Wall clock time and date at job start Tue Mar 31 2020 21:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08991 * 109.58681 * 2 1 4 4 C 1.53196 * 109.69967 * 239.63947 * 2 1 3 5 5 C 1.53035 * 109.31544 * 294.78224 * 4 2 1 6 6 H 1.09007 * 109.46247 * 58.65356 * 5 4 2 7 7 N 1.46496 * 109.45950 * 178.61553 * 5 4 2 8 8 C 1.34781 * 119.99901 * 204.99719 * 7 5 4 9 9 O 1.21281 * 120.00306 * 0.02562 * 8 7 5 10 10 C 1.50699 * 119.99770 * 179.97438 * 8 7 5 11 11 C 1.50703 * 109.47022 * 180.02562 * 10 8 7 12 12 C 1.38254 * 119.99881 * 264.72523 * 11 10 8 13 13 C 1.38222 * 120.06635 * 179.76908 * 12 11 10 14 14 C 1.38251 * 120.07093 * 0.50765 * 13 12 11 15 15 C 1.38369 * 120.00152 * 359.74454 * 14 13 12 16 16 F 1.35099 * 120.03212 * 180.02562 * 15 14 13 17 17 C 1.38369 * 120.00153 * 85.00051 * 11 10 8 18 18 F 1.35105 * 120.03146 * 359.95835 * 17 11 10 19 19 C 1.53040 * 109.54030 * 298.63695 * 5 4 2 20 20 C 1.52759 * 109.38307 * 61.23591 * 19 5 4 21 21 N 1.46924 * 109.58213 * 120.28432 * 2 1 3 22 22 C 1.36932 * 120.62997 * 246.29319 * 21 2 1 23 23 H 1.08004 * 120.00337 * 332.40982 * 22 21 2 24 24 C 1.38810 * 120.00300 * 152.41275 * 22 21 2 25 25 N 1.31619 * 119.99822 * 342.74769 * 24 22 21 26 26 Si 1.86803 * 120.00377 * 162.75015 * 24 22 21 27 27 H 1.48501 * 109.47245 * 94.35296 * 26 24 22 28 28 H 1.48503 * 109.47218 * 214.35394 * 26 24 22 29 29 H 1.48504 * 109.46956 * 334.35212 * 26 24 22 30 30 H 1.09002 * 109.46584 * 299.71954 * 1 2 3 31 31 H 1.09005 * 109.46983 * 59.71239 * 1 2 3 32 32 H 1.08992 * 109.47590 * 179.72083 * 1 2 3 33 33 H 1.09006 * 109.49409 * 54.73460 * 4 2 1 34 34 H 1.09001 * 109.49255 * 174.79259 * 4 2 1 35 35 H 0.97003 * 120.00090 * 24.99904 * 7 5 4 36 36 H 1.08996 * 109.47629 * 299.99964 * 10 8 7 37 37 H 1.08997 * 109.47004 * 60.00677 * 10 8 7 38 38 H 1.07997 * 119.96822 * 0.02562 * 12 11 10 39 39 H 1.08000 * 119.96232 * 180.23466 * 13 12 11 40 40 H 1.08005 * 119.99715 * 179.77167 * 14 13 12 41 41 H 1.08994 * 109.49866 * 181.31831 * 19 5 4 42 42 H 1.09003 * 109.49474 * 301.41809 * 19 5 4 43 43 H 1.09005 * 109.51111 * 185.71070 * 20 19 5 44 44 H 1.09001 * 109.42822 * 65.43142 * 20 19 5 45 45 H 0.97004 * 119.99845 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0465 -0.7290 -1.2445 5 6 1.6472 -2.2044 -1.1691 6 1 0.5623 -2.2839 -1.0994 7 7 2.1108 -2.8977 -2.3734 8 6 1.4862 -4.0174 -2.7890 9 8 0.5400 -4.4507 -2.1663 10 6 1.9629 -4.7302 -4.0283 11 6 1.1016 -5.9424 -4.2731 12 6 1.5050 -7.1816 -3.8115 13 6 0.7139 -8.2935 -4.0311 14 6 -0.4774 -8.1707 -4.7219 15 6 -0.8814 -6.9327 -5.1897 16 9 -2.0456 -6.8118 -5.8644 17 6 -0.0901 -5.8161 -4.9648 18 9 -0.4827 -4.6063 -5.4203 19 6 2.2855 -2.8450 0.0656 20 6 1.7767 -2.1411 1.3223 21 7 2.0225 -0.6981 1.1954 22 6 2.7027 -0.0179 2.1699 23 1 3.2655 0.8686 1.9172 24 6 2.6688 -0.4676 3.4827 25 7 1.7397 -1.3187 3.8630 26 14 3.9419 0.1352 4.7097 27 1 3.3995 1.3001 5.4539 28 1 4.2645 -0.9556 5.6645 29 1 5.1739 0.5400 3.9861 30 1 -0.3632 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0275 -0.0050 33 1 1.6106 -0.2792 -2.1366 34 1 3.1325 -0.6473 -1.2895 35 1 2.8674 -2.5509 -2.8717 36 1 1.8944 -4.0577 -4.8833 37 1 2.9986 -5.0414 -3.8927 38 1 2.4372 -7.2803 -3.2752 39 1 1.0288 -9.2601 -3.6665 40 1 -1.0929 -9.0409 -4.8961 41 1 2.0198 -3.9012 0.1059 42 1 3.3693 -2.7438 0.0086 43 1 2.3049 -2.5264 2.1945 44 1 0.7073 -2.3214 1.4310 45 1 1.7158 -1.6327 4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947754924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:05 Heat of formation + Delta-G solvation = -86.139634 kcal Electronic energy + Delta-G solvation = -29452.239615 eV Core-core repulsion = 25105.932930 eV Total energy + Delta-G solvation = -4346.306685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.63796 -48.71876 -40.09726 -38.98673 -37.67724 -34.49052 -33.19925 -32.48721 -30.85644 -30.56399 -29.69066 -27.97867 -26.78822 -24.32994 -23.10145 -22.92677 -21.93543 -21.54515 -20.26389 -18.47723 -18.08673 -17.54655 -17.29813 -17.11949 -16.64960 -16.26957 -15.84905 -15.14980 -15.09881 -14.99201 -14.72225 -14.55280 -14.02752 -13.88234 -13.73815 -13.55613 -13.30423 -13.08036 -12.74981 -12.53599 -12.39198 -12.26174 -12.21370 -11.93958 -11.52408 -11.40731 -11.07414 -10.93425 -10.79014 -10.60327 -10.35051 -10.20355 -10.05676 -9.80094 -9.71634 -9.40399 -9.12046 -8.96948 -8.72401 -8.40963 -6.68780 -5.78583 -3.20809 0.67463 0.69515 2.73841 2.98021 3.36522 3.44195 3.44793 3.46199 3.54655 4.06968 4.17735 4.39167 4.48433 4.62659 4.77483 4.85477 5.00593 5.11248 5.29128 5.38884 5.39950 5.46979 5.53485 5.60255 5.67137 5.79286 5.80153 5.95078 6.02510 6.06685 6.26719 6.31626 6.43230 6.45835 6.48174 6.58499 6.66175 6.79110 6.88641 6.95939 7.16477 7.38772 7.65855 7.71174 7.79849 8.36953 8.45467 9.21315 9.84966 10.41665 11.29773 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.002457 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.548034 B =11394.320368 C =11848.301688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.065 0.935 4 C -0.132 4.132 5 C 0.149 3.851 6 H 0.085 0.915 7 N -0.724 5.724 8 C 0.512 3.488 9 O -0.531 6.531 10 C -0.106 4.106 11 C -0.068 4.068 12 C -0.088 4.088 13 C -0.099 4.099 14 C -0.128 4.128 15 C 0.066 3.934 16 F -0.130 7.130 17 C 0.082 3.918 18 F -0.126 7.126 19 C -0.146 4.146 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.253 4.253 23 H 0.065 0.935 24 C 0.003 3.997 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.395 0.605 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.020 0.980 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 -11.889 -19.922 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.083 0.917 4 C -0.172 4.172 5 C 0.046 3.954 6 H 0.103 0.897 7 N -0.374 5.374 8 C 0.297 3.703 9 O -0.408 6.408 10 C -0.146 4.146 11 C -0.070 4.070 12 C -0.107 4.107 13 C -0.117 4.117 14 C -0.147 4.147 15 C 0.046 3.954 16 F -0.109 7.109 17 C 0.062 3.938 18 F -0.104 7.104 19 C -0.186 4.186 20 C 0.047 3.953 21 N -0.307 5.307 22 C -0.383 4.383 23 H 0.083 0.917 24 C -0.196 4.196 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.038 0.962 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.683 -12.199 -19.313 22.853 hybrid contribution 0.599 0.671 0.269 0.939 sum 1.281 -11.528 -19.044 22.298 Atomic orbital electron populations 1.22304 0.98691 1.01113 1.00086 1.20435 0.91787 0.95102 0.86487 0.91671 1.22295 1.01135 0.94168 0.99609 1.21114 0.99823 0.91316 0.83132 0.89711 1.46303 1.34778 1.26921 1.29371 1.20257 0.83344 0.81115 0.85629 1.90748 1.27652 1.65376 1.56975 1.20666 1.00393 0.95129 0.98447 1.19263 0.93739 0.95920 0.98066 1.21016 1.00671 0.90828 0.98151 1.21043 0.93449 0.99518 0.97700 1.21083 0.98301 0.95657 0.99681 1.17638 0.84152 0.93982 0.99610 1.91526 1.45055 1.96686 1.77611 1.17467 0.95041 0.80129 1.01165 1.91522 1.90587 1.41548 1.86778 1.22487 1.00113 0.99140 0.96868 1.20646 0.97787 0.82918 0.93909 1.44148 1.64020 1.03319 1.19164 1.19152 1.22251 1.10081 0.86772 0.91694 1.25044 0.97754 0.99973 0.96786 1.70043 1.31927 1.35519 1.16871 0.86318 0.81583 0.77874 0.81198 1.21494 1.21610 1.20477 0.92590 0.94501 0.93233 0.92600 0.91869 0.77172 0.87536 0.86996 0.84218 0.84111 0.83765 0.92951 0.92722 0.89331 0.96156 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.04 37.16 0.34 -2.82 16 2 C 0.17 3.42 3.28 -67.59 -0.22 3.20 16 3 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 4 C -0.13 -2.16 5.02 -26.61 -0.13 -2.30 16 5 C 0.15 2.54 2.21 -67.89 -0.15 2.39 16 6 H 0.08 1.67 5.94 -51.93 -0.31 1.36 16 7 N -0.72 -9.62 5.08 -53.77 -0.27 -9.89 16 8 C 0.51 7.17 7.79 -10.98 -0.09 7.09 16 9 O -0.53 -9.92 15.70 5.56 0.09 -9.83 16 10 C -0.11 -1.01 5.60 -29.03 -0.16 -1.17 16 11 C -0.07 -0.74 4.38 -104.57 -0.46 -1.19 16 12 C -0.09 -0.77 9.68 -39.58 -0.38 -1.15 16 13 C -0.10 -0.75 10.04 -39.58 -0.40 -1.15 16 14 C -0.13 -1.11 10.02 -39.53 -0.40 -1.51 16 15 C 0.07 0.76 7.31 -39.37 -0.29 0.48 16 16 F -0.13 -1.62 17.18 2.25 0.04 -1.59 16 17 C 0.08 1.02 7.25 -39.37 -0.29 0.74 16 18 F -0.13 -1.74 16.48 2.25 0.04 -1.71 16 19 C -0.15 -2.84 5.64 -26.83 -0.15 -3.00 16 20 C 0.17 4.15 4.87 -3.93 -0.02 4.13 16 21 N -0.58 -14.17 2.70 -165.03 -0.45 -14.62 16 22 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 23 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 24 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 25 N -0.90 -25.95 11.19 55.49 0.62 -25.33 16 26 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.00 5.76 -51.93 -0.30 0.71 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.39 3.92 8.60 -40.82 -0.35 3.57 16 36 H 0.11 0.84 7.79 -51.93 -0.40 0.44 16 37 H 0.11 0.70 8.05 -51.93 -0.42 0.28 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 2.38 6.05 -51.93 -0.31 2.06 16 44 H 0.02 0.52 7.52 -51.93 -0.39 0.13 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -32.86 372.73 -8.62 -41.48 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.25 Total: 2.65 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.03 Total: -3.18 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.10 Total: -49.84 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.08 Total: -3.29 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.86 -8.62 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947754924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.655 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds