290 0.91055 1.22124 1.01897 0.92637 0.98893 1.20678 0.98204 0.92168 0.83207 0.91901 1.46017 1.35205 1.26949 1.27972 1.21087 0.82371 0.80502 0.86483 1.90736 1.30361 1.66409 1.58805 1.20720 1.00518 0.94810 0.97487 1.19560 0.98977 0.91976 0.98034 1.21484 0.91714 1.01007 0.96106 1.21555 1.00053 0.90424 0.98699 1.21480 0.95226 1.01935 0.95706 1.18113 0.99373 0.81063 0.99946 1.91476 1.93652 1.45840 1.81558 1.18003 0.88482 0.95675 0.95322 1.91461 1.54801 1.96940 1.69390 1.22329 1.00268 0.97924 0.96836 1.20379 0.95274 0.83868 0.94555 1.44381 1.64136 1.03470 1.20215 1.19568 1.21546 1.10210 0.87304 0.90844 1.25829 0.99529 1.00810 0.98790 1.70208 1.33745 1.37652 1.16756 0.85272 0.78728 0.78442 0.78150 1.21699 1.22624 1.18689 0.94880 0.90401 0.95448 0.88533 0.90814 0.74612 0.82287 0.86409 0.80981 0.80173 0.81407 0.92284 0.94589 0.93215 0.99316 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 9.03 71.98 0.65 -5.05 16 2 C 0.16 6.10 3.29 44.98 0.15 6.25 16 3 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 4 C -0.12 -3.37 5.02 30.67 0.15 -3.22 16 5 C 0.16 5.31 2.21 45.02 0.10 5.41 16 6 H 0.06 2.40 5.92 -2.39 -0.01 2.39 16 7 N -0.71 -16.95 5.08 -442.40 -2.25 -19.19 16 8 C 0.51 13.30 7.79 87.66 0.68 13.98 16 9 O -0.58 -21.74 15.70 -3.03 -0.05 -21.79 16 10 C -0.10 -1.53 5.60 29.10 0.16 -1.37 16 11 C -0.08 -1.65 4.38 -19.83 -0.09 -1.74 16 12 C -0.09 -1.12 9.68 22.27 0.22 -0.90 16 13 C -0.09 -0.99 10.04 22.27 0.22 -0.76 16 14 C -0.12 -1.94 10.02 22.31 0.22 -1.72 16 15 C 0.03 0.84 7.31 22.41 0.16 1.00 16 16 F -0.15 -4.01 17.18 44.97 0.77 -3.24 16 17 C 0.05 1.17 7.25 22.41 0.16 1.34 16 18 F -0.15 -4.56 16.48 44.97 0.74 -3.81 16 19 C -0.13 -5.48 5.65 30.67 0.17 -5.31 16 20 C 0.19 9.49 4.89 86.36 0.42 9.91 16 21 N -0.60 -29.61 2.70 -675.22 -1.82 -31.43 16 22 C -0.26 -13.91 9.58 84.03 0.81 -13.10 16 23 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 24 C -0.05 -3.08 4.91 84.86 0.42 -2.66 16 25 N -0.94 -57.22 11.19 21.65 0.24 -56.97 16 26 Si 0.97 45.45 29.59 68.60 2.03 47.48 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 29 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 30 H 0.03 1.32 5.72 -2.38 -0.01 1.31 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.42 6.49 8.60 -92.70 -0.80 5.70 16 36 H 0.16 0.97 8.05 -2.39 -0.02 0.95 16 37 H 0.12 1.67 7.79 -2.39 -0.02 1.65 16 38 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 39 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 40 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.05 2.90 6.04 -2.39 -0.01 2.89 16 44 H -0.01 -0.63 7.50 -2.39 -0.02 -0.65 16 45 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -79.62 372.68 4.51 -75.11 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.23 Total: 11.81 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 4.62 Total: 2.05 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -3.83 Total: -107.60 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 1.51 Total: -7.05 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -79.62 4.51 -75.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947754923.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.501 kcal (2) G-P(sol) polarization free energy of solvation -79.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds