Wall clock time and date at job start Tue Mar 31 2020 21:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47314 * 2 1 4 4 C 1.50708 * 109.47006 * 119.99500 * 2 1 3 5 5 N 1.31237 * 124.05425 * 299.97878 * 4 2 1 6 6 N 1.27337 * 120.03729 * 180.02562 * 5 4 2 7 7 S 1.56629 * 109.74001 * 359.97438 * 6 5 4 8 8 C 1.38244 * 124.05528 * 119.99854 * 4 2 1 9 9 C 1.47167 * 128.47305 * 0.02562 * 8 4 2 10 10 O 1.21622 * 120.00356 * 359.97438 * 9 8 4 11 11 N 1.34784 * 119.99886 * 179.97438 * 9 8 4 12 12 C 1.46499 * 120.00110 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.45927 * 325.02390 * 12 11 9 14 14 C 1.53040 * 109.46057 * 84.99795 * 12 11 9 15 15 C 1.53190 * 109.31346 * 58.65554 * 14 12 11 16 16 N 1.46923 * 108.77724 * 54.63188 * 15 14 12 17 17 C 1.36942 * 120.62996 * 126.41221 * 16 15 14 18 18 H 1.07999 * 120.00042 * 209.02149 * 17 16 15 19 19 C 1.38807 * 120.00112 * 29.02170 * 17 16 15 20 20 N 1.31621 * 119.99707 * 15.01074 * 19 17 16 21 21 Si 1.86802 * 120.00284 * 195.01244 * 19 17 16 22 22 H 1.48502 * 109.46834 * 59.99523 * 21 19 17 23 23 H 1.48500 * 109.47146 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47085 * 300.00013 * 21 19 17 25 25 C 1.46924 * 118.74191 * 306.39463 * 16 15 14 26 26 H 1.09001 * 109.58848 * 293.81915 * 25 16 15 27 27 C 1.52996 * 109.58881 * 173.39299 * 25 16 15 28 28 C 1.53038 * 109.45740 * 205.06784 * 12 11 9 29 29 H 1.08999 * 109.47317 * 300.00739 * 1 2 3 30 30 H 1.09007 * 109.46789 * 60.00429 * 1 2 3 31 31 H 1.08993 * 109.47119 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47779 * 239.99525 * 2 1 3 33 33 H 1.09003 * 109.47065 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.46842 * 299.99538 * 3 2 1 35 35 H 1.08999 * 109.47532 * 59.99392 * 3 2 1 36 36 H 0.96999 * 119.99413 * 359.97438 * 11 9 8 37 37 H 1.08998 * 109.49890 * 178.60423 * 14 12 11 38 38 H 1.09000 * 109.49871 * 298.67209 * 14 12 11 39 39 H 1.08998 * 109.59140 * 174.42194 * 15 14 12 40 40 H 1.09003 * 109.58812 * 294.70262 * 15 14 12 41 41 H 0.97004 * 119.99506 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.47408 * 60.00152 * 27 25 16 43 43 H 1.09000 * 109.47258 * 180.02562 * 27 25 16 44 44 H 1.08997 * 109.47163 * 299.99911 * 27 25 16 45 45 H 1.08997 * 109.49765 * 61.29495 * 28 12 11 46 46 H 1.09002 * 109.49803 * 181.39408 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7650 -0.3316 2.4584 6 7 2.2308 -0.9895 3.4441 7 16 3.0825 -2.1951 2.9203 8 6 2.8302 -1.8389 1.2015 9 6 3.3451 -2.5663 0.0304 10 8 3.0738 -2.1826 -1.0914 11 7 4.1174 -3.6577 0.2009 12 6 4.6304 -4.3815 -0.9649 13 1 3.8898 -4.3540 -1.7642 14 6 5.9245 -3.7213 -1.4460 15 6 6.9513 -3.7311 -0.3092 16 7 7.1183 -5.1115 0.1654 17 6 8.3621 -5.6806 0.2321 18 1 8.4741 -6.7486 0.1168 19 6 9.4788 -4.8850 0.4481 20 7 9.3333 -3.6498 0.8788 21 14 11.1879 -5.5671 0.1273 22 1 11.3020 -5.9663 -1.2985 23 1 12.2018 -4.5257 0.4320 24 1 11.4186 -6.7516 0.9928 25 6 5.9257 -5.8696 0.5673 26 1 5.4875 -5.4169 1.4568 27 6 6.3153 -7.3189 0.8649 28 6 4.9103 -5.8358 -0.5794 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 4.3340 -3.9634 1.0956 37 1 6.3200 -4.2741 -2.2981 38 1 5.7196 -2.6927 -1.7430 39 1 7.9056 -3.3526 -0.6754 40 1 6.5980 -3.1019 0.5078 41 1 10.1137 -3.0936 1.0294 42 1 7.0471 -7.3399 1.6725 43 1 5.4292 -7.8796 1.1624 44 1 6.7471 -7.7698 -0.0285 45 1 3.9837 -6.3121 -0.2590 46 1 5.3153 -6.3688 -1.4397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947842733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:00 Heat of formation + Delta-G solvation = 45.507089 kcal Electronic energy + Delta-G solvation = -28150.263942 eV Core-core repulsion = 24395.799025 eV Total energy + Delta-G solvation = -3754.464917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15856 -39.81997 -37.78089 -35.66971 -34.44675 -32.49654 -31.84261 -30.86058 -29.69020 -27.46649 -27.25670 -26.46252 -25.08599 -23.62200 -22.20835 -21.86200 -20.75833 -20.51969 -18.88749 -17.92755 -17.52863 -16.44102 -16.05886 -15.69417 -15.34499 -15.05467 -14.74068 -14.39269 -14.24196 -14.05115 -13.81199 -13.26502 -13.24761 -13.05794 -12.94207 -12.56663 -12.40585 -12.28027 -11.94536 -11.54142 -11.38374 -11.31410 -11.29216 -11.06885 -11.02485 -10.75627 -10.69558 -10.49471 -10.39897 -10.23887 -10.17180 -9.90077 -9.82833 -9.81819 -9.78446 -9.39335 -8.83352 -8.51865 -6.71634 -5.83814 -3.28407 -0.32897 0.74370 1.40319 1.87053 2.98865 3.12261 3.34093 3.40828 3.41320 3.78203 4.39382 4.43345 4.67486 4.92023 5.01630 5.04007 5.22112 5.27934 5.28576 5.50498 5.54257 5.56322 5.57919 5.72875 5.77523 5.87240 5.92050 5.99823 6.08727 6.12005 6.21639 6.23464 6.29283 6.36267 6.45576 6.50604 6.63490 6.81017 6.90555 6.96934 7.28676 7.47044 7.60595 7.61006 7.76140 8.13329 8.39625 9.15417 9.78689 10.34450 11.24298 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016179 B = 0.003257 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.206780 B = 8595.543086 C = 8698.231932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.028 4.028 3 C -0.142 4.142 4 C 0.104 3.896 5 N -0.247 5.247 6 N -0.259 5.259 7 S 0.421 5.579 8 C -0.285 4.285 9 C 0.602 3.398 10 O -0.521 6.521 11 N -0.701 5.701 12 C 0.155 3.845 13 H 0.078 0.922 14 C -0.155 4.155 15 C 0.174 3.826 16 N -0.586 5.586 17 C -0.253 4.253 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.167 3.833 26 H 0.018 0.982 27 C -0.137 4.137 28 C -0.140 4.140 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.123 0.877 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.400 0.600 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.016 0.984 41 H 0.254 0.746 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.094 2.333 -0.308 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.050 4.050 3 C -0.200 4.200 4 C -0.043 4.043 5 N -0.113 5.113 6 N -0.240 5.240 7 S 0.558 5.442 8 C -0.426 4.426 9 C 0.385 3.615 10 O -0.399 6.399 11 N -0.352 5.352 12 C 0.051 3.949 13 H 0.097 0.903 14 C -0.195 4.195 15 C 0.048 3.952 16 N -0.310 5.310 17 C -0.382 4.382 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.060 3.940 26 H 0.036 0.964 27 C -0.195 4.195 28 C -0.180 4.180 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.236 0.764 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.101 2.673 0.947 15.365 hybrid contribution 1.020 -0.158 -0.914 1.379 sum -14.081 2.515 0.033 14.304 Atomic orbital electron populations 1.21794 0.93346 1.02101 1.02563 1.20154 0.96443 0.96165 0.92233 1.21806 1.01403 0.94225 1.02525 1.22910 0.94728 0.92516 0.94179 1.70526 1.20211 1.24355 0.96167 1.78860 1.13465 1.07328 1.24340 1.82766 1.38941 1.27901 0.94596 1.27882 1.10064 1.04394 1.00235 1.16414 0.78641 0.80339 0.86141 1.90734 1.59333 1.66493 1.23351 1.46086 1.49955 1.27833 1.11364 1.21020 0.95927 0.91388 0.86530 0.90348 1.22586 0.96034 0.99624 1.01270 1.20729 0.97233 0.85551 0.91664 1.44127 1.01444 1.11299 1.74083 1.19124 0.82895 0.92922 1.43303 0.91232 1.25071 0.98248 0.96795 0.99298 1.69996 1.28926 1.08222 1.47561 0.86399 0.84282 0.77959 0.78268 1.21045 1.21701 1.20921 1.20396 0.88455 0.92606 0.92563 0.96428 1.21801 0.99971 0.95525 1.02165 1.22397 0.99604 0.94171 1.01833 0.91937 0.91495 0.92722 0.85899 0.92475 0.91477 0.91939 0.76364 0.91416 0.92613 0.89345 0.96599 0.93610 0.91828 0.94252 0.92607 0.92416 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.16 37.16 0.34 -1.05 16 2 C -0.03 -0.33 3.25 -91.77 -0.30 -0.63 16 3 C -0.14 -1.51 9.16 37.16 0.34 -1.16 16 4 C 0.10 1.41 5.53 -82.84 -0.46 0.96 16 5 N -0.25 -3.50 11.51 33.42 0.38 -3.11 16 6 N -0.26 -3.60 12.51 60.35 0.75 -2.85 16 7 S 0.42 5.11 23.05 -107.50 -2.48 2.63 16 8 C -0.28 -3.94 6.80 -35.96 -0.24 -4.18 16 9 C 0.60 9.15 7.77 -12.63 -0.10 9.06 16 10 O -0.52 -8.87 14.20 5.26 0.07 -8.79 16 11 N -0.70 -10.44 4.26 -54.92 -0.23 -10.67 16 12 C 0.15 2.43 2.78 -67.89 -0.19 2.24 16 13 H 0.08 1.20 7.57 -51.93 -0.39 0.81 16 14 C -0.16 -2.84 5.77 -26.61 -0.15 -3.00 16 15 C 0.17 3.86 5.03 -3.71 -0.02 3.84 16 16 N -0.59 -13.15 2.99 -164.78 -0.49 -13.64 16 17 C -0.25 -6.36 8.60 -15.06 -0.13 -6.48 16 18 H 0.07 1.70 6.21 -52.49 -0.33 1.38 16 19 C 0.00 0.12 4.96 -17.43 -0.09 0.03 16 20 N -0.90 -24.96 11.14 55.49 0.62 -24.34 16 21 Si 0.90 20.85 29.58 -169.99 -5.03 15.82 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.17 3.01 3.20 -67.60 -0.22 2.79 16 26 H 0.02 0.32 6.64 -51.93 -0.34 -0.02 16 27 C -0.14 -2.30 7.94 37.16 0.30 -2.00 16 28 C -0.14 -2.12 5.07 -26.61 -0.13 -2.25 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.12 1.63 5.49 -51.93 -0.29 1.34 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.40 5.68 6.30 -40.82 -0.26 5.42 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 40 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 41 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.06 1.17 7.62 -51.93 -0.40 0.78 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.95 7.45 -51.93 -0.39 0.57 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 374.54 15.07 5.64 5.64 Total: -1.00 -28.64 374.54 -8.70 -37.34 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.89 Total: 3.81 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.05 Total: -1.84 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 1.03 Total: -54.61 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -2.48 Total: 2.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.64 -8.70 -37.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947842733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.845 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds