Wall clock time and date at job start Tue Mar 31 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08991 * 109.58681 * 2 1 4 4 C 1.53196 * 109.69967 * 239.63947 * 2 1 3 5 5 C 1.53035 * 109.31544 * 294.78224 * 4 2 1 6 6 H 1.09007 * 109.46247 * 58.65356 * 5 4 2 7 7 N 1.46496 * 109.45950 * 178.61553 * 5 4 2 8 8 C 1.34781 * 119.99901 * 204.99719 * 7 5 4 9 9 O 1.21281 * 120.00306 * 0.02562 * 8 7 5 10 10 C 1.50699 * 119.99770 * 179.97438 * 8 7 5 11 11 C 1.50703 * 109.47022 * 180.02562 * 10 8 7 12 12 C 1.38254 * 119.99881 * 264.72523 * 11 10 8 13 13 C 1.38222 * 120.06635 * 179.76908 * 12 11 10 14 14 C 1.38251 * 120.07093 * 0.50765 * 13 12 11 15 15 C 1.38369 * 120.00152 * 359.74454 * 14 13 12 16 16 F 1.35099 * 120.03212 * 180.02562 * 15 14 13 17 17 C 1.38369 * 120.00153 * 85.00051 * 11 10 8 18 18 F 1.35105 * 120.03146 * 359.95835 * 17 11 10 19 19 C 1.53040 * 109.54030 * 298.63695 * 5 4 2 20 20 C 1.52759 * 109.38307 * 61.23591 * 19 5 4 21 21 N 1.46924 * 109.58213 * 120.28432 * 2 1 3 22 22 C 1.36932 * 120.62997 * 246.29319 * 21 2 1 23 23 H 1.08004 * 120.00337 * 332.40982 * 22 21 2 24 24 C 1.38810 * 120.00300 * 152.41275 * 22 21 2 25 25 N 1.31619 * 119.99822 * 342.74769 * 24 22 21 26 26 Si 1.86803 * 120.00377 * 162.75015 * 24 22 21 27 27 H 1.48501 * 109.47245 * 94.35296 * 26 24 22 28 28 H 1.48503 * 109.47218 * 214.35394 * 26 24 22 29 29 H 1.48504 * 109.46956 * 334.35212 * 26 24 22 30 30 H 1.09002 * 109.46584 * 299.71954 * 1 2 3 31 31 H 1.09005 * 109.46983 * 59.71239 * 1 2 3 32 32 H 1.08992 * 109.47590 * 179.72083 * 1 2 3 33 33 H 1.09006 * 109.49409 * 54.73460 * 4 2 1 34 34 H 1.09001 * 109.49255 * 174.79259 * 4 2 1 35 35 H 0.97003 * 120.00090 * 24.99904 * 7 5 4 36 36 H 1.08996 * 109.47629 * 299.99964 * 10 8 7 37 37 H 1.08997 * 109.47004 * 60.00677 * 10 8 7 38 38 H 1.07997 * 119.96822 * 0.02562 * 12 11 10 39 39 H 1.08000 * 119.96232 * 180.23466 * 13 12 11 40 40 H 1.08005 * 119.99715 * 179.77167 * 14 13 12 41 41 H 1.08994 * 109.49866 * 181.31831 * 19 5 4 42 42 H 1.09003 * 109.49474 * 301.41809 * 19 5 4 43 43 H 1.09005 * 109.51111 * 185.71070 * 20 19 5 44 44 H 1.09001 * 109.42822 * 65.43142 * 20 19 5 45 45 H 0.97004 * 119.99845 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0465 -0.7290 -1.2445 5 6 1.6472 -2.2044 -1.1691 6 1 0.5623 -2.2839 -1.0994 7 7 2.1108 -2.8977 -2.3734 8 6 1.4862 -4.0174 -2.7890 9 8 0.5400 -4.4507 -2.1663 10 6 1.9629 -4.7302 -4.0283 11 6 1.1016 -5.9424 -4.2731 12 6 1.5050 -7.1816 -3.8115 13 6 0.7139 -8.2935 -4.0311 14 6 -0.4774 -8.1707 -4.7219 15 6 -0.8814 -6.9327 -5.1897 16 9 -2.0456 -6.8118 -5.8644 17 6 -0.0901 -5.8161 -4.9648 18 9 -0.4827 -4.6063 -5.4203 19 6 2.2855 -2.8450 0.0656 20 6 1.7767 -2.1411 1.3223 21 7 2.0225 -0.6981 1.1954 22 6 2.7027 -0.0179 2.1699 23 1 3.2655 0.8686 1.9172 24 6 2.6688 -0.4676 3.4827 25 7 1.7397 -1.3187 3.8630 26 14 3.9419 0.1352 4.7097 27 1 3.3995 1.3001 5.4539 28 1 4.2645 -0.9556 5.6645 29 1 5.1739 0.5400 3.9861 30 1 -0.3632 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0275 -0.0050 33 1 1.6106 -0.2792 -2.1366 34 1 3.1325 -0.6473 -1.2895 35 1 2.8674 -2.5509 -2.8717 36 1 1.8944 -4.0577 -4.8833 37 1 2.9986 -5.0414 -3.8927 38 1 2.4372 -7.2803 -3.2752 39 1 1.0288 -9.2601 -3.6665 40 1 -1.0929 -9.0409 -4.8961 41 1 2.0198 -3.9012 0.1059 42 1 3.3693 -2.7438 0.0086 43 1 2.3049 -2.5264 2.1945 44 1 0.7073 -2.3214 1.4310 45 1 1.7158 -1.6327 4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947754924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:04 Heat of formation + Delta-G solvation = -106.104147 kcal Electronic energy + Delta-G solvation = -29453.105341 eV Core-core repulsion = 25105.932930 eV Total energy + Delta-G solvation = -4347.172411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.52814 -49.62206 -41.19537 -39.95679 -39.09247 -35.99944 -34.35438 -33.90847 -32.48154 -31.36858 -31.27700 -29.09415 -28.19134 -26.15763 -24.08876 -23.83444 -23.58831 -22.82720 -21.41634 -20.07022 -19.02717 -18.76526 -18.33702 -17.98827 -17.95301 -17.27538 -17.22408 -16.54423 -16.11434 -16.03146 -15.76596 -15.60624 -15.51700 -15.47920 -15.07343 -14.60672 -14.49732 -14.41409 -14.14363 -14.01915 -13.84985 -13.16038 -13.15672 -13.01796 -12.92644 -12.67639 -12.62514 -12.57966 -12.28711 -12.21036 -12.03542 -12.00817 -11.76974 -11.48022 -11.16018 -10.87100 -10.54846 -9.96593 -9.89837 -9.73599 -8.68045 -7.85030 -5.29878 -0.05118 -0.03347 1.47620 1.49244 1.59043 1.67467 2.13088 2.52571 2.53036 2.80608 3.27488 3.30878 3.45469 3.61952 3.76270 3.80989 3.92572 4.03536 4.10118 4.19291 4.30033 4.34236 4.45816 4.51260 4.51641 4.69859 4.78967 4.80362 4.83525 4.87851 4.93910 4.99288 5.09624 5.15054 5.16354 5.16830 5.28706 5.32711 5.45004 5.50941 5.61401 5.69007 5.76183 5.78044 6.41487 6.63866 7.16580 7.33728 7.88558 8.40850 9.21749 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.002457 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.548034 B =11394.320368 C =11848.301688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.070 0.930 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.056 0.944 7 N -0.710 5.710 8 C 0.508 3.492 9 O -0.584 6.584 10 C -0.096 4.096 11 C -0.084 4.084 12 C -0.089 4.089 13 C -0.091 4.091 14 C -0.125 4.125 15 C 0.038 3.962 16 F -0.145 7.145 17 C 0.050 3.950 18 F -0.144 7.144 19 C -0.129 4.129 20 C 0.185 3.815 21 N -0.599 5.599 22 C -0.257 4.257 23 H 0.072 0.928 24 C -0.053 4.053 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.289 1.289 28 H -0.296 1.296 29 H -0.266 1.266 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.417 0.583 36 H 0.124 0.876 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.169 0.831 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.053 0.947 44 H -0.015 1.015 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 -12.403 -21.895 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.088 0.912 4 C -0.157 4.157 5 C 0.056 3.944 6 H 0.074 0.926 7 N -0.361 5.361 8 C 0.296 3.704 9 O -0.463 6.463 10 C -0.135 4.135 11 C -0.085 4.085 12 C -0.107 4.107 13 C -0.109 4.109 14 C -0.144 4.144 15 C 0.018 3.982 16 F -0.123 7.123 17 C 0.030 3.970 18 F -0.123 7.123 19 C -0.170 4.170 20 C 0.058 3.942 21 N -0.322 5.322 22 C -0.388 4.388 23 H 0.090 0.910 24 C -0.248 4.248 25 N -0.583 5.583 26 Si 0.794 3.206 27 H -0.216 1.216 28 H -0.223 1.223 29 H -0.190 1.190 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.254 0.746 36 H 0.142 0.858 37 H 0.171 0.829 38 H 0.185 0.815 39 H 0.195 0.805 40 H 0.186 0.814 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.004 0.996 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.213 -12.685 -21.355 25.045 hybrid contribution -0.229 0.791 0.868 1.197 sum 2.983 -11.894 -20.486 23.876 Atomic orbital electron populations 1.22194 0.98523 1.00122 1.00441 1.20706 0.91944 0.95589 0.86465 0.91193 1.22121 1.02025 0.92928 0.98628 1.20675 0.97970 0.92117 0.83638 0.92569 1.46011 1.35369 1.26658 1.28092 1.21078 0.82305 0.80686 0.86357 1.90737 1.29974 1.66697 1.58913 1.20715 1.02006 0.94588 0.96231 1.19534 0.93439 0.97332 0.98192 1.21468 1.01704 0.90277 0.97242 1.21530 0.92369 1.00872 0.96084 1.21465 0.98951 0.95227 0.98708 1.18057 0.84140 0.95155 1.00878 1.91478 1.45881 1.96848 1.78123 1.17898 0.96439 0.79824 1.02889 1.91459 1.90947 1.42599 1.87250 1.22224 1.00439 0.98262 0.96037 1.20325 0.95281 0.83690 0.94905 1.44364 1.64322 1.03498 1.19977 1.19538 1.21877 1.09939 0.87399 0.91011 1.25815 0.99592 1.00741 0.98688 1.70219 1.33890 1.37391 1.16791 0.85290 0.79641 0.76869 0.78800 1.21568 1.22271 1.19006 0.95320 0.90898 0.94932 0.89340 0.90432 0.74606 0.85793 0.82892 0.81512 0.80473 0.81380 0.93641 0.91778 0.92836 0.99646 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 9.04 71.98 0.65 -5.31 16 2 C 0.16 6.26 3.28 44.98 0.15 6.40 16 3 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 4 C -0.12 -3.52 5.02 30.67 0.15 -3.37 16 5 C 0.16 5.28 2.21 45.02 0.10 5.38 16 6 H 0.06 2.22 5.94 -2.38 -0.01 2.21 16 7 N -0.71 -16.96 5.08 -442.41 -2.25 -19.21 16 8 C 0.51 13.30 7.79 87.66 0.68 13.99 16 9 O -0.58 -21.74 15.70 -3.03 -0.05 -21.79 16 10 C -0.10 -1.53 5.60 29.10 0.16 -1.37 16 11 C -0.08 -1.64 4.38 -19.83 -0.09 -1.73 16 12 C -0.09 -1.27 9.68 22.27 0.22 -1.06 16 13 C -0.09 -1.09 10.04 22.27 0.22 -0.87 16 14 C -0.13 -1.95 10.02 22.30 0.22 -1.72 16 15 C 0.04 0.87 7.31 22.41 0.16 1.03 16 16 F -0.14 -3.74 17.18 44.97 0.77 -2.96 16 17 C 0.05 1.23 7.25 22.41 0.16 1.39 16 18 F -0.14 -4.08 16.48 44.97 0.74 -3.34 16 19 C -0.13 -5.04 5.64 30.53 0.17 -4.86 16 20 C 0.18 9.17 4.87 86.22 0.42 9.59 16 21 N -0.60 -29.36 2.70 -676.04 -1.83 -31.19 16 22 C -0.26 -13.85 9.58 84.03 0.81 -13.04 16 23 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 24 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 25 N -0.94 -56.24 11.19 21.65 0.24 -55.99 16 26 Si 0.97 44.62 29.59 68.60 2.03 46.65 16 27 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 29 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.03 1.35 5.76 -2.39 -0.01 1.34 16 33 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.42 6.51 8.60 -92.71 -0.80 5.71 16 36 H 0.12 1.57 7.79 -2.39 -0.02 1.56 16 37 H 0.15 1.15 8.05 -2.39 -0.02 1.14 16 38 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 40 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.05 3.01 6.05 -2.38 -0.01 3.00 16 44 H -0.01 -0.81 7.52 -2.39 -0.02 -0.82 16 45 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -77.14 372.73 4.50 -72.64 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.23 Total: 13.31 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 4.61 Total: 1.90 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -3.83 Total: -106.39 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 1.51 Total: -6.30 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -77.14 4.50 -72.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947754924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.466 kcal (2) G-P(sol) polarization free energy of solvation -77.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds