Wall clock time and date at job start Tue Mar 31 2020 21:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47366 * 2 1 4 4 C 1.50709 * 109.46959 * 119.99829 * 2 1 3 5 5 N 1.31238 * 124.05164 * 300.02321 * 4 2 1 6 6 N 1.27338 * 120.03310 * 179.97438 * 5 4 2 7 7 S 1.56631 * 109.74366 * 359.69447 * 6 5 4 8 8 C 1.38246 * 124.05346 * 119.99986 * 4 2 1 9 9 C 1.47168 * 128.47785 * 0.02562 * 8 4 2 10 10 O 1.21620 * 120.00041 * 359.97438 * 9 8 4 11 11 N 1.34781 * 119.99861 * 180.02562 * 9 8 4 12 12 C 1.46499 * 119.99710 * 179.97438 * 11 9 8 13 13 H 1.08990 * 109.46230 * 34.97329 * 12 11 9 14 14 C 1.53039 * 109.45823 * 274.99746 * 12 11 9 15 15 C 1.53191 * 109.31106 * 178.61742 * 14 12 11 16 16 N 1.46925 * 108.77889 * 54.63654 * 15 14 12 17 17 C 1.36931 * 120.63447 * 126.36404 * 16 15 14 18 18 H 1.07999 * 120.00105 * 210.77882 * 17 16 15 19 19 C 1.38813 * 119.99704 * 30.78148 * 17 16 15 20 20 N 1.31625 * 119.99807 * 197.75940 * 19 17 16 21 21 Si 1.86798 * 120.00409 * 17.75283 * 19 17 16 22 22 H 1.48510 * 109.46985 * 273.13325 * 21 19 17 23 23 H 1.48507 * 109.46757 * 33.12720 * 21 19 17 24 24 H 1.48497 * 109.47439 * 153.12953 * 21 19 17 25 25 C 1.46929 * 118.73438 * 306.64433 * 16 15 14 26 26 H 1.08996 * 109.58829 * 293.56738 * 25 16 15 27 27 C 1.53002 * 109.58626 * 173.14206 * 25 16 15 28 28 C 1.52761 * 109.01101 * 53.30907 * 25 16 15 29 29 H 1.09003 * 109.47127 * 300.00329 * 1 2 3 30 30 H 1.09000 * 109.47033 * 60.00297 * 1 2 3 31 31 H 1.08999 * 109.46907 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47570 * 239.99843 * 2 1 3 33 33 H 1.08995 * 109.47263 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46801 * 299.99844 * 3 2 1 35 35 H 1.08999 * 109.46904 * 59.99435 * 3 2 1 36 36 H 0.97003 * 119.99518 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.49972 * 58.66762 * 14 12 11 38 38 H 1.09001 * 109.49693 * 298.56750 * 14 12 11 39 39 H 1.09001 * 109.58789 * 294.84717 * 15 14 12 40 40 H 1.09003 * 109.58349 * 174.42097 * 15 14 12 41 41 H 0.96998 * 119.99952 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.46910 * 59.99485 * 27 25 16 43 43 H 1.08996 * 109.47443 * 179.97438 * 27 25 16 44 44 H 1.09000 * 109.47078 * 299.99966 * 27 25 16 45 45 H 1.08998 * 109.56746 * 185.55244 * 28 25 16 46 46 H 1.09000 * 109.36030 * 65.49591 * 28 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7643 -0.3321 2.4583 6 7 2.2294 -0.9907 3.4440 7 16 3.0752 -2.2004 2.9202 8 6 2.8303 -1.8390 1.2014 9 6 3.3452 -2.5663 0.0302 10 8 3.0739 -2.1826 -1.0915 11 7 4.1166 -3.6583 0.2008 12 6 4.6287 -4.3827 -0.9650 13 1 4.8502 -3.6750 -1.7638 14 6 3.5751 -5.3825 -1.4473 15 6 4.1003 -6.1134 -2.6869 16 7 5.4011 -6.7158 -2.3651 17 6 5.6243 -8.0498 -2.5789 18 1 6.3073 -8.5920 -1.9418 19 6 4.9727 -8.7052 -3.6146 20 7 4.9000 -10.0195 -3.6192 21 14 4.1987 -7.7222 -5.0017 22 1 2.8169 -7.3330 -4.6215 23 1 5.0055 -6.5009 -5.2529 24 1 4.1585 -8.5509 -6.2333 25 6 6.4560 -5.8609 -1.8037 26 1 6.7703 -5.1310 -2.5496 27 6 7.6502 -6.7238 -1.3911 28 6 5.9063 -5.1317 -0.5791 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 4.3326 -3.9645 1.0955 37 1 2.6578 -4.8508 -1.6998 38 1 3.3715 -6.1056 -0.6575 39 1 4.2186 -5.4045 -3.5064 40 1 3.3972 -6.8947 -2.9756 41 1 4.4450 -10.4775 -4.3432 42 1 8.0366 -7.2504 -2.2638 43 1 8.4317 -6.0878 -0.9754 44 1 7.3331 -7.4480 -0.6408 45 1 6.6480 -4.4215 -0.2137 46 1 5.6807 -5.8572 0.2024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947842732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:57 Heat of formation + Delta-G solvation = 48.475353 kcal Electronic energy + Delta-G solvation = -27634.860819 eV Core-core repulsion = 23880.524615 eV Total energy + Delta-G solvation = -3754.336203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38728 -39.93752 -38.05478 -35.87359 -34.89809 -32.55444 -32.07624 -31.34586 -30.15223 -27.74338 -27.39415 -26.62685 -24.92711 -23.55956 -22.70338 -22.11639 -20.91230 -20.54882 -19.47111 -18.21039 -17.67981 -16.51535 -16.26054 -16.16727 -15.58463 -15.21382 -14.87728 -14.64458 -14.49973 -14.32592 -13.85250 -13.50659 -13.41765 -13.29994 -13.26146 -12.66816 -12.54888 -12.41158 -12.05394 -11.91953 -11.53099 -11.51336 -11.43210 -11.25745 -11.22301 -11.11227 -10.67263 -10.63918 -10.44563 -10.27217 -10.15337 -10.13822 -10.10247 -10.04211 -9.76439 -9.49096 -9.04372 -8.63329 -6.98132 -5.97008 -3.37464 -0.57385 0.48680 1.15442 1.64912 2.76038 2.81840 3.31103 3.47964 3.50672 3.56115 4.18092 4.42399 4.51154 4.73179 4.81393 4.86755 4.87385 5.02562 5.19464 5.31979 5.41458 5.42165 5.51763 5.59542 5.62093 5.65805 5.78539 5.87074 5.90645 5.97649 5.99201 6.11149 6.14716 6.17707 6.26883 6.32359 6.41524 6.49271 6.62069 6.70440 6.89168 6.99859 7.21065 7.37032 7.88459 7.95670 8.32711 8.90679 9.69515 10.06737 11.18532 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.002979 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.938692 B = 9397.407837 C =10207.440334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C -0.141 4.141 4 C 0.108 3.892 5 N -0.244 5.244 6 N -0.255 5.255 7 S 0.409 5.591 8 C -0.286 4.286 9 C 0.600 3.400 10 O -0.512 6.512 11 N -0.712 5.712 12 C 0.151 3.849 13 H 0.089 0.911 14 C -0.142 4.142 15 C 0.127 3.873 16 N -0.603 5.603 17 C -0.261 4.261 18 H 0.091 0.909 19 C 0.026 3.974 20 N -0.910 5.910 21 Si 0.883 3.117 22 H -0.286 1.286 23 H -0.272 1.272 24 H -0.304 1.304 25 C 0.176 3.824 26 H 0.032 0.968 27 C -0.136 4.136 28 C -0.138 4.138 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.124 0.876 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.078 0.922 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 18.456 11.754 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.039 4.039 5 N -0.110 5.110 6 N -0.235 5.235 7 S 0.546 5.454 8 C -0.427 4.427 9 C 0.383 3.617 10 O -0.388 6.388 11 N -0.362 5.362 12 C 0.048 3.952 13 H 0.107 0.893 14 C -0.182 4.182 15 C 0.001 3.999 16 N -0.327 5.327 17 C -0.389 4.389 18 H 0.109 0.891 19 C -0.173 4.173 20 N -0.553 5.553 21 Si 0.714 3.286 22 H -0.214 1.214 23 H -0.197 1.197 24 H -0.232 1.232 25 C 0.069 3.931 26 H 0.050 0.950 27 C -0.193 4.193 28 C -0.177 4.177 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.142 0.858 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.247 18.519 12.848 22.772 hybrid contribution -0.639 0.463 -1.601 1.785 sum -3.887 18.982 11.247 22.404 Atomic orbital electron populations 1.21806 0.93107 1.02331 1.02706 1.20193 0.96707 0.96164 0.92110 1.21802 1.01152 0.94221 1.02711 1.22965 0.94254 0.92540 0.94182 1.70541 1.19842 1.24392 0.96191 1.78916 1.13413 1.06879 1.24293 1.82572 1.40072 1.28137 0.94623 1.27892 1.10540 1.04172 1.00081 1.16463 0.78834 0.80187 0.86221 1.90783 1.57773 1.66921 1.23338 1.46213 1.51225 1.27793 1.11008 1.21145 0.94161 0.93214 0.86681 0.89327 1.22421 0.97514 0.97694 1.00596 1.21377 0.88507 0.96254 0.93732 1.44488 1.06998 1.06596 1.74639 1.18900 1.26890 0.82385 1.10706 0.89125 1.25352 0.99093 0.95179 0.97696 1.69800 1.45161 1.07002 1.33339 0.86999 0.78969 0.79870 0.82809 1.21394 1.19675 1.23203 1.20284 0.89130 0.91997 0.91717 0.94993 1.21802 0.96053 0.99349 1.02139 1.22350 0.95245 0.99032 1.01103 0.91891 0.91309 0.92568 0.85847 0.92645 0.91330 0.91891 0.76986 0.92225 0.91432 0.95517 0.90360 0.92740 0.91468 0.94048 0.92324 0.91948 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.16 37.16 0.34 -0.95 16 2 C -0.03 -0.31 3.25 -91.77 -0.30 -0.61 16 3 C -0.14 -1.25 9.16 37.16 0.34 -0.90 16 4 C 0.11 1.24 5.53 -82.84 -0.46 0.78 16 5 N -0.24 -2.93 11.51 33.42 0.38 -2.54 16 6 N -0.25 -2.88 12.51 60.35 0.75 -2.12 16 7 S 0.41 3.57 23.05 -107.50 -2.48 1.09 16 8 C -0.29 -3.18 6.81 -35.95 -0.24 -3.43 16 9 C 0.60 7.71 7.77 -12.63 -0.10 7.61 16 10 O -0.51 -8.01 14.21 5.26 0.07 -7.93 16 11 N -0.71 -8.38 5.07 -54.93 -0.28 -8.66 16 12 C 0.15 2.19 2.42 -67.89 -0.16 2.03 16 13 H 0.09 1.41 7.57 -51.93 -0.39 1.02 16 14 C -0.14 -2.42 5.65 -26.61 -0.15 -2.57 16 15 C 0.13 2.67 4.20 -3.71 -0.02 2.66 16 16 N -0.60 -13.33 2.73 -165.03 -0.45 -13.78 16 17 C -0.26 -6.82 9.00 -15.06 -0.14 -6.96 16 18 H 0.09 2.50 6.44 -52.49 -0.34 2.16 16 19 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 20 N -0.91 -27.14 13.97 55.49 0.78 -26.37 16 21 Si 0.88 22.01 24.34 -169.99 -4.14 17.87 16 22 H -0.29 -6.90 6.42 56.52 0.36 -6.54 16 23 H -0.27 -6.70 6.90 56.52 0.39 -6.31 16 24 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 25 C 0.18 3.14 3.48 -67.82 -0.24 2.90 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 C -0.14 -2.29 7.95 37.16 0.30 -1.99 16 28 C -0.14 -1.94 4.81 -26.83 -0.13 -2.07 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.12 1.48 5.49 -51.93 -0.29 1.19 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.40 3.60 8.03 -40.82 -0.33 3.27 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.03 0.57 7.16 -51.93 -0.37 0.20 16 40 H 0.08 1.82 4.60 -51.93 -0.24 1.58 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 1.26 7.63 -51.93 -0.40 0.86 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.03 7.44 -51.93 -0.39 0.64 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -30.89 372.64 -7.78 -38.68 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.00 Total: 1.02 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.05 Total: -2.88 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 1.18 Total: -53.47 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.48 Total: 1.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.89 -7.78 -38.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947842732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.152 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds