Wall clock time and date at job start Tue Mar 31 2020 21:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46985 * 2 1 4 4 C 1.50698 * 109.47351 * 119.99647 * 2 1 3 5 5 N 1.31245 * 124.05406 * 299.98147 * 4 2 1 6 6 N 1.27337 * 120.03501 * 180.02562 * 5 4 2 7 7 S 1.56644 * 109.74012 * 359.73362 * 6 5 4 8 8 C 1.38245 * 124.05521 * 119.99964 * 4 2 1 9 9 C 1.47168 * 128.47523 * 359.94521 * 8 4 2 10 10 O 1.21621 * 120.00051 * 0.02562 * 9 8 4 11 11 N 1.34780 * 119.99781 * 180.27322 * 9 8 4 12 12 C 1.46501 * 119.99585 * 179.72545 * 11 9 8 13 13 H 1.08997 * 109.46296 * 324.97648 * 12 11 9 14 14 C 1.53047 * 109.45888 * 84.93253 * 12 11 9 15 15 C 1.53196 * 109.31038 * 181.38083 * 14 12 11 16 16 N 1.46927 * 108.77736 * 305.36517 * 15 14 12 17 17 C 1.36937 * 120.62970 * 233.63005 * 16 15 14 18 18 H 1.08000 * 119.99948 * 150.14678 * 17 16 15 19 19 C 1.38809 * 120.00033 * 330.14778 * 17 16 15 20 20 N 1.31613 * 119.99869 * 344.49617 * 19 17 16 21 21 Si 1.86804 * 119.99836 * 164.50483 * 19 17 16 22 22 H 1.48496 * 109.47242 * 89.99810 * 21 19 17 23 23 H 1.48501 * 109.46731 * 209.99922 * 21 19 17 24 24 H 1.48499 * 109.47022 * 329.99159 * 21 19 17 25 25 C 1.46922 * 118.73779 * 53.61131 * 16 15 14 26 26 H 1.09000 * 109.58734 * 66.17477 * 25 16 15 27 27 C 1.52998 * 109.58984 * 186.60325 * 25 16 15 28 28 C 1.53040 * 109.45862 * 204.99766 * 12 11 9 29 29 H 1.08997 * 109.47165 * 300.00210 * 1 2 3 30 30 H 1.09000 * 109.46932 * 60.00079 * 1 2 3 31 31 H 1.08997 * 109.46784 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47165 * 239.99790 * 2 1 3 33 33 H 1.08994 * 109.47352 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46846 * 300.00410 * 3 2 1 35 35 H 1.09002 * 109.46911 * 59.99331 * 3 2 1 36 36 H 0.96990 * 120.00197 * 359.72400 * 11 9 8 37 37 H 1.08997 * 109.49733 * 301.33398 * 14 12 11 38 38 H 1.09001 * 109.49530 * 61.43312 * 14 12 11 39 39 H 1.09003 * 109.58081 * 185.58043 * 15 14 12 40 40 H 1.09001 * 109.70082 * 65.22565 * 15 14 12 41 41 H 0.97003 * 119.99867 * 180.02562 * 20 19 17 42 42 H 1.08991 * 109.47611 * 179.29006 * 27 25 16 43 43 H 1.09004 * 109.46964 * 299.28991 * 27 25 16 44 44 H 1.09006 * 109.47107 * 59.28558 * 27 25 16 45 45 H 1.08991 * 109.49996 * 298.57114 * 28 12 11 46 46 H 1.08999 * 109.49453 * 58.63405 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7651 -0.3316 2.4583 6 7 2.2310 -0.9895 3.4440 7 16 3.0778 -2.1988 2.9200 8 6 2.8304 -1.8388 1.2013 9 6 3.3440 -2.5671 0.0302 10 8 3.0721 -2.1838 -1.0916 11 7 4.1115 -3.6618 0.2007 12 6 4.6177 -4.3903 -0.9652 13 1 3.8747 -4.3616 -1.7621 14 6 5.9128 -3.7361 -1.4523 15 6 6.4206 -4.4792 -2.6919 16 7 6.5504 -5.9064 -2.3677 17 6 7.7306 -6.5664 -2.5836 18 1 8.0057 -7.4005 -1.9550 19 6 8.5734 -6.1635 -3.6103 20 7 8.1233 -5.3677 -4.5571 21 14 10.3462 -6.7510 -3.6483 22 1 10.4305 -8.0215 -4.4123 23 1 11.1944 -5.7226 -4.3027 24 1 10.8231 -6.9755 -2.2600 25 6 5.3899 -6.6118 -1.8070 26 1 4.5962 -6.6597 -2.5526 27 6 5.7991 -8.0280 -1.3975 28 6 4.8936 -5.8448 -0.5773 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 4.3287 -3.9673 1.0953 37 1 5.7206 -2.6937 -1.7063 38 1 6.6645 -3.7866 -0.6645 39 1 7.3924 -4.0811 -2.9840 40 1 5.7129 -4.3535 -3.5113 41 1 8.7122 -5.0865 -5.2748 42 1 4.9401 -8.5452 -0.9703 43 1 6.1519 -8.5720 -2.2737 44 1 6.5971 -7.9757 -0.6567 45 1 5.6548 -5.8754 0.2022 46 1 3.9761 -6.3030 -0.2080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947842734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:03 Heat of formation + Delta-G solvation = 43.070266 kcal Electronic energy + Delta-G solvation = -27528.784575 eV Core-core repulsion = 23774.213990 eV Total energy + Delta-G solvation = -3754.570586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.31754 -39.78407 -37.76043 -35.79541 -34.74271 -32.55222 -31.87732 -31.02125 -29.59517 -27.63483 -27.33291 -26.42813 -24.98336 -23.58482 -22.25678 -21.86026 -20.87285 -20.31965 -19.32739 -18.13417 -17.58328 -16.37087 -16.18437 -15.99368 -15.41330 -15.12355 -14.72947 -14.46956 -14.33046 -13.97798 -13.72852 -13.37280 -13.34455 -13.21425 -12.89309 -12.79392 -12.57475 -12.35254 -11.66267 -11.47180 -11.46647 -11.29776 -11.23984 -11.10010 -11.00921 -10.92205 -10.69454 -10.56806 -10.39716 -10.23944 -10.11613 -10.07870 -9.98688 -9.96792 -9.81497 -9.47104 -8.90848 -8.47796 -6.68218 -5.81292 -3.25606 -0.50597 0.55151 1.21583 1.71607 2.87481 2.93734 3.34941 3.42619 3.43621 3.62690 4.25306 4.45767 4.52624 4.80238 4.93170 4.93865 5.17428 5.29070 5.37586 5.47472 5.47872 5.48498 5.65456 5.67354 5.68533 5.85806 5.89154 6.03708 6.06187 6.08203 6.20619 6.25607 6.29445 6.34950 6.41968 6.54542 6.70238 6.73574 6.96914 7.04327 7.28241 7.34840 7.44927 7.63306 7.79263 8.00984 8.43151 9.18390 9.81784 10.38738 11.27570 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.002723 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.723930 B =10282.077084 C =10811.244359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 C -0.141 4.141 4 C 0.106 3.894 5 N -0.244 5.244 6 N -0.256 5.256 7 S 0.405 5.595 8 C -0.283 4.283 9 C 0.598 3.402 10 O -0.510 6.510 11 N -0.712 5.712 12 C 0.151 3.849 13 H 0.087 0.913 14 C -0.148 4.148 15 C 0.175 3.825 16 N -0.587 5.587 17 C -0.253 4.253 18 H 0.070 0.930 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.172 3.828 26 H 0.028 0.972 27 C -0.135 4.135 28 C -0.136 4.136 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.125 0.875 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.394 0.606 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.022 0.978 41 H 0.254 0.746 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 6.783 13.158 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 C -0.199 4.199 4 C -0.041 4.041 5 N -0.110 5.110 6 N -0.236 5.236 7 S 0.542 5.458 8 C -0.423 4.423 9 C 0.381 3.619 10 O -0.387 6.387 11 N -0.362 5.362 12 C 0.049 3.951 13 H 0.105 0.895 14 C -0.188 4.188 15 C 0.049 3.951 16 N -0.311 5.311 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.729 3.271 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.064 3.936 26 H 0.046 0.954 27 C -0.193 4.193 28 C -0.176 4.176 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.228 0.772 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.244 7.070 14.187 20.029 hybrid contribution 0.949 -0.147 -0.864 1.292 sum -11.295 6.922 13.322 18.788 Atomic orbital electron populations 1.21800 0.93185 1.02211 1.02667 1.20193 0.96612 0.96218 0.92154 1.21804 1.01284 0.94185 1.02652 1.22962 0.94426 0.92527 0.94156 1.70535 1.19885 1.24329 0.96218 1.78916 1.13464 1.06972 1.24292 1.82555 1.40157 1.28307 0.94801 1.27941 1.10192 1.04171 1.00041 1.16465 0.78782 0.80491 0.86177 1.90788 1.58308 1.66304 1.23269 1.46280 1.51121 1.27761 1.11061 1.21196 0.96635 0.91021 0.86297 0.89466 1.22605 0.95398 0.99284 1.01537 1.20734 1.00949 0.82955 0.90450 1.44165 1.08236 1.04848 1.73819 1.19135 0.94865 1.14428 1.09867 0.91270 1.25107 0.99234 1.00056 0.95061 1.70014 1.34484 1.38149 1.11867 0.86350 0.85147 0.77960 0.77608 1.21408 1.21616 1.20514 1.20349 0.90594 0.91050 0.91573 0.95447 1.21790 0.99672 0.96200 1.01642 1.22419 1.00353 0.93723 1.01070 0.91946 0.91324 0.92652 0.85775 0.92557 0.91319 0.91946 0.77242 0.92697 0.92490 0.89295 0.95988 0.93610 0.94279 0.91813 0.92721 0.91613 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.16 37.16 0.34 -0.98 16 2 C -0.03 -0.33 3.25 -91.77 -0.30 -0.63 16 3 C -0.14 -1.36 9.16 37.16 0.34 -1.02 16 4 C 0.11 1.28 5.53 -82.84 -0.46 0.83 16 5 N -0.24 -3.04 11.51 33.42 0.38 -2.66 16 6 N -0.26 -3.01 12.51 60.35 0.75 -2.26 16 7 S 0.41 3.76 23.05 -107.50 -2.48 1.28 16 8 C -0.28 -3.34 6.80 -35.95 -0.24 -3.59 16 9 C 0.60 8.24 7.77 -12.63 -0.10 8.14 16 10 O -0.51 -8.53 14.21 5.26 0.07 -8.45 16 11 N -0.71 -9.11 5.07 -54.92 -0.28 -9.39 16 12 C 0.15 2.39 2.42 -67.88 -0.16 2.23 16 13 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 14 C -0.15 -2.73 5.65 -26.61 -0.15 -2.88 16 15 C 0.18 4.02 5.28 -3.71 -0.02 4.00 16 16 N -0.59 -13.71 2.99 -164.77 -0.49 -14.20 16 17 C -0.25 -6.51 8.58 -15.06 -0.13 -6.63 16 18 H 0.07 1.73 6.23 -52.49 -0.33 1.40 16 19 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 20 N -0.90 -25.43 11.23 55.49 0.62 -24.81 16 21 Si 0.90 21.01 29.58 -169.99 -5.03 15.98 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.17 3.28 3.50 -67.60 -0.24 3.05 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 C -0.14 -2.35 7.95 37.16 0.30 -2.05 16 28 C -0.14 -2.07 4.84 -26.61 -0.13 -2.20 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.12 1.57 5.49 -51.93 -0.29 1.29 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.39 3.95 8.03 -40.82 -0.33 3.62 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.21 7.67 -51.93 -0.40 0.82 16 44 H 0.05 0.95 7.40 -51.93 -0.38 0.57 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -29.70 378.98 -8.83 -38.53 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.07 Total: 1.97 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.04 Total: -1.70 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.99 Total: -53.32 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.48 Total: 1.28 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.70 -8.83 -38.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947842734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.604 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds