Wall clock time and date at job start Tue Mar 31 2020 21:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47366 * 2 1 4 4 C 1.50709 * 109.46959 * 119.99829 * 2 1 3 5 5 N 1.31238 * 124.05164 * 300.02321 * 4 2 1 6 6 N 1.27338 * 120.03310 * 179.97438 * 5 4 2 7 7 S 1.56631 * 109.74366 * 359.69447 * 6 5 4 8 8 C 1.38246 * 124.05346 * 119.99986 * 4 2 1 9 9 C 1.47168 * 128.47785 * 0.02562 * 8 4 2 10 10 O 1.21620 * 120.00041 * 359.97438 * 9 8 4 11 11 N 1.34781 * 119.99861 * 180.02562 * 9 8 4 12 12 C 1.46499 * 119.99710 * 179.97438 * 11 9 8 13 13 H 1.08990 * 109.46230 * 34.97329 * 12 11 9 14 14 C 1.53039 * 109.45823 * 274.99746 * 12 11 9 15 15 C 1.53191 * 109.31106 * 178.61742 * 14 12 11 16 16 N 1.46925 * 108.77889 * 54.63654 * 15 14 12 17 17 C 1.36931 * 120.63447 * 126.36404 * 16 15 14 18 18 H 1.07999 * 120.00105 * 210.77882 * 17 16 15 19 19 C 1.38813 * 119.99704 * 30.78148 * 17 16 15 20 20 N 1.31625 * 119.99807 * 197.75940 * 19 17 16 21 21 Si 1.86798 * 120.00409 * 17.75283 * 19 17 16 22 22 H 1.48510 * 109.46985 * 273.13325 * 21 19 17 23 23 H 1.48507 * 109.46757 * 33.12720 * 21 19 17 24 24 H 1.48497 * 109.47439 * 153.12953 * 21 19 17 25 25 C 1.46929 * 118.73438 * 306.64433 * 16 15 14 26 26 H 1.08996 * 109.58829 * 293.56738 * 25 16 15 27 27 C 1.53002 * 109.58626 * 173.14206 * 25 16 15 28 28 C 1.52761 * 109.01101 * 53.30907 * 25 16 15 29 29 H 1.09003 * 109.47127 * 300.00329 * 1 2 3 30 30 H 1.09000 * 109.47033 * 60.00297 * 1 2 3 31 31 H 1.08999 * 109.46907 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47570 * 239.99843 * 2 1 3 33 33 H 1.08995 * 109.47263 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46801 * 299.99844 * 3 2 1 35 35 H 1.08999 * 109.46904 * 59.99435 * 3 2 1 36 36 H 0.97003 * 119.99518 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.49972 * 58.66762 * 14 12 11 38 38 H 1.09001 * 109.49693 * 298.56750 * 14 12 11 39 39 H 1.09001 * 109.58789 * 294.84717 * 15 14 12 40 40 H 1.09003 * 109.58349 * 174.42097 * 15 14 12 41 41 H 0.96998 * 119.99952 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.46910 * 59.99485 * 27 25 16 43 43 H 1.08996 * 109.47443 * 179.97438 * 27 25 16 44 44 H 1.09000 * 109.47078 * 299.99966 * 27 25 16 45 45 H 1.08998 * 109.56746 * 185.55244 * 28 25 16 46 46 H 1.09000 * 109.36030 * 65.49591 * 28 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7643 -0.3321 2.4583 6 7 2.2294 -0.9907 3.4440 7 16 3.0752 -2.2004 2.9202 8 6 2.8303 -1.8390 1.2014 9 6 3.3452 -2.5663 0.0302 10 8 3.0739 -2.1826 -1.0915 11 7 4.1166 -3.6583 0.2008 12 6 4.6287 -4.3827 -0.9650 13 1 4.8502 -3.6750 -1.7638 14 6 3.5751 -5.3825 -1.4473 15 6 4.1003 -6.1134 -2.6869 16 7 5.4011 -6.7158 -2.3651 17 6 5.6243 -8.0498 -2.5789 18 1 6.3073 -8.5920 -1.9418 19 6 4.9727 -8.7052 -3.6146 20 7 4.9000 -10.0195 -3.6192 21 14 4.1987 -7.7222 -5.0017 22 1 2.8169 -7.3330 -4.6215 23 1 5.0055 -6.5009 -5.2529 24 1 4.1585 -8.5509 -6.2333 25 6 6.4560 -5.8609 -1.8037 26 1 6.7703 -5.1310 -2.5496 27 6 7.6502 -6.7238 -1.3911 28 6 5.9063 -5.1317 -0.5791 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 4.3326 -3.9645 1.0955 37 1 2.6578 -4.8508 -1.6998 38 1 3.3715 -6.1056 -0.6575 39 1 4.2186 -5.4045 -3.5064 40 1 3.3972 -6.8947 -2.9756 41 1 4.4450 -10.4775 -4.3432 42 1 8.0366 -7.2504 -2.2638 43 1 8.4317 -6.0878 -0.9754 44 1 7.3331 -7.4480 -0.6408 45 1 6.6480 -4.4215 -0.2137 46 1 5.6807 -5.8572 0.2024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947842732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:56 Heat of formation + Delta-G solvation = 27.468258 kcal Electronic energy + Delta-G solvation = -27635.771755 eV Core-core repulsion = 23880.524615 eV Total energy + Delta-G solvation = -3755.247139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.23162 -41.03595 -39.44775 -36.71332 -36.15224 -34.29019 -33.41325 -32.60671 -31.51461 -28.73049 -28.08666 -27.96578 -26.52506 -24.73855 -24.14504 -23.02422 -22.07506 -21.67877 -20.92001 -19.03982 -18.74360 -18.27721 -17.45164 -17.11123 -16.94044 -16.34469 -16.21430 -15.94537 -15.58995 -15.35729 -15.20016 -14.90109 -14.79986 -14.34141 -14.11533 -14.08240 -13.89100 -13.49576 -13.43386 -13.07401 -12.85946 -12.73207 -12.64937 -12.28543 -12.25720 -12.20305 -12.06865 -11.93456 -11.86679 -11.74780 -11.52014 -11.50872 -11.30099 -10.98553 -10.95157 -10.82697 -10.69048 -10.17641 -8.85696 -8.11302 -5.45649 -1.40650 -0.30023 0.36707 0.79231 1.30709 1.42133 1.49324 1.77657 1.82867 2.44639 2.74464 3.09555 3.31024 3.36363 3.54925 3.79913 3.92262 3.95782 4.12224 4.14067 4.20435 4.24903 4.47032 4.56482 4.59663 4.67678 4.72813 4.76931 4.85021 4.89437 4.90538 4.94540 5.01491 5.06528 5.08139 5.11266 5.20024 5.27983 5.33615 5.41754 5.50245 5.60221 5.95953 6.23886 6.27113 6.54448 6.93298 6.97302 7.68146 8.09010 9.08194 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.002979 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.938692 B = 9397.407837 C =10207.440334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 C -0.136 4.136 4 C 0.105 3.895 5 N -0.263 5.263 6 N -0.281 5.281 7 S 0.500 5.500 8 C -0.310 4.310 9 C 0.604 3.396 10 O -0.542 6.542 11 N -0.700 5.700 12 C 0.161 3.839 13 H 0.080 0.920 14 C -0.132 4.132 15 C 0.123 3.877 16 N -0.616 5.616 17 C -0.232 4.232 18 H 0.071 0.929 19 C -0.033 4.033 20 N -0.959 5.959 21 Si 0.935 3.065 22 H -0.277 1.277 23 H -0.267 1.267 24 H -0.315 1.315 25 C 0.164 3.836 26 H 0.037 0.963 27 C -0.130 4.130 28 C -0.124 4.124 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.412 0.588 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.051 0.949 41 H 0.259 0.741 42 H 0.038 0.962 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.100 0.900 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.613 20.782 13.633 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.055 4.055 3 C -0.194 4.194 4 C -0.044 4.044 5 N -0.128 5.128 6 N -0.262 5.262 7 S 0.637 5.363 8 C -0.451 4.451 9 C 0.388 3.612 10 O -0.421 6.421 11 N -0.351 5.351 12 C 0.057 3.943 13 H 0.098 0.902 14 C -0.172 4.172 15 C -0.002 4.002 16 N -0.341 5.341 17 C -0.362 4.362 18 H 0.088 0.912 19 C -0.227 4.227 20 N -0.606 5.606 21 Si 0.765 3.235 22 H -0.204 1.204 23 H -0.192 1.192 24 H -0.244 1.244 25 C 0.059 3.941 26 H 0.054 0.946 27 C -0.187 4.187 28 C -0.164 4.164 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.249 0.751 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.118 0.882 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.804 20.905 14.784 25.757 hybrid contribution -0.690 -0.253 -2.053 2.181 sum -3.494 20.651 12.730 24.510 Atomic orbital electron populations 1.21782 0.92347 1.01943 1.03470 1.20210 0.97368 0.96746 0.91186 1.21772 1.00783 0.93390 1.03442 1.23150 0.94112 0.92678 0.94433 1.70604 1.20804 1.25141 0.96201 1.78678 1.14395 1.08221 1.24910 1.82196 1.37114 1.25336 0.91647 1.27746 1.11500 1.04574 1.01271 1.16577 0.78303 0.80046 0.86246 1.90778 1.58762 1.67736 1.24786 1.45900 1.50911 1.27265 1.11039 1.20832 0.93512 0.92489 0.87458 0.90227 1.22249 0.98297 0.97983 0.98680 1.21319 0.87653 0.95639 0.95634 1.44664 1.08775 1.05762 1.74917 1.18905 1.24255 0.84146 1.08887 0.91154 1.25884 1.01089 0.95732 1.00022 1.69916 1.47943 1.08512 1.34242 0.86137 0.78874 0.78431 0.80031 1.20415 1.19237 1.24437 1.20601 0.88502 0.91794 0.93222 0.94557 1.21737 0.96750 0.99491 1.00736 1.22184 0.95667 0.99434 0.99088 0.91812 0.89840 0.93499 0.87414 0.93146 0.89875 0.91858 0.75096 0.92048 0.91429 0.95675 0.93040 0.93241 0.94283 0.89908 0.93439 0.88197 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.16 71.98 0.66 -1.71 16 2 C -0.03 -0.66 3.25 -11.54 -0.04 -0.69 16 3 C -0.14 -2.23 9.16 71.98 0.66 -1.57 16 4 C 0.10 2.25 5.53 42.65 0.24 2.48 16 5 N -0.26 -5.89 11.51 -48.18 -0.55 -6.44 16 6 N -0.28 -5.72 12.51 37.02 0.46 -5.26 16 7 S 0.50 7.13 23.05 -56.49 -1.30 5.83 16 8 C -0.31 -6.20 6.81 24.62 0.17 -6.04 16 9 C 0.60 14.15 7.77 86.59 0.67 14.82 16 10 O -0.54 -16.23 14.21 -4.09 -0.06 -16.28 16 11 N -0.70 -14.18 5.07 -445.93 -2.26 -16.44 16 12 C 0.16 4.22 2.42 45.02 0.11 4.32 16 13 H 0.08 2.32 7.57 -2.39 -0.02 2.30 16 14 C -0.13 -4.27 5.65 30.67 0.17 -4.09 16 15 C 0.12 5.07 4.20 86.36 0.36 5.44 16 16 N -0.62 -26.75 2.73 -676.02 -1.85 -28.60 16 17 C -0.23 -12.30 9.00 84.03 0.76 -11.54 16 18 H 0.07 3.97 6.44 -2.91 -0.02 3.95 16 19 C -0.03 -1.87 5.26 84.86 0.45 -1.43 16 20 N -0.96 -59.14 13.97 21.65 0.30 -58.83 16 21 Si 0.93 46.48 24.34 68.60 1.67 48.15 16 22 H -0.28 -13.18 6.42 99.48 0.64 -12.54 16 23 H -0.27 -12.90 6.90 99.48 0.69 -12.21 16 24 H -0.32 -16.10 7.11 99.48 0.71 -15.40 16 25 C 0.16 5.48 3.48 44.83 0.16 5.64 16 26 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 27 C -0.13 -4.10 7.95 71.98 0.57 -3.53 16 28 C -0.12 -3.04 4.81 30.53 0.15 -2.89 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 2.51 5.49 -2.39 -0.01 2.50 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.41 5.74 8.03 -92.71 -0.74 5.00 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 39 H 0.03 1.05 7.16 -2.39 -0.02 1.03 16 40 H 0.05 2.39 4.60 -2.39 -0.01 2.38 16 41 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.04 1.43 7.63 -2.39 -0.02 1.41 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.59 7.44 -2.39 -0.02 1.57 16 45 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 46 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -68.98 372.64 1.66 -67.32 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.17 Total: 11.34 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.08 Total: -0.79 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -3.90 Total: -115.57 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.06 Total: -16.28 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.67 Total: 48.15 kcal Atomic # 16 Polarization: 7.13 SS G_CDS: -1.30 Total: 5.83 kcal Total: -68.98 1.66 -67.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947842732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.793 kcal (2) G-P(sol) polarization free energy of solvation -68.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds